Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05998 and MPMX19_05999 are separated by 171 nucleotides MPMX19_05999 and MPMX19_06000 are separated by 7 nucleotides MPMX19_06000 and MPMX19_06001 are separated by 265 nucleotides
MPMX19_05998: MPMX19_05998 - Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase, at 151,862 to 153,568
_05998
MPMX19_05999: MPMX19_05999 - hypothetical protein, at 153,740 to 154,138
_05999
MPMX19_06000: MPMX19_06000 - Fructokinase, at 154,146 to 155,135
_06000
MPMX19_06001: MPMX19_06001 - hypothetical protein, at 155,401 to 156,162
_06001
Position (kb) 154
155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 153.204 kb on - strand, within MPMX19_05998 at 153.204 kb on - strand, within MPMX19_05998 at 153.204 kb on - strand, within MPMX19_05998 at 153.204 kb on - strand, within MPMX19_05998 at 153.215 kb on + strand, within MPMX19_05998 at 153.215 kb on + strand, within MPMX19_05998 at 153.215 kb on + strand, within MPMX19_05998 at 153.215 kb on + strand, within MPMX19_05998 at 153.215 kb on + strand, within MPMX19_05998 at 153.215 kb on + strand, within MPMX19_05998 at 153.216 kb on - strand, within MPMX19_05998 at 153.216 kb on - strand, within MPMX19_05998 at 153.216 kb on - strand, within MPMX19_05998 at 153.515 kb on + strand at 153.515 kb on + strand at 153.515 kb on + strand at 153.515 kb on + strand at 153.515 kb on + strand at 153.515 kb on + strand at 153.516 kb on - strand at 153.516 kb on - strand at 153.548 kb on + strand at 153.548 kb on + strand at 153.587 kb on + strand at 153.587 kb on + strand at 153.588 kb on - strand at 153.602 kb on - strand at 153.606 kb on + strand at 153.606 kb on + strand at 153.606 kb on + strand at 153.606 kb on + strand at 153.606 kb on + strand at 153.606 kb on + strand at 153.606 kb on + strand at 153.606 kb on + strand at 153.606 kb on + strand at 153.606 kb on + strand at 153.607 kb on - strand at 153.607 kb on - strand at 153.607 kb on - strand at 153.607 kb on - strand at 153.607 kb on - strand at 153.607 kb on - strand at 153.607 kb on - strand at 153.607 kb on - strand at 153.607 kb on - strand at 153.607 kb on - strand at 153.607 kb on - strand at 153.845 kb on + strand, within MPMX19_05999 at 153.845 kb on + strand, within MPMX19_05999 at 153.845 kb on + strand, within MPMX19_05999 at 153.845 kb on + strand, within MPMX19_05999 at 153.845 kb on + strand, within MPMX19_05999 at 153.846 kb on - strand, within MPMX19_05999 at 153.846 kb on - strand, within MPMX19_05999 at 153.846 kb on - strand, within MPMX19_05999 at 153.846 kb on - strand, within MPMX19_05999 at 153.846 kb on - strand, within MPMX19_05999 at 153.846 kb on - strand, within MPMX19_05999 at 153.846 kb on - strand, within MPMX19_05999 at 153.846 kb on - strand, within MPMX19_05999 at 153.860 kb on + strand, within MPMX19_05999 at 153.860 kb on + strand, within MPMX19_05999 at 153.860 kb on + strand, within MPMX19_05999 at 153.860 kb on + strand, within MPMX19_05999 at 153.861 kb on - strand, within MPMX19_05999 at 153.861 kb on - strand, within MPMX19_05999 at 153.861 kb on - strand, within MPMX19_05999 at 154.019 kb on + strand, within MPMX19_05999 at 154.019 kb on + strand, within MPMX19_05999 at 154.019 kb on + strand, within MPMX19_05999 at 154.019 kb on + strand, within MPMX19_05999 at 154.019 kb on + strand, within MPMX19_05999 at 154.019 kb on + strand, within MPMX19_05999 at 154.020 kb on - strand, within MPMX19_05999 at 154.020 kb on - strand, within MPMX19_05999 at 154.020 kb on - strand, within MPMX19_05999 at 154.020 kb on - strand, within MPMX19_05999 at 154.020 kb on - strand, within MPMX19_05999 at 154.020 kb on - strand, within MPMX19_05999 at 154.020 kb on - strand, within MPMX19_05999 at 154.020 kb on - strand, within MPMX19_05999 at 154.020 kb on - strand, within MPMX19_05999 at 154.078 kb on + strand, within MPMX19_05999 at 154.078 kb on + strand, within MPMX19_05999 at 154.078 kb on + strand, within MPMX19_05999 at 154.079 kb on - strand, within MPMX19_05999 at 154.079 kb on - strand, within MPMX19_05999 at 154.079 kb on - strand, within MPMX19_05999 at 154.079 kb on - strand, within MPMX19_05999 at 154.079 kb on - strand, within MPMX19_05999 at 154.288 kb on + strand, within MPMX19_06000 at 154.288 kb on + strand, within MPMX19_06000 at 154.288 kb on + strand, within MPMX19_06000 at 154.288 kb on + strand, within MPMX19_06000 at 154.288 kb on + strand, within MPMX19_06000 at 154.288 kb on + strand, within MPMX19_06000 at 154.289 kb on - strand, within MPMX19_06000 at 154.289 kb on - strand, within MPMX19_06000 at 154.549 kb on + strand, within MPMX19_06000 at 154.549 kb on + strand, within MPMX19_06000 at 154.549 kb on + strand, within MPMX19_06000 at 154.549 kb on + strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.550 kb on - strand, within MPMX19_06000 at 154.969 kb on + strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 154.970 kb on - strand, within MPMX19_06000 at 155.087 kb on - strand at 155.173 kb on - strand at 155.173 kb on - strand at 155.379 kb on + strand at 155.379 kb on + strand at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.581 kb on + strand, within MPMX19_06001 at 155.582 kb on - strand, within MPMX19_06001 at 155.582 kb on - strand, within MPMX19_06001 at 155.582 kb on - strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.758 kb on + strand, within MPMX19_06001 at 155.759 kb on - strand, within MPMX19_06001 at 155.759 kb on - strand, within MPMX19_06001 at 155.866 kb on + strand, within MPMX19_06001 at 155.867 kb on - strand, within MPMX19_06001 at 155.867 kb on - strand, within MPMX19_06001
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 153,204 - MPMX19_05998 0.79 +0.5 153,204 - MPMX19_05998 0.79 -2.4 153,204 - MPMX19_05998 0.79 -0.1 153,204 - MPMX19_05998 0.79 -2.1 153,215 + MPMX19_05998 0.79 -1.4 153,215 + MPMX19_05998 0.79 -0.3 153,215 + MPMX19_05998 0.79 -1.4 153,215 + MPMX19_05998 0.79 +0.8 153,215 + MPMX19_05998 0.79 -0.3 153,215 + MPMX19_05998 0.79 -1.9 153,216 - MPMX19_05998 0.79 -1.1 153,216 - MPMX19_05998 0.79 -1.0 153,216 - MPMX19_05998 0.79 -0.3 153,515 + +1.5 153,515 + -1.5 153,515 + +0.7 153,515 + -1.6 153,515 + -0.1 153,515 + +0.3 153,516 - -1.2 153,516 - -0.3 153,548 + -0.3 153,548 + +1.0 153,587 + -0.8 153,587 + +0.5 153,588 - +0.6 153,602 - +0.0 153,606 + +1.3 153,606 + +1.0 153,606 + +0.5 153,606 + -1.9 153,606 + -0.5 153,606 + -1.1 153,606 + +1.0 153,606 + +0.2 153,606 + +0.0 153,606 + -0.2 153,607 - -0.2 153,607 - -1.8 153,607 - +1.3 153,607 - +0.1 153,607 - -0.3 153,607 - -1.3 153,607 - -1.7 153,607 - -0.7 153,607 - -0.8 153,607 - -0.3 153,607 - -1.1 153,845 + MPMX19_05999 0.26 -0.1 153,845 + MPMX19_05999 0.26 -0.2 153,845 + MPMX19_05999 0.26 +0.4 153,845 + MPMX19_05999 0.26 -0.4 153,845 + MPMX19_05999 0.26 +0.2 153,846 - MPMX19_05999 0.27 -1.7 153,846 - MPMX19_05999 0.27 -0.1 153,846 - MPMX19_05999 0.27 +0.3 153,846 - MPMX19_05999 0.27 -1.7 153,846 - MPMX19_05999 0.27 -0.8 153,846 - MPMX19_05999 0.27 -0.8 153,846 - MPMX19_05999 0.27 -1.9 153,846 - MPMX19_05999 0.27 -0.3 153,860 + MPMX19_05999 0.30 -0.8 153,860 + MPMX19_05999 0.30 -0.6 153,860 + MPMX19_05999 0.30 +0.3 153,860 + MPMX19_05999 0.30 -0.1 153,861 - MPMX19_05999 0.30 -0.8 153,861 - MPMX19_05999 0.30 -1.7 153,861 - MPMX19_05999 0.30 -0.2 154,019 + MPMX19_05999 0.70 -2.2 154,019 + MPMX19_05999 0.70 -1.1 154,019 + MPMX19_05999 0.70 -0.7 154,019 + MPMX19_05999 0.70 -0.4 154,019 + MPMX19_05999 0.70 -0.2 154,019 + MPMX19_05999 0.70 -0.0 154,020 - MPMX19_05999 0.70 +1.0 154,020 - MPMX19_05999 0.70 -0.2 154,020 - MPMX19_05999 0.70 -1.9 154,020 - MPMX19_05999 0.70 -1.6 154,020 - MPMX19_05999 0.70 -0.3 154,020 - MPMX19_05999 0.70 -1.2 154,020 - MPMX19_05999 0.70 -0.6 154,020 - MPMX19_05999 0.70 -0.1 154,020 - MPMX19_05999 0.70 -1.3 154,078 + MPMX19_05999 0.85 -1.4 154,078 + MPMX19_05999 0.85 -0.6 154,078 + MPMX19_05999 0.85 +1.3 154,079 - MPMX19_05999 0.85 -0.8 154,079 - MPMX19_05999 0.85 +1.0 154,079 - MPMX19_05999 0.85 -2.4 154,079 - MPMX19_05999 0.85 -1.1 154,079 - MPMX19_05999 0.85 -0.4 154,288 + MPMX19_06000 0.14 -0.5 154,288 + MPMX19_06000 0.14 -0.8 154,288 + MPMX19_06000 0.14 +0.0 154,288 + MPMX19_06000 0.14 -1.9 154,288 + MPMX19_06000 0.14 -1.1 154,288 + MPMX19_06000 0.14 -0.4 154,289 - MPMX19_06000 0.14 +0.3 154,289 - MPMX19_06000 0.14 -1.0 154,549 + MPMX19_06000 0.41 -1.6 154,549 + MPMX19_06000 0.41 -0.3 154,549 + MPMX19_06000 0.41 +0.5 154,549 + MPMX19_06000 0.41 -0.4 154,550 - MPMX19_06000 0.41 -0.1 154,550 - MPMX19_06000 0.41 -0.2 154,550 - MPMX19_06000 0.41 -1.3 154,550 - MPMX19_06000 0.41 -1.3 154,550 - MPMX19_06000 0.41 -2.8 154,550 - MPMX19_06000 0.41 -0.4 154,550 - MPMX19_06000 0.41 +1.2 154,550 - MPMX19_06000 0.41 -1.4 154,550 - MPMX19_06000 0.41 -0.8 154,969 + MPMX19_06000 0.83 -0.9 154,970 - MPMX19_06000 0.83 -0.6 154,970 - MPMX19_06000 0.83 -0.7 154,970 - MPMX19_06000 0.83 -1.8 154,970 - MPMX19_06000 0.83 +0.0 154,970 - MPMX19_06000 0.83 -0.7 154,970 - MPMX19_06000 0.83 -1.1 154,970 - MPMX19_06000 0.83 -1.0 154,970 - MPMX19_06000 0.83 -2.3 155,087 - -0.8 155,173 - -0.1 155,173 - -1.2 155,379 + +0.4 155,379 + -1.3 155,581 + MPMX19_06001 0.24 -1.3 155,581 + MPMX19_06001 0.24 -0.7 155,581 + MPMX19_06001 0.24 -0.8 155,581 + MPMX19_06001 0.24 -1.3 155,581 + MPMX19_06001 0.24 +1.4 155,582 - MPMX19_06001 0.24 -1.4 155,582 - MPMX19_06001 0.24 +0.0 155,582 - MPMX19_06001 0.24 +0.3 155,758 + MPMX19_06001 0.47 -0.5 155,758 + MPMX19_06001 0.47 -0.9 155,758 + MPMX19_06001 0.47 +0.0 155,758 + MPMX19_06001 0.47 -0.2 155,759 - MPMX19_06001 0.47 +0.4 155,759 - MPMX19_06001 0.47 -1.3 155,866 + MPMX19_06001 0.61 -1.1 155,867 - MPMX19_06001 0.61 -0.3 155,867 - MPMX19_06001 0.61 +0.2
Or see this region's nucleotide sequence