Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06752 and MPMX19_06753 are separated by 38 nucleotides MPMX19_06753 and MPMX19_06754 are separated by 101 nucleotides
MPMX19_06752: MPMX19_06752 - hypothetical protein, at 17,829 to 18,836
_06752
MPMX19_06753: MPMX19_06753 - Guanidinopropionase, at 18,875 to 19,891
_06753
MPMX19_06754: MPMX19_06754 - hypothetical protein, at 19,993 to 20,913
_06754
Position (kb) 18
19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.983 kb on + strand, within MPMX19_06752 at 18.119 kb on - strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.505 kb on + strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.506 kb on - strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.676 kb on + strand, within MPMX19_06752 at 18.677 kb on - strand, within MPMX19_06752 at 18.850 kb on + strand at 18.851 kb on - strand at 18.851 kb on - strand at 19.134 kb on + strand, within MPMX19_06753 at 19.134 kb on + strand, within MPMX19_06753 at 19.134 kb on + strand, within MPMX19_06753 at 19.135 kb on - strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.263 kb on + strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.264 kb on - strand, within MPMX19_06753 at 19.312 kb on - strand, within MPMX19_06753 at 19.312 kb on - strand, within MPMX19_06753 at 19.353 kb on + strand, within MPMX19_06753 at 19.353 kb on + strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.354 kb on - strand, within MPMX19_06753 at 19.371 kb on + strand, within MPMX19_06753 at 19.372 kb on - strand, within MPMX19_06753 at 19.372 kb on - strand, within MPMX19_06753 at 19.452 kb on + strand, within MPMX19_06753 at 19.515 kb on + strand, within MPMX19_06753 at 19.515 kb on + strand, within MPMX19_06753 at 19.803 kb on + strand at 19.803 kb on + strand at 19.803 kb on + strand at 19.932 kb on - strand at 19.932 kb on - strand at 19.932 kb on - strand at 19.949 kb on - strand at 19.949 kb on - strand at 19.989 kb on + strand at 19.989 kb on + strand at 19.989 kb on + strand at 19.989 kb on + strand at 19.990 kb on - strand at 19.990 kb on - strand at 19.990 kb on - strand at 19.990 kb on - strand at 19.990 kb on - strand at 20.157 kb on + strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.158 kb on - strand, within MPMX19_06754 at 20.215 kb on + strand, within MPMX19_06754 at 20.215 kb on + strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.216 kb on - strand, within MPMX19_06754 at 20.218 kb on - strand, within MPMX19_06754 at 20.367 kb on - strand, within MPMX19_06754 at 20.608 kb on + strand, within MPMX19_06754 at 20.608 kb on + strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.609 kb on - strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.641 kb on + strand, within MPMX19_06754 at 20.642 kb on - strand, within MPMX19_06754 at 20.642 kb on - strand, within MPMX19_06754 at 20.680 kb on + strand, within MPMX19_06754 at 20.681 kb on - strand, within MPMX19_06754 at 20.681 kb on - strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.758 kb on + strand, within MPMX19_06754 at 20.759 kb on - strand, within MPMX19_06754
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 17,983 + MPMX19_06752 0.15 +1.4 18,119 - MPMX19_06752 0.29 +0.7 18,505 + MPMX19_06752 0.67 -0.7 18,505 + MPMX19_06752 0.67 -2.2 18,505 + MPMX19_06752 0.67 -0.8 18,505 + MPMX19_06752 0.67 -0.0 18,506 - MPMX19_06752 0.67 -1.7 18,506 - MPMX19_06752 0.67 +0.7 18,506 - MPMX19_06752 0.67 +0.5 18,506 - MPMX19_06752 0.67 +0.2 18,676 + MPMX19_06752 0.84 -0.8 18,676 + MPMX19_06752 0.84 -0.0 18,676 + MPMX19_06752 0.84 +2.1 18,676 + MPMX19_06752 0.84 +0.4 18,676 + MPMX19_06752 0.84 +0.2 18,677 - MPMX19_06752 0.84 -0.4 18,850 + -3.1 18,851 - -0.3 18,851 - +0.7 19,134 + MPMX19_06753 0.25 -0.4 19,134 + MPMX19_06753 0.25 +0.4 19,134 + MPMX19_06753 0.25 -0.9 19,135 - MPMX19_06753 0.26 +0.5 19,263 + MPMX19_06753 0.38 +0.2 19,263 + MPMX19_06753 0.38 +0.8 19,263 + MPMX19_06753 0.38 +0.0 19,263 + MPMX19_06753 0.38 -0.9 19,263 + MPMX19_06753 0.38 +1.1 19,263 + MPMX19_06753 0.38 -0.3 19,263 + MPMX19_06753 0.38 -0.6 19,263 + MPMX19_06753 0.38 +0.1 19,263 + MPMX19_06753 0.38 -0.3 19,263 + MPMX19_06753 0.38 -0.3 19,264 - MPMX19_06753 0.38 +0.7 19,264 - MPMX19_06753 0.38 -0.5 19,264 - MPMX19_06753 0.38 -1.0 19,264 - MPMX19_06753 0.38 +0.0 19,264 - MPMX19_06753 0.38 -0.5 19,264 - MPMX19_06753 0.38 +0.2 19,264 - MPMX19_06753 0.38 +0.7 19,264 - MPMX19_06753 0.38 +0.4 19,312 - MPMX19_06753 0.43 -0.8 19,312 - MPMX19_06753 0.43 -1.3 19,353 + MPMX19_06753 0.47 -0.9 19,353 + MPMX19_06753 0.47 +0.3 19,354 - MPMX19_06753 0.47 +1.0 19,354 - MPMX19_06753 0.47 -1.5 19,354 - MPMX19_06753 0.47 +0.2 19,354 - MPMX19_06753 0.47 +0.7 19,354 - MPMX19_06753 0.47 -0.9 19,371 + MPMX19_06753 0.49 -2.3 19,372 - MPMX19_06753 0.49 +0.4 19,372 - MPMX19_06753 0.49 +0.3 19,452 + MPMX19_06753 0.57 +0.8 19,515 + MPMX19_06753 0.63 -1.3 19,515 + MPMX19_06753 0.63 +1.3 19,803 + -0.4 19,803 + -1.2 19,803 + -2.3 19,932 - -1.8 19,932 - +0.2 19,932 - -0.2 19,949 - +0.1 19,949 - +0.2 19,989 + -1.7 19,989 + -1.3 19,989 + -1.3 19,989 + +0.1 19,990 - -0.5 19,990 - +0.7 19,990 - -0.9 19,990 - +0.3 19,990 - +0.0 20,157 + MPMX19_06754 0.18 -0.2 20,158 - MPMX19_06754 0.18 -0.3 20,158 - MPMX19_06754 0.18 -0.4 20,158 - MPMX19_06754 0.18 -0.3 20,158 - MPMX19_06754 0.18 -1.3 20,215 + MPMX19_06754 0.24 -0.1 20,215 + MPMX19_06754 0.24 -1.2 20,216 - MPMX19_06754 0.24 -0.5 20,216 - MPMX19_06754 0.24 -0.2 20,216 - MPMX19_06754 0.24 -1.3 20,216 - MPMX19_06754 0.24 -0.2 20,216 - MPMX19_06754 0.24 +2.0 20,218 - MPMX19_06754 0.24 -2.4 20,367 - MPMX19_06754 0.41 -1.5 20,608 + MPMX19_06754 0.67 -1.9 20,608 + MPMX19_06754 0.67 +0.7 20,609 - MPMX19_06754 0.67 +0.2 20,609 - MPMX19_06754 0.67 +0.4 20,609 - MPMX19_06754 0.67 -0.3 20,609 - MPMX19_06754 0.67 -0.8 20,641 + MPMX19_06754 0.70 -1.5 20,641 + MPMX19_06754 0.70 -1.0 20,641 + MPMX19_06754 0.70 -0.8 20,641 + MPMX19_06754 0.70 -2.5 20,641 + MPMX19_06754 0.70 +0.4 20,642 - MPMX19_06754 0.70 +0.6 20,642 - MPMX19_06754 0.70 +0.1 20,680 + MPMX19_06754 0.75 -1.6 20,681 - MPMX19_06754 0.75 -0.3 20,681 - MPMX19_06754 0.75 +0.4 20,758 + MPMX19_06754 0.83 -0.2 20,758 + MPMX19_06754 0.83 +0.9 20,758 + MPMX19_06754 0.83 -0.2 20,759 - MPMX19_06754 0.83 -1.2
Or see this region's nucleotide sequence