Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05924

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05923 and MPMX19_05924 are separated by 11 nucleotidesMPMX19_05924 and MPMX19_05925 are separated by 45 nucleotides MPMX19_05923: MPMX19_05923 - Vitamin B12 import ATP-binding protein BtuD, at 57,237 to 58,901 _05923 MPMX19_05924: MPMX19_05924 - hypothetical protein, at 58,913 to 59,992 _05924 MPMX19_05925: MPMX19_05925 - Nitrate/nitrite binding protein NrtA, at 60,038 to 61,453 _05925 Position (kb) 58 59 60Strain fitness (log2 ratio) -2 -1 0 1 2at 58.024 kb on + strand, within MPMX19_05923at 58.025 kb on - strand, within MPMX19_05923at 58.025 kb on - strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.063 kb on + strand, within MPMX19_05923at 58.064 kb on - strand, within MPMX19_05923at 58.064 kb on - strand, within MPMX19_05923at 58.064 kb on - strand, within MPMX19_05923at 58.064 kb on - strand, within MPMX19_05923at 58.162 kb on + strand, within MPMX19_05923at 58.162 kb on + strand, within MPMX19_05923at 58.660 kb on + strand, within MPMX19_05923at 58.660 kb on + strand, within MPMX19_05923at 58.660 kb on + strand, within MPMX19_05923at 58.717 kb on + strand, within MPMX19_05923at 58.865 kb on - strandat 58.914 kb on + strandat 58.915 kb on - strandat 59.223 kb on + strand, within MPMX19_05924at 59.550 kb on + strand, within MPMX19_05924at 59.550 kb on + strand, within MPMX19_05924at 59.550 kb on + strand, within MPMX19_05924at 59.551 kb on - strand, within MPMX19_05924at 59.551 kb on - strand, within MPMX19_05924at 59.551 kb on - strand, within MPMX19_05924at 59.551 kb on - strand, within MPMX19_05924at 59.551 kb on - strand, within MPMX19_05924at 59.551 kb on - strand, within MPMX19_05924at 59.551 kb on - strand, within MPMX19_05924at 59.568 kb on + strand, within MPMX19_05924at 59.568 kb on + strand, within MPMX19_05924at 59.568 kb on + strand, within MPMX19_05924at 59.569 kb on - strand, within MPMX19_05924at 59.569 kb on - strand, within MPMX19_05924at 59.640 kb on + strand, within MPMX19_05924at 59.640 kb on + strand, within MPMX19_05924at 59.640 kb on + strand, within MPMX19_05924at 59.641 kb on - strand, within MPMX19_05924at 59.641 kb on - strand, within MPMX19_05924at 59.641 kb on - strand, within MPMX19_05924at 59.641 kb on - strand, within MPMX19_05924at 59.641 kb on - strand, within MPMX19_05924at 59.682 kb on + strand, within MPMX19_05924at 59.682 kb on + strand, within MPMX19_05924at 59.682 kb on + strand, within MPMX19_05924at 59.682 kb on + strand, within MPMX19_05924at 59.682 kb on + strand, within MPMX19_05924at 59.682 kb on + strand, within MPMX19_05924at 59.682 kb on + strand, within MPMX19_05924at 59.683 kb on - strand, within MPMX19_05924at 59.683 kb on - strand, within MPMX19_05924at 59.683 kb on - strand, within MPMX19_05924at 59.683 kb on - strand, within MPMX19_05924at 59.683 kb on - strand, within MPMX19_05924at 60.109 kb on - strandat 60.132 kb on + strandat 60.132 kb on + strandat 60.133 kb on - strandat 60.171 kb on + strandat 60.171 kb on + strandat 60.171 kb on + strandat 60.171 kb on + strandat 60.171 kb on + strandat 60.171 kb on + strandat 60.172 kb on - strandat 60.172 kb on - strandat 60.172 kb on - strandat 60.172 kb on - strandat 60.172 kb on - strandat 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.246 kb on + strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.247 kb on - strand, within MPMX19_05925at 60.261 kb on + strand, within MPMX19_05925at 60.261 kb on + strand, within MPMX19_05925at 60.261 kb on + strand, within MPMX19_05925at 60.261 kb on + strand, within MPMX19_05925at 60.261 kb on + strand, within MPMX19_05925at 60.261 kb on + strand, within MPMX19_05925at 60.262 kb on - strand, within MPMX19_05925at 60.262 kb on - strand, within MPMX19_05925at 60.262 kb on - strand, within MPMX19_05925at 60.262 kb on - strand, within MPMX19_05925at 60.262 kb on - strand, within MPMX19_05925at 60.285 kb on + strand, within MPMX19_05925at 60.285 kb on + strand, within MPMX19_05925at 60.285 kb on + strand, within MPMX19_05925at 60.286 kb on - strand, within MPMX19_05925at 60.342 kb on + strand, within MPMX19_05925at 60.343 kb on - strand, within MPMX19_05925at 60.343 kb on - strand, within MPMX19_05925at 60.343 kb on - strand, within MPMX19_05925at 60.360 kb on + strand, within MPMX19_05925at 60.360 kb on + strand, within MPMX19_05925at 60.361 kb on - strand, within MPMX19_05925at 60.361 kb on - strand, within MPMX19_05925at 60.361 kb on - strand, within MPMX19_05925at 60.361 kb on - strand, within MPMX19_05925at 60.369 kb on + strand, within MPMX19_05925at 60.370 kb on - strand, within MPMX19_05925at 60.370 kb on - strand, within MPMX19_05925at 60.370 kb on - strand, within MPMX19_05925at 60.381 kb on + strand, within MPMX19_05925at 60.381 kb on + strand, within MPMX19_05925at 60.381 kb on + strand, within MPMX19_05925at 60.382 kb on - strand, within MPMX19_05925at 60.486 kb on + strand, within MPMX19_05925at 60.486 kb on + strand, within MPMX19_05925at 60.486 kb on + strand, within MPMX19_05925at 60.486 kb on + strand, within MPMX19_05925at 60.487 kb on - strand, within MPMX19_05925at 60.487 kb on - strand, within MPMX19_05925at 60.487 kb on - strand, within MPMX19_05925at 60.487 kb on - strand, within MPMX19_05925at 60.487 kb on - strand, within MPMX19_05925at 60.487 kb on - strand, within MPMX19_05925at 60.487 kb on - strand, within MPMX19_05925at 60.732 kb on + strand, within MPMX19_05925at 60.733 kb on - strand, within MPMX19_05925at 60.738 kb on + strand, within MPMX19_05925at 60.738 kb on + strand, within MPMX19_05925at 60.738 kb on + strand, within MPMX19_05925at 60.738 kb on + strand, within MPMX19_05925at 60.738 kb on + strand, within MPMX19_05925at 60.738 kb on + strand, within MPMX19_05925at 60.738 kb on + strand, within MPMX19_05925at 60.738 kb on + strand, within MPMX19_05925at 60.738 kb on + strand, within MPMX19_05925at 60.739 kb on - strand, within MPMX19_05925at 60.739 kb on - strand, within MPMX19_05925at 60.739 kb on - strand, within MPMX19_05925at 60.739 kb on - strand, within MPMX19_05925at 60.739 kb on - strand, within MPMX19_05925at 60.739 kb on - strand, within MPMX19_05925at 60.739 kb on - strand, within MPMX19_05925at 60.739 kb on - strand, within MPMX19_05925at 60.739 kb on - strand, within MPMX19_05925at 60.837 kb on + strand, within MPMX19_05925at 60.837 kb on + strand, within MPMX19_05925at 60.837 kb on + strand, within MPMX19_05925at 60.837 kb on + strand, within MPMX19_05925at 60.837 kb on + strand, within MPMX19_05925at 60.838 kb on - strand, within MPMX19_05925at 60.838 kb on - strand, within MPMX19_05925at 60.873 kb on + strand, within MPMX19_05925at 60.874 kb on - strand, within MPMX19_05925at 60.874 kb on - strand, within MPMX19_05925at 60.874 kb on - strand, within MPMX19_05925at 60.885 kb on + strand, within MPMX19_05925at 60.885 kb on + strand, within MPMX19_05925at 60.885 kb on + strand, within MPMX19_05925at 60.885 kb on + strand, within MPMX19_05925at 60.885 kb on + strand, within MPMX19_05925at 60.885 kb on + strand, within MPMX19_05925at 60.885 kb on + strand, within MPMX19_05925at 60.885 kb on + strand, within MPMX19_05925at 60.885 kb on + strand, within MPMX19_05925at 60.886 kb on - strand, within MPMX19_05925at 60.886 kb on - strand, within MPMX19_05925at 60.886 kb on - strand, within MPMX19_05925at 60.886 kb on - strand, within MPMX19_05925at 60.886 kb on - strand, within MPMX19_05925at 60.886 kb on - strand, within MPMX19_05925at 60.886 kb on - strand, within MPMX19_05925at 60.886 kb on - strand, within MPMX19_05925at 60.945 kb on + strand, within MPMX19_05925at 60.945 kb on + strand, within MPMX19_05925at 60.945 kb on + strand, within MPMX19_05925at 60.945 kb on + strand, within MPMX19_05925at 60.945 kb on + strand, within MPMX19_05925at 60.945 kb on + strand, within MPMX19_05925at 60.945 kb on + strand, within MPMX19_05925at 60.945 kb on + strand, within MPMX19_05925at 60.945 kb on + strand, within MPMX19_05925at 60.946 kb on - strand, within MPMX19_05925at 60.946 kb on - strand, within MPMX19_05925at 60.946 kb on - strand, within MPMX19_05925at 60.946 kb on - strand, within MPMX19_05925at 60.946 kb on - strand, within MPMX19_05925at 60.946 kb on - strand, within MPMX19_05925

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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58,024 + MPMX19_05923 0.47 -0.1
58,025 - MPMX19_05923 0.47 -0.1
58,025 - MPMX19_05923 0.47 +2.7
58,063 + MPMX19_05923 0.50 +0.4
58,063 + MPMX19_05923 0.50 +0.5
58,063 + MPMX19_05923 0.50 -1.8
58,063 + MPMX19_05923 0.50 +0.5
58,063 + MPMX19_05923 0.50 -1.3
58,063 + MPMX19_05923 0.50 -0.4
58,064 - MPMX19_05923 0.50 +0.6
58,064 - MPMX19_05923 0.50 -0.6
58,064 - MPMX19_05923 0.50 -1.1
58,064 - MPMX19_05923 0.50 +0.9
58,162 + MPMX19_05923 0.56 -0.3
58,162 + MPMX19_05923 0.56 +1.4
58,660 + MPMX19_05923 0.85 -0.8
58,660 + MPMX19_05923 0.85 +0.4
58,660 + MPMX19_05923 0.85 -0.6
58,717 + MPMX19_05923 0.89 -0.6
58,865 - +1.6
58,914 + +0.1
58,915 - -0.3
59,223 + MPMX19_05924 0.29 +0.2
59,550 + MPMX19_05924 0.59 -1.0
59,550 + MPMX19_05924 0.59 -0.3
59,550 + MPMX19_05924 0.59 +1.4
59,551 - MPMX19_05924 0.59 -1.1
59,551 - MPMX19_05924 0.59 -0.8
59,551 - MPMX19_05924 0.59 +1.7
59,551 - MPMX19_05924 0.59 +0.9
59,551 - MPMX19_05924 0.59 -0.3
59,551 - MPMX19_05924 0.59 +1.7
59,551 - MPMX19_05924 0.59 -0.7
59,568 + MPMX19_05924 0.61 +0.5
59,568 + MPMX19_05924 0.61 +0.4
59,568 + MPMX19_05924 0.61 +0.3
59,569 - MPMX19_05924 0.61 +0.9
59,569 - MPMX19_05924 0.61 -0.1
59,640 + MPMX19_05924 0.67 +0.7
59,640 + MPMX19_05924 0.67 +0.2
59,640 + MPMX19_05924 0.67 -0.3
59,641 - MPMX19_05924 0.67 +0.9
59,641 - MPMX19_05924 0.67 +0.3
59,641 - MPMX19_05924 0.67 -0.3
59,641 - MPMX19_05924 0.67 -2.1
59,641 - MPMX19_05924 0.67 -2.5
59,682 + MPMX19_05924 0.71 -0.8
59,682 + MPMX19_05924 0.71 +1.2
59,682 + MPMX19_05924 0.71 +0.8
59,682 + MPMX19_05924 0.71 -1.3
59,682 + MPMX19_05924 0.71 -0.8
59,682 + MPMX19_05924 0.71 -0.4
59,682 + MPMX19_05924 0.71 +0.7
59,683 - MPMX19_05924 0.71 -0.6
59,683 - MPMX19_05924 0.71 +0.7
59,683 - MPMX19_05924 0.71 -0.3
59,683 - MPMX19_05924 0.71 -1.1
59,683 - MPMX19_05924 0.71 +0.6
60,109 - -1.3
60,132 + +0.6
60,132 + +0.2
60,133 - -1.1
60,171 + -2.3
60,171 + +1.2
60,171 + +0.4
60,171 + -0.0
60,171 + +0.8
60,171 + -0.7
60,172 - +0.2
60,172 - -0.3
60,172 - +0.5
60,172 - -1.4
60,172 - -1.0
60,246 + MPMX19_05925 0.15 +0.1
60,246 + MPMX19_05925 0.15 +0.4
60,246 + MPMX19_05925 0.15 +0.3
60,246 + MPMX19_05925 0.15 +0.3
60,246 + MPMX19_05925 0.15 +0.0
60,246 + MPMX19_05925 0.15 -2.6
60,246 + MPMX19_05925 0.15 -0.1
60,246 + MPMX19_05925 0.15 +0.5
60,246 + MPMX19_05925 0.15 -1.8
60,246 + MPMX19_05925 0.15 -0.8
60,246 + MPMX19_05925 0.15 -1.1
60,246 + MPMX19_05925 0.15 -0.3
60,246 + MPMX19_05925 0.15 +0.5
60,246 + MPMX19_05925 0.15 -0.6
60,246 + MPMX19_05925 0.15 +0.8
60,246 + MPMX19_05925 0.15 +0.1
60,246 + MPMX19_05925 0.15 -0.1
60,246 + MPMX19_05925 0.15 -0.3
60,247 - MPMX19_05925 0.15 -0.4
60,247 - MPMX19_05925 0.15 -0.3
60,247 - MPMX19_05925 0.15 -0.7
60,247 - MPMX19_05925 0.15 -2.0
60,247 - MPMX19_05925 0.15 -0.6
60,247 - MPMX19_05925 0.15 +0.8
60,247 - MPMX19_05925 0.15 +0.5
60,247 - MPMX19_05925 0.15 -0.3
60,247 - MPMX19_05925 0.15 -0.6
60,247 - MPMX19_05925 0.15 +1.3
60,247 - MPMX19_05925 0.15 -0.6
60,247 - MPMX19_05925 0.15 -1.7
60,247 - MPMX19_05925 0.15 +0.6
60,247 - MPMX19_05925 0.15 -1.7
60,247 - MPMX19_05925 0.15 +1.1
60,247 - MPMX19_05925 0.15 -0.3
60,247 - MPMX19_05925 0.15 -2.3
60,247 - MPMX19_05925 0.15 -0.8
60,247 - MPMX19_05925 0.15 -0.7
60,247 - MPMX19_05925 0.15 -2.4
60,247 - MPMX19_05925 0.15 -0.3
60,261 + MPMX19_05925 0.16 -0.5
60,261 + MPMX19_05925 0.16 -0.4
60,261 + MPMX19_05925 0.16 +0.7
60,261 + MPMX19_05925 0.16 +0.0
60,261 + MPMX19_05925 0.16 -1.4
60,261 + MPMX19_05925 0.16 -1.6
60,262 - MPMX19_05925 0.16 -0.3
60,262 - MPMX19_05925 0.16 -0.8
60,262 - MPMX19_05925 0.16 -0.4
60,262 - MPMX19_05925 0.16 -0.3
60,262 - MPMX19_05925 0.16 -1.6
60,285 + MPMX19_05925 0.17 +1.2
60,285 + MPMX19_05925 0.17 -1.8
60,285 + MPMX19_05925 0.17 -1.1
60,286 - MPMX19_05925 0.18 +0.4
60,342 + MPMX19_05925 0.21 +0.2
60,343 - MPMX19_05925 0.22 -0.2
60,343 - MPMX19_05925 0.22 +0.9
60,343 - MPMX19_05925 0.22 -0.5
60,360 + MPMX19_05925 0.23 +0.4
60,360 + MPMX19_05925 0.23 +0.0
60,361 - MPMX19_05925 0.23 +0.2
60,361 - MPMX19_05925 0.23 -0.1
60,361 - MPMX19_05925 0.23 +0.1
60,361 - MPMX19_05925 0.23 +0.1
60,369 + MPMX19_05925 0.23 -1.7
60,370 - MPMX19_05925 0.23 -0.6
60,370 - MPMX19_05925 0.23 +0.2
60,370 - MPMX19_05925 0.23 +0.3
60,381 + MPMX19_05925 0.24 -0.4
60,381 + MPMX19_05925 0.24 -0.7
60,381 + MPMX19_05925 0.24 -1.3
60,382 - MPMX19_05925 0.24 -0.3
60,486 + MPMX19_05925 0.32 +0.7
60,486 + MPMX19_05925 0.32 -1.6
60,486 + MPMX19_05925 0.32 -0.9
60,486 + MPMX19_05925 0.32 -2.0
60,487 - MPMX19_05925 0.32 -0.4
60,487 - MPMX19_05925 0.32 -0.3
60,487 - MPMX19_05925 0.32 -1.4
60,487 - MPMX19_05925 0.32 +1.2
60,487 - MPMX19_05925 0.32 -1.2
60,487 - MPMX19_05925 0.32 +0.6
60,487 - MPMX19_05925 0.32 +0.6
60,732 + MPMX19_05925 0.49 -1.0
60,733 - MPMX19_05925 0.49 +1.7
60,738 + MPMX19_05925 0.49 -0.1
60,738 + MPMX19_05925 0.49 -0.6
60,738 + MPMX19_05925 0.49 -0.0
60,738 + MPMX19_05925 0.49 -1.2
60,738 + MPMX19_05925 0.49 -0.6
60,738 + MPMX19_05925 0.49 +0.7
60,738 + MPMX19_05925 0.49 +0.6
60,738 + MPMX19_05925 0.49 -0.1
60,738 + MPMX19_05925 0.49 +0.3
60,739 - MPMX19_05925 0.50 -0.1
60,739 - MPMX19_05925 0.50 +1.7
60,739 - MPMX19_05925 0.50 -0.8
60,739 - MPMX19_05925 0.50 -0.0
60,739 - MPMX19_05925 0.50 +2.0
60,739 - MPMX19_05925 0.50 -1.8
60,739 - MPMX19_05925 0.50 +0.7
60,739 - MPMX19_05925 0.50 -0.5
60,739 - MPMX19_05925 0.50 -1.1
60,837 + MPMX19_05925 0.56 -0.8
60,837 + MPMX19_05925 0.56 +2.3
60,837 + MPMX19_05925 0.56 -0.7
60,837 + MPMX19_05925 0.56 -2.2
60,837 + MPMX19_05925 0.56 -0.3
60,838 - MPMX19_05925 0.56 -0.7
60,838 - MPMX19_05925 0.56 -2.0
60,873 + MPMX19_05925 0.59 +0.0
60,874 - MPMX19_05925 0.59 +1.5
60,874 - MPMX19_05925 0.59 -0.4
60,874 - MPMX19_05925 0.59 -0.4
60,885 + MPMX19_05925 0.60 -1.7
60,885 + MPMX19_05925 0.60 -0.5
60,885 + MPMX19_05925 0.60 -1.0
60,885 + MPMX19_05925 0.60 -1.8
60,885 + MPMX19_05925 0.60 -1.4
60,885 + MPMX19_05925 0.60 -1.8
60,885 + MPMX19_05925 0.60 -0.6
60,885 + MPMX19_05925 0.60 -1.0
60,885 + MPMX19_05925 0.60 -1.4
60,886 - MPMX19_05925 0.60 +1.3
60,886 - MPMX19_05925 0.60 -0.3
60,886 - MPMX19_05925 0.60 +0.6
60,886 - MPMX19_05925 0.60 -1.6
60,886 - MPMX19_05925 0.60 +0.4
60,886 - MPMX19_05925 0.60 -0.1
60,886 - MPMX19_05925 0.60 -0.6
60,886 - MPMX19_05925 0.60 -0.9
60,945 + MPMX19_05925 0.64 +0.1
60,945 + MPMX19_05925 0.64 -1.2
60,945 + MPMX19_05925 0.64 -0.5
60,945 + MPMX19_05925 0.64 -0.8
60,945 + MPMX19_05925 0.64 -0.8
60,945 + MPMX19_05925 0.64 +0.0
60,945 + MPMX19_05925 0.64 +0.9
60,945 + MPMX19_05925 0.64 +0.3
60,945 + MPMX19_05925 0.64 +0.7
60,946 - MPMX19_05925 0.64 -0.0
60,946 - MPMX19_05925 0.64 -0.3
60,946 - MPMX19_05925 0.64 +0.2
60,946 - MPMX19_05925 0.64 -1.1
60,946 - MPMX19_05925 0.64 -2.0
60,946 - MPMX19_05925 0.64 -1.4

Or see this region's nucleotide sequence