Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06474 and MPMX19_06475 are separated by 6 nucleotides MPMX19_06475 and MPMX19_06476 are separated by 128 nucleotides MPMX19_06476 and MPMX19_06477 are separated by 30 nucleotides
MPMX19_06474: MPMX19_06474 - Vitamin B12 import ATP-binding protein BtuD, at 258,047 to 258,910
_06474
MPMX19_06475: MPMX19_06475 - Putative aliphatic sulfonates transport permease protein SsuC, at 258,917 to 259,744
_06475
MPMX19_06476: MPMX19_06476 - HTH-type transcriptional regulator ArgP, at 259,873 to 260,790
_06476
MPMX19_06477: MPMX19_06477 - Putative aliphatic sulfonates-binding protein, at 260,821 to 261,804
_06477
Position (kb)
259
260
261 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 259.137 kb on + strand, within MPMX19_06475 at 259.278 kb on + strand, within MPMX19_06475 at 259.278 kb on + strand, within MPMX19_06475 at 259.278 kb on + strand, within MPMX19_06475 at 259.278 kb on + strand, within MPMX19_06475 at 259.279 kb on - strand, within MPMX19_06475 at 259.307 kb on + strand, within MPMX19_06475 at 259.307 kb on + strand, within MPMX19_06475 at 259.307 kb on + strand, within MPMX19_06475 at 259.308 kb on - strand, within MPMX19_06475 at 259.308 kb on - strand, within MPMX19_06475 at 259.308 kb on - strand, within MPMX19_06475 at 259.308 kb on - strand, within MPMX19_06475 at 259.308 kb on - strand, within MPMX19_06475 at 259.651 kb on + strand, within MPMX19_06475 at 259.651 kb on + strand, within MPMX19_06475 at 259.651 kb on + strand, within MPMX19_06475 at 259.651 kb on + strand, within MPMX19_06475 at 259.652 kb on - strand, within MPMX19_06475 at 259.778 kb on - strand at 260.014 kb on + strand, within MPMX19_06476 at 260.015 kb on - strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.571 kb on - strand, within MPMX19_06476 at 260.571 kb on - strand, within MPMX19_06476 at 260.571 kb on - strand, within MPMX19_06476 at 260.571 kb on - strand, within MPMX19_06476 at 261.143 kb on + strand, within MPMX19_06477 at 261.143 kb on + strand, within MPMX19_06477 at 261.143 kb on + strand, within MPMX19_06477 at 261.144 kb on - strand, within MPMX19_06477 at 261.144 kb on - strand, within MPMX19_06477 at 261.144 kb on - strand, within MPMX19_06477 at 261.144 kb on - strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.218 kb on + strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.219 kb on - strand, within MPMX19_06477 at 261.351 kb on - strand, within MPMX19_06477 at 261.351 kb on - strand, within MPMX19_06477 at 261.394 kb on + strand, within MPMX19_06477 at 261.394 kb on + strand, within MPMX19_06477 at 261.394 kb on + strand, within MPMX19_06477 at 261.394 kb on + strand, within MPMX19_06477 at 261.394 kb on + strand, within MPMX19_06477 at 261.394 kb on + strand, within MPMX19_06477 at 261.394 kb on + strand, within MPMX19_06477 at 261.530 kb on + strand, within MPMX19_06477 at 261.530 kb on + strand, within MPMX19_06477 at 261.530 kb on + strand, within MPMX19_06477 at 261.531 kb on - strand, within MPMX19_06477 at 261.531 kb on - strand, within MPMX19_06477 at 261.653 kb on - strand, within MPMX19_06477 at 261.653 kb on - strand, within MPMX19_06477
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 259,137 + MPMX19_06475 0.27 +1.6 259,278 + MPMX19_06475 0.44 +0.1 259,278 + MPMX19_06475 0.44 -0.2 259,278 + MPMX19_06475 0.44 -0.9 259,278 + MPMX19_06475 0.44 -0.8 259,279 - MPMX19_06475 0.44 +0.5 259,307 + MPMX19_06475 0.47 +0.6 259,307 + MPMX19_06475 0.47 +0.3 259,307 + MPMX19_06475 0.47 -1.6 259,308 - MPMX19_06475 0.47 -0.7 259,308 - MPMX19_06475 0.47 +0.9 259,308 - MPMX19_06475 0.47 -0.8 259,308 - MPMX19_06475 0.47 -2.7 259,308 - MPMX19_06475 0.47 +2.2 259,651 + MPMX19_06475 0.89 -0.4 259,651 + MPMX19_06475 0.89 -0.3 259,651 + MPMX19_06475 0.89 +0.6 259,651 + MPMX19_06475 0.89 -1.3 259,652 - MPMX19_06475 0.89 +0.4 259,778 - +0.2 260,014 + MPMX19_06476 0.15 -1.3 260,015 - MPMX19_06476 0.15 -1.6 260,275 + MPMX19_06476 0.44 -1.0 260,275 + MPMX19_06476 0.44 -0.0 260,275 + MPMX19_06476 0.44 +2.4 260,275 + MPMX19_06476 0.44 +0.2 260,275 + MPMX19_06476 0.44 +1.1 260,275 + MPMX19_06476 0.44 +1.3 260,275 + MPMX19_06476 0.44 -0.3 260,275 + MPMX19_06476 0.44 -1.8 260,275 + MPMX19_06476 0.44 +0.3 260,276 - MPMX19_06476 0.44 +0.6 260,276 - MPMX19_06476 0.44 +0.1 260,276 - MPMX19_06476 0.44 +0.4 260,276 - MPMX19_06476 0.44 +0.2 260,276 - MPMX19_06476 0.44 +0.6 260,276 - MPMX19_06476 0.44 +0.1 260,276 - MPMX19_06476 0.44 -0.5 260,276 - MPMX19_06476 0.44 +0.4 260,276 - MPMX19_06476 0.44 -0.5 260,276 - MPMX19_06476 0.44 +1.1 260,276 - MPMX19_06476 0.44 -0.6 260,276 - MPMX19_06476 0.44 +0.8 260,276 - MPMX19_06476 0.44 -1.9 260,571 - MPMX19_06476 0.76 +0.5 260,571 - MPMX19_06476 0.76 +0.1 260,571 - MPMX19_06476 0.76 -0.3 260,571 - MPMX19_06476 0.76 -2.3 261,143 + MPMX19_06477 0.33 -1.2 261,143 + MPMX19_06477 0.33 -0.5 261,143 + MPMX19_06477 0.33 -2.3 261,144 - MPMX19_06477 0.33 -2.4 261,144 - MPMX19_06477 0.33 -0.7 261,144 - MPMX19_06477 0.33 -1.4 261,144 - MPMX19_06477 0.33 -0.2 261,218 + MPMX19_06477 0.40 -0.3 261,218 + MPMX19_06477 0.40 -0.2 261,218 + MPMX19_06477 0.40 -0.7 261,218 + MPMX19_06477 0.40 -1.8 261,218 + MPMX19_06477 0.40 +0.5 261,218 + MPMX19_06477 0.40 +1.3 261,218 + MPMX19_06477 0.40 -0.3 261,218 + MPMX19_06477 0.40 -0.3 261,218 + MPMX19_06477 0.40 -0.6 261,218 + MPMX19_06477 0.40 -1.9 261,218 + MPMX19_06477 0.40 -0.7 261,218 + MPMX19_06477 0.40 -0.6 261,218 + MPMX19_06477 0.40 -2.3 261,218 + MPMX19_06477 0.40 -2.0 261,218 + MPMX19_06477 0.40 -1.2 261,218 + MPMX19_06477 0.40 +0.1 261,218 + MPMX19_06477 0.40 +0.2 261,218 + MPMX19_06477 0.40 +0.2 261,218 + MPMX19_06477 0.40 -0.9 261,218 + MPMX19_06477 0.40 -1.0 261,218 + MPMX19_06477 0.40 -0.7 261,218 + MPMX19_06477 0.40 +1.2 261,218 + MPMX19_06477 0.40 +0.4 261,218 + MPMX19_06477 0.40 -0.6 261,218 + MPMX19_06477 0.40 +1.2 261,218 + MPMX19_06477 0.40 +0.4 261,218 + MPMX19_06477 0.40 +1.6 261,218 + MPMX19_06477 0.40 +1.3 261,218 + MPMX19_06477 0.40 -0.6 261,218 + MPMX19_06477 0.40 -1.4 261,219 - MPMX19_06477 0.40 -0.8 261,219 - MPMX19_06477 0.40 +0.5 261,219 - MPMX19_06477 0.40 +0.4 261,219 - MPMX19_06477 0.40 +1.1 261,219 - MPMX19_06477 0.40 -0.6 261,219 - MPMX19_06477 0.40 -0.1 261,219 - MPMX19_06477 0.40 +0.3 261,219 - MPMX19_06477 0.40 -1.5 261,219 - MPMX19_06477 0.40 +0.7 261,219 - MPMX19_06477 0.40 -1.5 261,219 - MPMX19_06477 0.40 -0.5 261,219 - MPMX19_06477 0.40 -0.2 261,219 - MPMX19_06477 0.40 +0.3 261,219 - MPMX19_06477 0.40 +0.4 261,219 - MPMX19_06477 0.40 -0.6 261,219 - MPMX19_06477 0.40 -0.0 261,219 - MPMX19_06477 0.40 +1.1 261,219 - MPMX19_06477 0.40 -0.5 261,219 - MPMX19_06477 0.40 -0.1 261,219 - MPMX19_06477 0.40 +0.5 261,219 - MPMX19_06477 0.40 -0.2 261,219 - MPMX19_06477 0.40 +0.9 261,219 - MPMX19_06477 0.40 -0.2 261,219 - MPMX19_06477 0.40 -2.1 261,219 - MPMX19_06477 0.40 +0.8 261,219 - MPMX19_06477 0.40 +0.4 261,219 - MPMX19_06477 0.40 -0.7 261,219 - MPMX19_06477 0.40 -1.0 261,219 - MPMX19_06477 0.40 -2.5 261,219 - MPMX19_06477 0.40 -1.8 261,219 - MPMX19_06477 0.40 +0.2 261,351 - MPMX19_06477 0.54 +1.2 261,351 - MPMX19_06477 0.54 -0.9 261,394 + MPMX19_06477 0.58 -0.1 261,394 + MPMX19_06477 0.58 -0.4 261,394 + MPMX19_06477 0.58 +0.0 261,394 + MPMX19_06477 0.58 -0.2 261,394 + MPMX19_06477 0.58 -1.5 261,394 + MPMX19_06477 0.58 +0.8 261,394 + MPMX19_06477 0.58 +2.0 261,530 + MPMX19_06477 0.72 -1.2 261,530 + MPMX19_06477 0.72 -0.9 261,530 + MPMX19_06477 0.72 +0.2 261,531 - MPMX19_06477 0.72 +0.5 261,531 - MPMX19_06477 0.72 -1.5 261,653 - MPMX19_06477 0.85 +0.0 261,653 - MPMX19_06477 0.85 +1.1
Or see this region's nucleotide sequence