Experiment: R2A_PIPES with Cobalt chloride 1024 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt purK and sodA are separated by 50 nucleotides sodA and grxD are separated by 115 nucleotides grxD and yqjQ overlap by 4 nucleotides yqjQ and marC are separated by 54 nucleotides
OKGIIK_03050: purK - 5-(carboxyamino)imidazole ribonucleotide synthase, at 692,733 to 693,923
purK
OKGIIK_03055: sodA - superoxide dismutase [Fe], at 693,974 to 694,552
sodA
OKGIIK_03060: grxD - Grx4 family monothiol glutaredoxin, at 694,668 to 694,991
grxD
OKGIIK_03065: yqjQ - Short-chain dehydrogenase, at 694,988 to 695,758
yqjQ
OKGIIK_03070: marC - YhgN family NAAT transporter, at 695,813 to 696,424
marC
Position (kb) 694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 693.898 kb on - strand at 693.898 kb on - strand at 693.898 kb on - strand at 693.898 kb on - strand at 693.898 kb on - strand at 693.898 kb on - strand at 693.898 kb on - strand at 693.898 kb on - strand at 693.898 kb on - strand at 693.898 kb on - strand at 693.953 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.624 kb on + strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.625 kb on - strand at 694.629 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.648 kb on + strand at 694.649 kb on - strand at 694.649 kb on - strand at 694.649 kb on - strand at 694.673 kb on + strand at 695.078 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.174 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.252 kb on + strand, within yqjQ at 695.253 kb on - strand, within yqjQ at 695.511 kb on - strand, within yqjQ at 695.636 kb on + strand, within yqjQ at 695.636 kb on + strand, within yqjQ at 695.636 kb on + strand, within yqjQ at 695.696 kb on + strand at 695.696 kb on + strand at 695.696 kb on + strand at 695.696 kb on + strand at 695.696 kb on + strand at 695.697 kb on - strand at 695.697 kb on - strand at 695.697 kb on - strand at 695.697 kb on - strand at 695.697 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM remove 693,898 - -1.6 693,898 - +0.7 693,898 - -1.8 693,898 - +0.2 693,898 - +0.2 693,898 - -1.1 693,898 - -0.2 693,898 - -0.4 693,898 - -0.2 693,898 - +1.1 693,953 + +1.0 694,624 + -2.2 694,624 + +0.8 694,624 + -1.0 694,624 + -0.4 694,624 + +0.2 694,624 + -0.6 694,624 + -2.7 694,624 + +0.8 694,625 - -2.2 694,625 - +0.1 694,625 - -0.2 694,625 - -0.7 694,625 - -0.0 694,625 - +0.7 694,625 - -0.7 694,625 - +0.2 694,625 - -1.3 694,625 - -1.1 694,625 - +1.6 694,625 - -0.8 694,625 - +0.2 694,625 - -0.8 694,625 - +1.0 694,625 - -1.0 694,625 - -1.3 694,625 - +0.5 694,625 - +0.5 694,625 - -0.7 694,625 - +0.1 694,625 - -0.4 694,625 - +0.2 694,625 - +0.8 694,625 - -1.0 694,625 - -0.3 694,629 + +0.7 694,648 + -0.4 694,648 + -0.9 694,648 + +0.0 694,648 + +1.2 694,649 - -0.5 694,649 - +0.5 694,649 - -0.2 694,673 + -0.3 695,078 + yqjQ OKGIIK_03065 0.12 -0.2 695,174 + yqjQ OKGIIK_03065 0.24 -1.2 695,174 + yqjQ OKGIIK_03065 0.24 -1.5 695,174 + yqjQ OKGIIK_03065 0.24 -1.2 695,252 + yqjQ OKGIIK_03065 0.34 -0.8 695,252 + yqjQ OKGIIK_03065 0.34 -0.5 695,252 + yqjQ OKGIIK_03065 0.34 +0.5 695,252 + yqjQ OKGIIK_03065 0.34 -3.2 695,252 + yqjQ OKGIIK_03065 0.34 -1.1 695,252 + yqjQ OKGIIK_03065 0.34 -1.6 695,253 - yqjQ OKGIIK_03065 0.34 -1.8 695,511 - yqjQ OKGIIK_03065 0.68 -0.2 695,636 + yqjQ OKGIIK_03065 0.84 -1.0 695,636 + yqjQ OKGIIK_03065 0.84 -1.0 695,636 + yqjQ OKGIIK_03065 0.84 +1.2 695,696 + -1.3 695,696 + -0.2 695,696 + -0.2 695,696 + -1.3 695,696 + -0.2 695,697 - -1.0 695,697 - -1.2 695,697 - -0.8 695,697 - -0.7 695,697 - -1.2
Or see this region's nucleotide sequence