Experiment: R2A_PIPES with Cobalt chloride 1024 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hrpA and OKGIIK_02160 are separated by 9 nucleotides OKGIIK_02160 and OKGIIK_02165 are separated by 99 nucleotides OKGIIK_02165 and relA are separated by 107 nucleotides
OKGIIK_02155: hrpA - ATP-dependent RNA helicase HrpA, at 502,888 to 507,129
hrpA
OKGIIK_02160: OKGIIK_02160 - hypothetical protein, at 507,139 to 507,618
_02160
OKGIIK_02165: OKGIIK_02165 - hypothetical protein, at 507,718 to 508,266
_02165
OKGIIK_02170: relA - GTP diphosphokinase, at 508,374 to 510,515
relA
Position (kb) 507
508 Strain fitness (log2 ratio) -2
-1
0
1
2 at 506.536 kb on + strand, within hrpA at 506.536 kb on + strand, within hrpA at 506.536 kb on + strand, within hrpA at 506.536 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.624 kb on + strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.625 kb on - strand, within hrpA at 506.785 kb on + strand at 506.785 kb on + strand at 506.785 kb on + strand at 506.786 kb on - strand at 506.786 kb on - strand at 506.867 kb on - strand at 506.875 kb on + strand at 506.876 kb on - strand at 506.951 kb on + strand at 506.951 kb on + strand at 506.951 kb on + strand at 506.952 kb on - strand at 506.952 kb on - strand at 506.952 kb on - strand at 506.959 kb on + strand at 506.959 kb on + strand at 506.959 kb on + strand at 506.960 kb on - strand at 506.972 kb on - strand at 506.972 kb on - strand at 507.048 kb on - strand at 507.170 kb on + strand at 507.171 kb on - strand at 507.171 kb on - strand at 507.171 kb on - strand at 507.171 kb on - strand at 507.171 kb on - strand at 507.171 kb on - strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.185 kb on + strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.186 kb on - strand at 507.271 kb on + strand, within OKGIIK_02160 at 507.379 kb on - strand, within OKGIIK_02160 at 507.379 kb on - strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.380 kb on + strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.381 kb on - strand, within OKGIIK_02160 at 507.752 kb on + strand at 507.752 kb on + strand at 507.752 kb on + strand at 507.752 kb on + strand at 507.752 kb on + strand at 507.752 kb on + strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 507.753 kb on - strand at 508.048 kb on + strand, within OKGIIK_02165 at 508.255 kb on + strand at 508.255 kb on + strand at 508.255 kb on + strand at 508.255 kb on + strand at 508.255 kb on + strand at 508.255 kb on + strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.256 kb on - strand at 508.277 kb on + strand at 508.278 kb on - strand at 508.278 kb on - strand at 508.278 kb on - strand at 508.316 kb on + strand at 508.316 kb on + strand at 508.316 kb on + strand at 508.317 kb on - strand at 508.317 kb on - strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.381 kb on + strand at 508.382 kb on - strand at 508.382 kb on - strand at 508.382 kb on - strand at 508.382 kb on - strand at 508.382 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM remove 506,536 + hrpA OKGIIK_02155 0.86 -0.6 506,536 + hrpA OKGIIK_02155 0.86 +0.3 506,536 + hrpA OKGIIK_02155 0.86 -0.9 506,536 + hrpA OKGIIK_02155 0.86 -1.3 506,624 + hrpA OKGIIK_02155 0.88 -0.1 506,624 + hrpA OKGIIK_02155 0.88 -2.4 506,624 + hrpA OKGIIK_02155 0.88 -2.4 506,624 + hrpA OKGIIK_02155 0.88 -1.6 506,624 + hrpA OKGIIK_02155 0.88 -0.1 506,624 + hrpA OKGIIK_02155 0.88 -1.9 506,624 + hrpA OKGIIK_02155 0.88 -0.6 506,624 + hrpA OKGIIK_02155 0.88 -1.4 506,624 + hrpA OKGIIK_02155 0.88 +1.3 506,624 + hrpA OKGIIK_02155 0.88 +0.9 506,624 + hrpA OKGIIK_02155 0.88 -0.9 506,624 + hrpA OKGIIK_02155 0.88 -2.1 506,624 + hrpA OKGIIK_02155 0.88 -1.2 506,624 + hrpA OKGIIK_02155 0.88 -1.1 506,624 + hrpA OKGIIK_02155 0.88 +0.9 506,625 - hrpA OKGIIK_02155 0.88 -2.6 506,625 - hrpA OKGIIK_02155 0.88 -2.4 506,625 - hrpA OKGIIK_02155 0.88 -0.4 506,625 - hrpA OKGIIK_02155 0.88 -0.1 506,625 - hrpA OKGIIK_02155 0.88 -0.9 506,625 - hrpA OKGIIK_02155 0.88 -1.1 506,625 - hrpA OKGIIK_02155 0.88 -1.4 506,625 - hrpA OKGIIK_02155 0.88 -1.4 506,625 - hrpA OKGIIK_02155 0.88 +1.1 506,625 - hrpA OKGIIK_02155 0.88 -2.2 506,625 - hrpA OKGIIK_02155 0.88 -0.5 506,625 - hrpA OKGIIK_02155 0.88 +0.1 506,625 - hrpA OKGIIK_02155 0.88 -1.6 506,625 - hrpA OKGIIK_02155 0.88 -0.6 506,625 - hrpA OKGIIK_02155 0.88 -2.1 506,625 - hrpA OKGIIK_02155 0.88 -1.3 506,625 - hrpA OKGIIK_02155 0.88 -0.9 506,625 - hrpA OKGIIK_02155 0.88 -0.5 506,785 + +0.1 506,785 + -0.7 506,785 + -1.6 506,786 - -0.1 506,786 - +0.7 506,867 - -2.3 506,875 + -2.6 506,876 - -1.4 506,951 + -0.7 506,951 + -1.5 506,951 + -0.8 506,952 - -0.3 506,952 - -1.7 506,952 - -1.0 506,959 + +1.5 506,959 + -0.9 506,959 + -1.5 506,960 - -0.9 506,972 - -0.7 506,972 - +0.4 507,048 - -0.4 507,170 + -0.5 507,171 - +1.1 507,171 - +1.7 507,171 - -0.7 507,171 - +1.6 507,171 - +0.5 507,171 - +1.1 507,185 + -0.5 507,185 + +1.9 507,185 + +0.9 507,185 + +0.3 507,185 + -0.4 507,185 + -0.3 507,185 + -0.2 507,185 + -0.4 507,185 + +0.7 507,185 + -1.1 507,185 + +1.5 507,185 + -1.8 507,185 + -1.1 507,185 + -1.0 507,185 + +0.9 507,185 + -2.2 507,186 - +0.9 507,186 - +0.6 507,186 - +0.9 507,186 - +0.1 507,186 - -0.7 507,186 - -0.6 507,186 - +0.7 507,186 - +0.2 507,186 - -0.4 507,186 - +0.2 507,186 - -0.7 507,186 - -0.7 507,186 - -1.3 507,186 - -0.7 507,186 - +0.9 507,186 - -0.2 507,186 - -1.3 507,186 - +0.9 507,186 - +1.9 507,186 - +1.0 507,186 - +0.8 507,271 + OKGIIK_02160 0.28 +0.5 507,379 - OKGIIK_02160 0.50 +0.9 507,379 - OKGIIK_02160 0.50 +1.5 507,380 + OKGIIK_02160 0.50 +1.1 507,380 + OKGIIK_02160 0.50 -1.9 507,380 + OKGIIK_02160 0.50 +0.5 507,380 + OKGIIK_02160 0.50 -1.3 507,380 + OKGIIK_02160 0.50 -1.4 507,380 + OKGIIK_02160 0.50 +1.5 507,380 + OKGIIK_02160 0.50 -0.4 507,380 + OKGIIK_02160 0.50 +1.5 507,380 + OKGIIK_02160 0.50 -1.8 507,380 + OKGIIK_02160 0.50 -0.7 507,380 + OKGIIK_02160 0.50 -1.4 507,380 + OKGIIK_02160 0.50 +0.7 507,380 + OKGIIK_02160 0.50 +0.6 507,380 + OKGIIK_02160 0.50 -1.1 507,380 + OKGIIK_02160 0.50 -1.1 507,380 + OKGIIK_02160 0.50 -0.1 507,380 + OKGIIK_02160 0.50 +0.9 507,380 + OKGIIK_02160 0.50 +0.9 507,380 + OKGIIK_02160 0.50 +0.9 507,380 + OKGIIK_02160 0.50 -0.4 507,381 - OKGIIK_02160 0.50 -2.3 507,381 - OKGIIK_02160 0.50 +1.1 507,381 - OKGIIK_02160 0.50 -0.3 507,381 - OKGIIK_02160 0.50 -1.1 507,381 - OKGIIK_02160 0.50 +0.3 507,381 - OKGIIK_02160 0.50 -0.6 507,381 - OKGIIK_02160 0.50 -1.4 507,381 - OKGIIK_02160 0.50 +2.5 507,381 - OKGIIK_02160 0.50 -0.0 507,381 - OKGIIK_02160 0.50 -1.0 507,381 - OKGIIK_02160 0.50 -0.6 507,381 - OKGIIK_02160 0.50 -0.1 507,381 - OKGIIK_02160 0.50 -1.0 507,752 + -1.3 507,752 + +0.0 507,752 + +1.1 507,752 + +1.6 507,752 + -0.1 507,752 + -0.2 507,753 - +0.0 507,753 - +0.1 507,753 - -0.8 507,753 - -0.7 507,753 - -0.9 507,753 - -0.5 507,753 - +0.3 507,753 - +0.6 507,753 - +1.3 507,753 - +0.3 508,048 + OKGIIK_02165 0.60 -0.2 508,255 + +2.5 508,255 + +1.3 508,255 + -0.9 508,255 + -0.7 508,255 + -1.3 508,255 + -0.6 508,256 - -0.1 508,256 - +1.3 508,256 - -0.3 508,256 - +1.1 508,256 - +1.6 508,256 - -0.9 508,256 - -0.0 508,256 - -0.4 508,256 - +1.3 508,256 - -0.6 508,277 + -0.7 508,278 - -0.4 508,278 - -1.1 508,278 - +0.5 508,316 + -0.4 508,316 + -1.3 508,316 + +0.6 508,317 - -0.4 508,317 - +0.1 508,381 + -0.7 508,381 + +0.2 508,381 + +0.7 508,381 + +1.0 508,381 + -1.1 508,381 + -0.1 508,381 + +0.1 508,382 - -1.6 508,382 - -0.0 508,382 - +0.1 508,382 - -0.9 508,382 - -0.8
Or see this region's nucleotide sequence