Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_06283 and MPMX19_06284 are separated by 220 nucleotides MPMX19_06284 and MPMX19_06285 are separated by 291 nucleotides
MPMX19_06283: MPMX19_06283 - ISL3 family transposase ISAzba9, at 33,489 to 35,147
_06283
MPMX19_06284: MPMX19_06284 - hypothetical protein, at 35,368 to 36,030
_06284
MPMX19_06285: MPMX19_06285 - Cyclic beta-(1,2)-glucan synthase NdvB, at 36,322 to 44,931
_06285
Position (kb) 35
36
37 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.492 kb on + strand, within MPMX19_06283 at 34.492 kb on + strand, within MPMX19_06283 at 34.492 kb on + strand, within MPMX19_06283 at 34.493 kb on - strand, within MPMX19_06283 at 34.493 kb on - strand, within MPMX19_06283 at 34.975 kb on + strand, within MPMX19_06283 at 35.049 kb on + strand at 35.049 kb on + strand at 35.049 kb on + strand at 35.050 kb on - strand at 35.050 kb on - strand at 35.050 kb on - strand at 35.062 kb on + strand at 35.063 kb on - strand at 35.069 kb on + strand at 35.070 kb on - strand at 35.070 kb on - strand at 35.275 kb on - strand at 35.344 kb on + strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.345 kb on - strand at 35.415 kb on + strand at 35.415 kb on + strand at 35.415 kb on + strand at 35.415 kb on + strand at 35.416 kb on - strand at 35.416 kb on - strand at 35.416 kb on - strand at 35.416 kb on - strand at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.442 kb on + strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.443 kb on - strand, within MPMX19_06284 at 35.491 kb on - strand, within MPMX19_06284 at 35.631 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.757 kb on + strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.758 kb on - strand, within MPMX19_06284 at 35.802 kb on + strand, within MPMX19_06284 at 35.802 kb on + strand, within MPMX19_06284 at 35.829 kb on - strand, within MPMX19_06284 at 35.829 kb on - strand, within MPMX19_06284 at 35.829 kb on - strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.892 kb on + strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.893 kb on - strand, within MPMX19_06284 at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 35.984 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.132 kb on + strand at 36.133 kb on - strand at 36.173 kb on + strand at 36.173 kb on + strand at 36.173 kb on + strand at 36.173 kb on + strand at 36.173 kb on + strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.174 kb on - strand at 36.231 kb on + strand at 36.231 kb on + strand at 36.263 kb on + strand at 36.263 kb on + strand at 36.263 kb on + strand at 36.263 kb on + strand at 36.263 kb on + strand at 36.263 kb on + strand at 36.264 kb on - strand at 36.264 kb on - strand at 36.303 kb on + strand at 36.304 kb on - strand at 36.304 kb on - strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.628 kb on + strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.629 kb on - strand at 36.682 kb on + strand at 36.683 kb on - strand at 36.683 kb on - strand at 36.683 kb on - strand at 36.685 kb on + strand at 36.685 kb on + strand at 36.686 kb on - strand at 36.686 kb on - strand at 36.686 kb on - strand at 36.817 kb on + strand at 36.817 kb on + strand at 36.818 kb on - strand at 36.818 kb on - strand at 36.818 kb on - strand at 36.867 kb on + strand at 36.867 kb on + strand at 36.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 34,492 + MPMX19_06283 0.60 +0.9 34,492 + MPMX19_06283 0.60 -0.7 34,492 + MPMX19_06283 0.60 +0.2 34,493 - MPMX19_06283 0.61 -0.9 34,493 - MPMX19_06283 0.61 +0.0 34,975 + MPMX19_06283 0.90 +0.1 35,049 + -0.8 35,049 + -0.7 35,049 + +0.4 35,050 - -0.6 35,050 - -1.3 35,050 - -0.1 35,062 + +0.2 35,063 - -0.8 35,069 + -0.6 35,070 - +0.4 35,070 - -0.2 35,275 - +0.4 35,344 + +0.5 35,345 - +0.2 35,345 - -0.9 35,345 - -0.0 35,345 - -1.3 35,345 - -0.2 35,415 + -1.8 35,415 + -2.0 35,415 + -0.3 35,415 + -1.2 35,416 - -1.0 35,416 - -0.5 35,416 - -0.3 35,416 - +0.2 35,442 + MPMX19_06284 0.11 -0.3 35,442 + MPMX19_06284 0.11 -0.3 35,442 + MPMX19_06284 0.11 -1.2 35,442 + MPMX19_06284 0.11 -0.2 35,442 + MPMX19_06284 0.11 -0.7 35,442 + MPMX19_06284 0.11 -1.2 35,442 + MPMX19_06284 0.11 +0.1 35,442 + MPMX19_06284 0.11 -2.6 35,442 + MPMX19_06284 0.11 -2.1 35,442 + MPMX19_06284 0.11 -1.1 35,442 + MPMX19_06284 0.11 +0.3 35,442 + MPMX19_06284 0.11 -0.4 35,442 + MPMX19_06284 0.11 -1.2 35,442 + MPMX19_06284 0.11 +0.5 35,443 - MPMX19_06284 0.11 -2.1 35,443 - MPMX19_06284 0.11 -1.3 35,443 - MPMX19_06284 0.11 -0.3 35,443 - MPMX19_06284 0.11 +0.2 35,443 - MPMX19_06284 0.11 -0.6 35,443 - MPMX19_06284 0.11 -1.1 35,443 - MPMX19_06284 0.11 -0.7 35,443 - MPMX19_06284 0.11 -0.7 35,443 - MPMX19_06284 0.11 -1.9 35,443 - MPMX19_06284 0.11 -1.2 35,443 - MPMX19_06284 0.11 -1.3 35,491 - MPMX19_06284 0.19 +1.0 35,631 + MPMX19_06284 0.40 -0.9 35,757 + MPMX19_06284 0.59 +0.2 35,757 + MPMX19_06284 0.59 -0.8 35,757 + MPMX19_06284 0.59 -0.2 35,757 + MPMX19_06284 0.59 -2.9 35,757 + MPMX19_06284 0.59 +0.1 35,757 + MPMX19_06284 0.59 -0.5 35,757 + MPMX19_06284 0.59 -1.8 35,758 - MPMX19_06284 0.59 -0.1 35,758 - MPMX19_06284 0.59 +1.8 35,758 - MPMX19_06284 0.59 -0.9 35,758 - MPMX19_06284 0.59 -1.0 35,758 - MPMX19_06284 0.59 -0.3 35,758 - MPMX19_06284 0.59 -1.5 35,758 - MPMX19_06284 0.59 -0.5 35,758 - MPMX19_06284 0.59 +0.4 35,758 - MPMX19_06284 0.59 -1.0 35,758 - MPMX19_06284 0.59 +0.2 35,802 + MPMX19_06284 0.65 +0.2 35,802 + MPMX19_06284 0.65 +0.2 35,829 - MPMX19_06284 0.70 -0.2 35,829 - MPMX19_06284 0.70 -1.2 35,829 - MPMX19_06284 0.70 +1.0 35,892 + MPMX19_06284 0.79 -0.1 35,892 + MPMX19_06284 0.79 -0.5 35,892 + MPMX19_06284 0.79 -0.5 35,892 + MPMX19_06284 0.79 +0.5 35,892 + MPMX19_06284 0.79 +0.2 35,892 + MPMX19_06284 0.79 -1.3 35,892 + MPMX19_06284 0.79 +0.2 35,892 + MPMX19_06284 0.79 +1.5 35,892 + MPMX19_06284 0.79 +0.9 35,892 + MPMX19_06284 0.79 -0.8 35,892 + MPMX19_06284 0.79 -0.3 35,892 + MPMX19_06284 0.79 +1.2 35,892 + MPMX19_06284 0.79 -1.5 35,892 + MPMX19_06284 0.79 -1.8 35,892 + MPMX19_06284 0.79 -0.9 35,892 + MPMX19_06284 0.79 -1.5 35,892 + MPMX19_06284 0.79 +0.2 35,893 - MPMX19_06284 0.79 -0.6 35,893 - MPMX19_06284 0.79 -1.3 35,893 - MPMX19_06284 0.79 +0.8 35,893 - MPMX19_06284 0.79 -0.5 35,893 - MPMX19_06284 0.79 -0.4 35,893 - MPMX19_06284 0.79 -0.2 35,893 - MPMX19_06284 0.79 -1.2 35,893 - MPMX19_06284 0.79 +0.5 35,893 - MPMX19_06284 0.79 -3.0 35,893 - MPMX19_06284 0.79 +0.8 35,984 + -0.5 35,984 + +0.5 35,984 + +0.1 35,984 + -0.3 35,984 + +0.2 36,132 + -1.0 36,132 + -0.9 36,132 + -0.3 36,132 + -0.2 36,132 + +0.2 36,133 - -0.3 36,173 + -0.9 36,173 + +0.6 36,173 + -0.8 36,173 + +0.6 36,173 + -0.2 36,174 - -0.5 36,174 - -0.9 36,174 - +0.2 36,174 - +0.0 36,174 - +0.3 36,174 - +0.9 36,174 - +0.1 36,231 + +1.1 36,231 + -1.8 36,263 + -2.4 36,263 + +0.1 36,263 + +1.0 36,263 + -0.1 36,263 + -2.0 36,263 + +0.4 36,264 - -2.6 36,264 - +0.4 36,303 + -0.8 36,304 - +0.2 36,304 - -0.8 36,628 + -0.2 36,628 + +0.5 36,628 + +0.4 36,628 + +0.0 36,628 + +1.3 36,628 + -2.1 36,628 + -0.8 36,628 + -0.7 36,628 + +0.9 36,628 + -1.0 36,628 + -0.5 36,628 + +2.1 36,629 - +0.8 36,629 - +0.0 36,629 - -0.8 36,629 - -0.9 36,629 - +1.6 36,629 - +0.4 36,629 - -0.8 36,629 - -0.1 36,629 - +0.2 36,629 - -0.9 36,629 - -0.4 36,629 - +0.0 36,629 - +0.2 36,629 - -1.0 36,629 - -1.1 36,682 + -2.6 36,683 - +0.2 36,683 - -0.3 36,683 - -0.2 36,685 + +0.2 36,685 + +1.2 36,686 - +0.0 36,686 - -0.6 36,686 - -0.5 36,817 + -1.2 36,817 + +0.7 36,818 - -0.7 36,818 - -0.1 36,818 - -1.0 36,867 + -0.8 36,867 + +0.2 36,867 + +1.0
Or see this region's nucleotide sequence