Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06473 and MPMX19_06474 are separated by 26 nucleotides MPMX19_06474 and MPMX19_06475 are separated by 6 nucleotides MPMX19_06475 and MPMX19_06476 are separated by 128 nucleotides
MPMX19_06473: MPMX19_06473 - Putative aliphatic sulfonates-binding protein, at 257,007 to 258,020
_06473
MPMX19_06474: MPMX19_06474 - Vitamin B12 import ATP-binding protein BtuD, at 258,047 to 258,910
_06474
MPMX19_06475: MPMX19_06475 - Putative aliphatic sulfonates transport permease protein SsuC, at 258,917 to 259,744
_06475
MPMX19_06476: MPMX19_06476 - HTH-type transcriptional regulator ArgP, at 259,873 to 260,790
_06476
Position (kb) 258
259
260 Strain fitness (log2 ratio) -2
-1
0
1
2 at 258.009 kb on - strand at 258.088 kb on - strand at 258.648 kb on - strand, within MPMX19_06474 at 259.137 kb on + strand, within MPMX19_06475 at 259.278 kb on + strand, within MPMX19_06475 at 259.278 kb on + strand, within MPMX19_06475 at 259.278 kb on + strand, within MPMX19_06475 at 259.278 kb on + strand, within MPMX19_06475 at 259.279 kb on - strand, within MPMX19_06475 at 259.307 kb on + strand, within MPMX19_06475 at 259.307 kb on + strand, within MPMX19_06475 at 259.307 kb on + strand, within MPMX19_06475 at 259.308 kb on - strand, within MPMX19_06475 at 259.308 kb on - strand, within MPMX19_06475 at 259.308 kb on - strand, within MPMX19_06475 at 259.308 kb on - strand, within MPMX19_06475 at 259.308 kb on - strand, within MPMX19_06475 at 259.651 kb on + strand, within MPMX19_06475 at 259.651 kb on + strand, within MPMX19_06475 at 259.651 kb on + strand, within MPMX19_06475 at 259.651 kb on + strand, within MPMX19_06475 at 259.652 kb on - strand, within MPMX19_06475 at 259.778 kb on - strand at 260.014 kb on + strand, within MPMX19_06476 at 260.015 kb on - strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.275 kb on + strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.276 kb on - strand, within MPMX19_06476 at 260.571 kb on - strand, within MPMX19_06476 at 260.571 kb on - strand, within MPMX19_06476 at 260.571 kb on - strand, within MPMX19_06476 at 260.571 kb on - strand, within MPMX19_06476
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 258,009 - -1.1 258,088 - -1.0 258,648 - MPMX19_06474 0.70 -1.8 259,137 + MPMX19_06475 0.27 +1.6 259,278 + MPMX19_06475 0.44 +0.1 259,278 + MPMX19_06475 0.44 -0.2 259,278 + MPMX19_06475 0.44 -0.9 259,278 + MPMX19_06475 0.44 -0.8 259,279 - MPMX19_06475 0.44 +0.5 259,307 + MPMX19_06475 0.47 +0.6 259,307 + MPMX19_06475 0.47 +0.3 259,307 + MPMX19_06475 0.47 -1.6 259,308 - MPMX19_06475 0.47 -0.7 259,308 - MPMX19_06475 0.47 +0.9 259,308 - MPMX19_06475 0.47 -0.8 259,308 - MPMX19_06475 0.47 -2.7 259,308 - MPMX19_06475 0.47 +2.2 259,651 + MPMX19_06475 0.89 -0.4 259,651 + MPMX19_06475 0.89 -0.3 259,651 + MPMX19_06475 0.89 +0.6 259,651 + MPMX19_06475 0.89 -1.3 259,652 - MPMX19_06475 0.89 +0.4 259,778 - +0.2 260,014 + MPMX19_06476 0.15 -1.3 260,015 - MPMX19_06476 0.15 -1.6 260,275 + MPMX19_06476 0.44 -1.0 260,275 + MPMX19_06476 0.44 -0.0 260,275 + MPMX19_06476 0.44 +2.4 260,275 + MPMX19_06476 0.44 +0.2 260,275 + MPMX19_06476 0.44 +1.1 260,275 + MPMX19_06476 0.44 +1.3 260,275 + MPMX19_06476 0.44 -0.3 260,275 + MPMX19_06476 0.44 -1.8 260,275 + MPMX19_06476 0.44 +0.3 260,276 - MPMX19_06476 0.44 +0.6 260,276 - MPMX19_06476 0.44 +0.1 260,276 - MPMX19_06476 0.44 +0.4 260,276 - MPMX19_06476 0.44 +0.2 260,276 - MPMX19_06476 0.44 +0.6 260,276 - MPMX19_06476 0.44 +0.1 260,276 - MPMX19_06476 0.44 -0.5 260,276 - MPMX19_06476 0.44 +0.4 260,276 - MPMX19_06476 0.44 -0.5 260,276 - MPMX19_06476 0.44 +1.1 260,276 - MPMX19_06476 0.44 -0.6 260,276 - MPMX19_06476 0.44 +0.8 260,276 - MPMX19_06476 0.44 -1.9 260,571 - MPMX19_06476 0.76 +0.5 260,571 - MPMX19_06476 0.76 +0.1 260,571 - MPMX19_06476 0.76 -0.3 260,571 - MPMX19_06476 0.76 -2.3
Or see this region's nucleotide sequence