Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06518 and MPMX19_06519 are separated by 31 nucleotides MPMX19_06519 and MPMX19_06520 are separated by 204 nucleotides MPMX19_06520 and MPMX19_06521 are separated by 51 nucleotides
MPMX19_06518: MPMX19_06518 - Methionine import system permease protein MetP, at 303,677 to 304,333
_06518
MPMX19_06519: MPMX19_06519 - HTH-type transcriptional repressor NagR, at 304,365 to 305,084
_06519
MPMX19_06520: MPMX19_06520 - Nitrate import ATP-binding protein NrtC, at 305,289 to 306,131
_06520
MPMX19_06521: MPMX19_06521 - Putative aliphatic sulfonates-binding protein, at 306,183 to 307,202
_06521
Position (kb) 305
306
307 Strain fitness (log2 ratio) -2
-1
0
1
2 at 304.367 kb on - strand at 304.399 kb on + strand at 304.597 kb on + strand, within MPMX19_06519 at 304.597 kb on + strand, within MPMX19_06519 at 304.597 kb on + strand, within MPMX19_06519 at 304.597 kb on + strand, within MPMX19_06519 at 305.050 kb on + strand at 305.050 kb on + strand at 305.177 kb on + strand at 305.178 kb on - strand at 305.178 kb on - strand at 305.403 kb on + strand, within MPMX19_06520 at 305.404 kb on - strand, within MPMX19_06520 at 305.595 kb on + strand, within MPMX19_06520 at 305.595 kb on + strand, within MPMX19_06520 at 305.596 kb on - strand, within MPMX19_06520 at 305.596 kb on - strand, within MPMX19_06520 at 305.596 kb on - strand, within MPMX19_06520 at 305.705 kb on + strand, within MPMX19_06520 at 305.706 kb on - strand, within MPMX19_06520 at 306.223 kb on - strand at 306.223 kb on - strand at 306.223 kb on - strand at 306.357 kb on + strand, within MPMX19_06521 at 306.357 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.450 kb on + strand, within MPMX19_06521 at 306.471 kb on + strand, within MPMX19_06521 at 306.471 kb on + strand, within MPMX19_06521 at 306.522 kb on + strand, within MPMX19_06521 at 306.522 kb on + strand, within MPMX19_06521 at 306.523 kb on - strand, within MPMX19_06521 at 306.843 kb on + strand, within MPMX19_06521 at 306.843 kb on + strand, within MPMX19_06521
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 304,367 - +1.5 304,399 + -0.4 304,597 + MPMX19_06519 0.32 -0.2 304,597 + MPMX19_06519 0.32 -1.0 304,597 + MPMX19_06519 0.32 -0.6 304,597 + MPMX19_06519 0.32 +0.2 305,050 + -1.3 305,050 + -1.5 305,177 + +0.4 305,178 - -0.4 305,178 - -1.0 305,403 + MPMX19_06520 0.14 -1.0 305,404 - MPMX19_06520 0.14 -1.2 305,595 + MPMX19_06520 0.36 +0.8 305,595 + MPMX19_06520 0.36 +0.0 305,596 - MPMX19_06520 0.36 +1.2 305,596 - MPMX19_06520 0.36 +0.7 305,596 - MPMX19_06520 0.36 +1.5 305,705 + MPMX19_06520 0.49 -0.3 305,706 - MPMX19_06520 0.49 -1.2 306,223 - +0.6 306,223 - -0.7 306,223 - +0.6 306,357 + MPMX19_06521 0.17 -0.0 306,357 + MPMX19_06521 0.17 -1.6 306,450 + MPMX19_06521 0.26 +0.3 306,450 + MPMX19_06521 0.26 -0.5 306,450 + MPMX19_06521 0.26 -1.0 306,450 + MPMX19_06521 0.26 +0.8 306,450 + MPMX19_06521 0.26 -0.5 306,450 + MPMX19_06521 0.26 -1.8 306,450 + MPMX19_06521 0.26 -1.6 306,450 + MPMX19_06521 0.26 +0.3 306,450 + MPMX19_06521 0.26 +0.7 306,471 + MPMX19_06521 0.28 +1.8 306,471 + MPMX19_06521 0.28 +1.8 306,522 + MPMX19_06521 0.33 -1.8 306,522 + MPMX19_06521 0.33 -0.2 306,523 - MPMX19_06521 0.33 -0.6 306,843 + MPMX19_06521 0.65 -1.2 306,843 + MPMX19_06521 0.65 -1.7
Or see this region's nucleotide sequence