Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06910 and MPMX19_06911 overlap by 4 nucleotides MPMX19_06911 and MPMX19_06912 are separated by 1 nucleotides MPMX19_06912 and MPMX19_06913 are separated by 103 nucleotides
MPMX19_06910: MPMX19_06910 - hypothetical protein, at 185,838 to 186,872
_06910
MPMX19_06911: MPMX19_06911 - Lipopolysaccharide export system ATP-binding protein LptB, at 186,869 to 187,624
_06911
MPMX19_06912: MPMX19_06912 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 187,626 to 188,369
_06912
MPMX19_06913: MPMX19_06913 - D-galactarolactone cycloisomerase, at 188,473 to 189,573
_06913
Position (kb) 187
188
189 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 186.684 kb on + strand, within MPMX19_06910 at 186.685 kb on - strand, within MPMX19_06910 at 187.023 kb on - strand, within MPMX19_06911 at 187.023 kb on - strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.025 kb on + strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.026 kb on - strand, within MPMX19_06911 at 187.295 kb on + strand, within MPMX19_06911 at 187.296 kb on - strand, within MPMX19_06911 at 187.296 kb on - strand, within MPMX19_06911 at 187.498 kb on + strand, within MPMX19_06911 at 187.498 kb on + strand, within MPMX19_06911 at 187.499 kb on - strand, within MPMX19_06911 at 187.610 kb on + strand at 187.610 kb on + strand at 187.610 kb on + strand at 187.610 kb on + strand at 187.610 kb on + strand at 187.610 kb on + strand at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.965 kb on + strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 187.966 kb on - strand, within MPMX19_06912 at 188.010 kb on + strand, within MPMX19_06912 at 188.010 kb on + strand, within MPMX19_06912 at 188.010 kb on + strand, within MPMX19_06912 at 188.010 kb on + strand, within MPMX19_06912 at 188.010 kb on + strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.011 kb on - strand, within MPMX19_06912 at 188.265 kb on + strand, within MPMX19_06912 at 188.265 kb on + strand, within MPMX19_06912 at 188.265 kb on + strand, within MPMX19_06912 at 188.266 kb on - strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.271 kb on + strand, within MPMX19_06912 at 188.272 kb on - strand, within MPMX19_06912 at 188.272 kb on - strand, within MPMX19_06912 at 188.272 kb on - strand, within MPMX19_06912 at 188.349 kb on + strand at 188.350 kb on - strand at 188.350 kb on - strand at 188.572 kb on + strand at 188.572 kb on + strand at 188.572 kb on + strand at 188.572 kb on + strand at 188.573 kb on - strand at 188.573 kb on - strand at 188.573 kb on - strand at 188.573 kb on - strand at 188.632 kb on + strand, within MPMX19_06913 at 188.632 kb on + strand, within MPMX19_06913 at 188.632 kb on + strand, within MPMX19_06913 at 188.632 kb on + strand, within MPMX19_06913 at 188.633 kb on - strand, within MPMX19_06913 at 188.776 kb on + strand, within MPMX19_06913 at 188.777 kb on - strand, within MPMX19_06913 at 188.777 kb on - strand, within MPMX19_06913 at 188.777 kb on - strand, within MPMX19_06913 at 188.777 kb on - strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.884 kb on + strand, within MPMX19_06913 at 188.885 kb on - strand, within MPMX19_06913 at 188.885 kb on - strand, within MPMX19_06913 at 188.885 kb on - strand, within MPMX19_06913 at 189.189 kb on + strand, within MPMX19_06913 at 189.190 kb on - strand, within MPMX19_06913 at 189.259 kb on + strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.260 kb on - strand, within MPMX19_06913 at 189.361 kb on + strand, within MPMX19_06913 at 189.362 kb on + strand, within MPMX19_06913
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 186,684 + MPMX19_06910 0.82 -2.2 186,685 - MPMX19_06910 0.82 -0.4 187,023 - MPMX19_06911 0.20 -0.3 187,023 - MPMX19_06911 0.20 -0.3 187,025 + MPMX19_06911 0.21 -0.5 187,025 + MPMX19_06911 0.21 -3.0 187,025 + MPMX19_06911 0.21 -2.7 187,025 + MPMX19_06911 0.21 -0.7 187,025 + MPMX19_06911 0.21 +0.1 187,025 + MPMX19_06911 0.21 -0.1 187,026 - MPMX19_06911 0.21 -1.0 187,026 - MPMX19_06911 0.21 -0.9 187,026 - MPMX19_06911 0.21 -0.3 187,026 - MPMX19_06911 0.21 -1.1 187,026 - MPMX19_06911 0.21 -0.0 187,026 - MPMX19_06911 0.21 -0.3 187,295 + MPMX19_06911 0.56 -0.5 187,296 - MPMX19_06911 0.56 -0.9 187,296 - MPMX19_06911 0.56 +0.2 187,498 + MPMX19_06911 0.83 -0.5 187,498 + MPMX19_06911 0.83 -1.2 187,499 - MPMX19_06911 0.83 -0.9 187,610 + +0.2 187,610 + +0.2 187,610 + -0.5 187,610 + -1.0 187,610 + +0.5 187,610 + -0.7 187,965 + MPMX19_06912 0.46 -0.7 187,965 + MPMX19_06912 0.46 +0.1 187,965 + MPMX19_06912 0.46 -0.1 187,965 + MPMX19_06912 0.46 +0.4 187,965 + MPMX19_06912 0.46 +0.2 187,965 + MPMX19_06912 0.46 -0.2 187,965 + MPMX19_06912 0.46 -0.2 187,965 + MPMX19_06912 0.46 -0.0 187,965 + MPMX19_06912 0.46 -1.3 187,965 + MPMX19_06912 0.46 -1.8 187,965 + MPMX19_06912 0.46 +0.1 187,966 - MPMX19_06912 0.46 -1.3 187,966 - MPMX19_06912 0.46 -0.8 187,966 - MPMX19_06912 0.46 -1.2 187,966 - MPMX19_06912 0.46 -0.2 187,966 - MPMX19_06912 0.46 +1.3 187,966 - MPMX19_06912 0.46 -0.0 187,966 - MPMX19_06912 0.46 +1.2 187,966 - MPMX19_06912 0.46 -0.5 188,010 + MPMX19_06912 0.52 +0.8 188,010 + MPMX19_06912 0.52 +1.1 188,010 + MPMX19_06912 0.52 -0.3 188,010 + MPMX19_06912 0.52 -0.7 188,010 + MPMX19_06912 0.52 -0.1 188,011 - MPMX19_06912 0.52 -0.1 188,011 - MPMX19_06912 0.52 +0.7 188,011 - MPMX19_06912 0.52 -0.0 188,011 - MPMX19_06912 0.52 -0.9 188,011 - MPMX19_06912 0.52 -0.4 188,011 - MPMX19_06912 0.52 -1.5 188,265 + MPMX19_06912 0.86 -1.8 188,265 + MPMX19_06912 0.86 +0.5 188,265 + MPMX19_06912 0.86 +0.7 188,266 - MPMX19_06912 0.86 +1.7 188,271 + MPMX19_06912 0.87 -0.3 188,271 + MPMX19_06912 0.87 -0.3 188,271 + MPMX19_06912 0.87 +0.8 188,271 + MPMX19_06912 0.87 +1.2 188,271 + MPMX19_06912 0.87 +0.2 188,271 + MPMX19_06912 0.87 -0.2 188,272 - MPMX19_06912 0.87 +0.3 188,272 - MPMX19_06912 0.87 +0.7 188,272 - MPMX19_06912 0.87 +0.2 188,349 + +0.8 188,350 - -0.0 188,350 - +1.1 188,572 + -0.2 188,572 + +0.3 188,572 + +1.1 188,572 + +0.8 188,573 - -0.3 188,573 - -0.5 188,573 - +2.0 188,573 - +0.3 188,632 + MPMX19_06913 0.14 +0.7 188,632 + MPMX19_06913 0.14 -0.9 188,632 + MPMX19_06913 0.14 -0.0 188,632 + MPMX19_06913 0.14 -0.3 188,633 - MPMX19_06913 0.15 +0.3 188,776 + MPMX19_06913 0.28 +0.3 188,777 - MPMX19_06913 0.28 -0.2 188,777 - MPMX19_06913 0.28 -0.9 188,777 - MPMX19_06913 0.28 -1.2 188,777 - MPMX19_06913 0.28 -0.5 188,884 + MPMX19_06913 0.37 -0.5 188,884 + MPMX19_06913 0.37 -0.2 188,884 + MPMX19_06913 0.37 -0.5 188,884 + MPMX19_06913 0.37 -2.5 188,884 + MPMX19_06913 0.37 +0.8 188,884 + MPMX19_06913 0.37 +0.1 188,885 - MPMX19_06913 0.37 -0.9 188,885 - MPMX19_06913 0.37 -0.4 188,885 - MPMX19_06913 0.37 -1.5 189,189 + MPMX19_06913 0.65 -0.4 189,190 - MPMX19_06913 0.65 +0.3 189,259 + MPMX19_06913 0.71 -0.8 189,260 - MPMX19_06913 0.71 -0.0 189,260 - MPMX19_06913 0.71 -0.5 189,260 - MPMX19_06913 0.71 -0.7 189,260 - MPMX19_06913 0.71 +0.9 189,260 - MPMX19_06913 0.71 +0.3 189,260 - MPMX19_06913 0.71 -1.2 189,260 - MPMX19_06913 0.71 +1.3 189,361 + MPMX19_06913 0.81 -1.2 189,362 + MPMX19_06913 0.81 -1.3
Or see this region's nucleotide sequence