Experiment: R2A_PIPES with Cobalt chloride 1024 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_01595 and ispA are separated by 919 nucleotides ispA and OKGIIK_01605 are separated by 60 nucleotides
OKGIIK_01595: OKGIIK_01595 - Polyisoprenoid-binding protein, at 361,243 to 361,818
_01595
OKGIIK_01600: ispA - octaprenyl-diphosphate synthase, at 362,738 to 363,742
ispA
OKGIIK_01605: OKGIIK_01605 - putative arabinose efflux permease, MFS family, at 363,803 to 365,077
_01605
Position (kb) 362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.966 kb on + strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 361.967 kb on - strand at 362.026 kb on + strand at 362.026 kb on + strand at 362.026 kb on + strand at 362.026 kb on + strand at 362.027 kb on - strand at 362.027 kb on - strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.716 kb on + strand at 362.717 kb on - strand at 363.773 kb on + strand at 363.774 kb on - strand at 363.774 kb on - strand at 363.775 kb on + strand at 363.775 kb on + strand at 363.776 kb on - strand at 363.776 kb on - strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.836 kb on + strand at 363.837 kb on - strand at 363.837 kb on - strand at 363.837 kb on - strand at 363.837 kb on - strand at 363.837 kb on - strand at 363.837 kb on - strand at 363.837 kb on - strand at 363.837 kb on - strand at 363.837 kb on - strand at 363.838 kb on + strand at 363.838 kb on + strand at 363.838 kb on + strand at 363.838 kb on + strand at 363.838 kb on + strand at 363.838 kb on + strand at 363.838 kb on + strand at 363.838 kb on + strand at 363.838 kb on + strand at 363.838 kb on + strand at 363.838 kb on + strand at 363.839 kb on - strand at 363.839 kb on - strand at 363.839 kb on - strand at 363.980 kb on + strand, within OKGIIK_01605 at 364.037 kb on + strand, within OKGIIK_01605 at 364.038 kb on - strand, within OKGIIK_01605 at 364.038 kb on - strand, within OKGIIK_01605 at 364.197 kb on + strand, within OKGIIK_01605 at 364.197 kb on + strand, within OKGIIK_01605 at 364.197 kb on + strand, within OKGIIK_01605 at 364.622 kb on + strand, within OKGIIK_01605 at 364.622 kb on + strand, within OKGIIK_01605 at 364.622 kb on + strand, within OKGIIK_01605 at 364.622 kb on + strand, within OKGIIK_01605 at 364.622 kb on + strand, within OKGIIK_01605 at 364.622 kb on + strand, within OKGIIK_01605 at 364.622 kb on + strand, within OKGIIK_01605 at 364.622 kb on + strand, within OKGIIK_01605 at 364.622 kb on + strand, within OKGIIK_01605 at 364.622 kb on + strand, within OKGIIK_01605 at 364.622 kb on + strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.623 kb on - strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.673 kb on + strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605 at 364.674 kb on - strand, within OKGIIK_01605
Per-strain Table
Position Strand Gene LocusTag Fraction R2A_PIPES with Cobalt chloride 1024 uM remove 361,966 + -0.2 361,966 + +0.7 361,966 + -0.7 361,966 + -1.9 361,966 + +1.9 361,966 + -0.4 361,966 + +0.2 361,966 + -0.2 361,966 + +1.8 361,966 + +0.3 361,966 + +1.9 361,966 + +0.1 361,966 + +0.6 361,966 + +1.6 361,967 - +1.7 361,967 - +1.1 361,967 - +0.1 361,967 - +0.4 361,967 - +0.3 361,967 - +1.9 361,967 - -1.1 361,967 - +1.4 361,967 - +0.4 361,967 - -0.1 362,026 + -0.5 362,026 + -0.5 362,026 + +0.8 362,026 + -0.7 362,027 - -2.3 362,027 - -1.2 362,716 + +0.3 362,716 + -0.3 362,716 + +1.9 362,716 + -0.1 362,716 + +0.1 362,716 + -2.1 362,716 + +0.2 362,716 + -0.9 362,716 + +2.8 362,716 + -1.4 362,717 - -1.8 363,773 + -1.2 363,774 - -0.9 363,774 - -1.1 363,775 + +1.1 363,775 + +2.2 363,776 - -0.4 363,776 - -0.4 363,836 + +0.2 363,836 + +0.9 363,836 + -0.7 363,836 + -0.7 363,836 + -1.4 363,836 + +1.5 363,836 + -0.4 363,836 + -1.7 363,836 + -0.4 363,836 + -0.5 363,836 + -0.6 363,836 + +0.7 363,836 + -1.0 363,836 + -1.0 363,837 - +0.2 363,837 - +1.6 363,837 - -0.7 363,837 - +0.6 363,837 - -0.4 363,837 - +0.6 363,837 - -0.5 363,837 - -1.2 363,837 - -2.0 363,838 + +0.9 363,838 + -1.2 363,838 + +0.1 363,838 + -0.4 363,838 + -0.4 363,838 + -1.0 363,838 + -0.2 363,838 + +0.1 363,838 + +0.6 363,838 + +0.6 363,838 + -0.1 363,839 - -0.5 363,839 - -0.6 363,839 - +0.6 363,980 + OKGIIK_01605 0.14 +2.2 364,037 + OKGIIK_01605 0.18 +1.5 364,038 - OKGIIK_01605 0.18 -2.1 364,038 - OKGIIK_01605 0.18 -0.2 364,197 + OKGIIK_01605 0.31 -0.7 364,197 + OKGIIK_01605 0.31 +0.3 364,197 + OKGIIK_01605 0.31 -0.1 364,622 + OKGIIK_01605 0.64 -0.3 364,622 + OKGIIK_01605 0.64 -0.2 364,622 + OKGIIK_01605 0.64 -0.1 364,622 + OKGIIK_01605 0.64 -0.7 364,622 + OKGIIK_01605 0.64 -0.7 364,622 + OKGIIK_01605 0.64 -0.4 364,622 + OKGIIK_01605 0.64 +0.3 364,622 + OKGIIK_01605 0.64 +0.3 364,622 + OKGIIK_01605 0.64 +1.1 364,622 + OKGIIK_01605 0.64 +0.1 364,622 + OKGIIK_01605 0.64 -0.9 364,623 - OKGIIK_01605 0.64 -3.3 364,623 - OKGIIK_01605 0.64 -1.4 364,623 - OKGIIK_01605 0.64 -0.4 364,623 - OKGIIK_01605 0.64 -1.1 364,623 - OKGIIK_01605 0.64 +0.9 364,623 - OKGIIK_01605 0.64 +0.3 364,623 - OKGIIK_01605 0.64 -0.1 364,623 - OKGIIK_01605 0.64 -0.4 364,623 - OKGIIK_01605 0.64 -0.1 364,623 - OKGIIK_01605 0.64 -0.1 364,623 - OKGIIK_01605 0.64 -0.9 364,623 - OKGIIK_01605 0.64 -0.7 364,673 + OKGIIK_01605 0.68 +1.6 364,673 + OKGIIK_01605 0.68 -1.2 364,673 + OKGIIK_01605 0.68 -0.1 364,673 + OKGIIK_01605 0.68 -0.7 364,673 + OKGIIK_01605 0.68 -1.5 364,673 + OKGIIK_01605 0.68 -0.1 364,673 + OKGIIK_01605 0.68 -1.7 364,673 + OKGIIK_01605 0.68 +0.8 364,673 + OKGIIK_01605 0.68 +0.6 364,673 + OKGIIK_01605 0.68 -0.7 364,673 + OKGIIK_01605 0.68 +0.1 364,673 + OKGIIK_01605 0.68 -0.4 364,673 + OKGIIK_01605 0.68 +1.2 364,673 + OKGIIK_01605 0.68 -1.7 364,673 + OKGIIK_01605 0.68 -0.4 364,673 + OKGIIK_01605 0.68 -0.9 364,673 + OKGIIK_01605 0.68 -0.4 364,673 + OKGIIK_01605 0.68 -0.1 364,673 + OKGIIK_01605 0.68 +0.3 364,673 + OKGIIK_01605 0.68 -0.1 364,673 + OKGIIK_01605 0.68 -0.9 364,673 + OKGIIK_01605 0.68 +0.7 364,673 + OKGIIK_01605 0.68 +0.1 364,673 + OKGIIK_01605 0.68 -1.1 364,673 + OKGIIK_01605 0.68 +0.3 364,674 - OKGIIK_01605 0.68 -0.1 364,674 - OKGIIK_01605 0.68 +0.1 364,674 - OKGIIK_01605 0.68 +0.5 364,674 - OKGIIK_01605 0.68 -1.2 364,674 - OKGIIK_01605 0.68 +0.9 364,674 - OKGIIK_01605 0.68 +0.3 364,674 - OKGIIK_01605 0.68 +0.2 364,674 - OKGIIK_01605 0.68 +0.5 364,674 - OKGIIK_01605 0.68 -0.4 364,674 - OKGIIK_01605 0.68 +0.1 364,674 - OKGIIK_01605 0.68 -0.2 364,674 - OKGIIK_01605 0.68 -0.7 364,674 - OKGIIK_01605 0.68 -0.9 364,674 - OKGIIK_01605 0.68 -0.4 364,674 - OKGIIK_01605 0.68 -0.9 364,674 - OKGIIK_01605 0.68 -1.1 364,674 - OKGIIK_01605 0.68 -1.1 364,674 - OKGIIK_01605 0.68 -1.5 364,674 - OKGIIK_01605 0.68 +0.7 364,674 - OKGIIK_01605 0.68 +0.1 364,674 - OKGIIK_01605 0.68 -0.4 364,674 - OKGIIK_01605 0.68 +0.2 364,674 - OKGIIK_01605 0.68 +0.5 364,674 - OKGIIK_01605 0.68 +0.8 364,674 - OKGIIK_01605 0.68 -0.1 364,674 - OKGIIK_01605 0.68 +1.3 364,674 - OKGIIK_01605 0.68 -0.1
Or see this region's nucleotide sequence