Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05917

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05915 and MPMX19_05916 overlap by 1 nucleotidesMPMX19_05916 and MPMX19_05917 are separated by 13 nucleotidesMPMX19_05917 and MPMX19_05918 are separated by 94 nucleotidesMPMX19_05918 and MPMX19_05919 are separated by 4 nucleotides MPMX19_05915: MPMX19_05915 - Flagellar M-ring protein, at 50,422 to 52,140 _05915 MPMX19_05916: MPMX19_05916 - hypothetical protein, at 52,140 to 52,826 _05916 MPMX19_05917: MPMX19_05917 - hypothetical protein, at 52,840 to 53,178 _05917 MPMX19_05918: MPMX19_05918 - Flagellar biosynthetic protein FliP, at 53,273 to 54,163 _05918 MPMX19_05919: MPMX19_05919 - hypothetical protein, at 54,168 to 54,464 _05919 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 52.105 kb on - strandat 52.105 kb on - strandat 52.123 kb on + strandat 52.123 kb on + strandat 52.123 kb on + strandat 52.123 kb on + strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.124 kb on - strandat 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.921 kb on + strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.922 kb on - strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.945 kb on + strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 52.946 kb on - strand, within MPMX19_05917at 53.355 kb on + strandat 53.355 kb on + strandat 53.356 kb on - strandat 53.356 kb on - strandat 53.356 kb on - strandat 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.383 kb on + strand, within MPMX19_05918at 53.384 kb on - strand, within MPMX19_05918at 53.384 kb on - strand, within MPMX19_05918at 53.384 kb on - strand, within MPMX19_05918at 53.384 kb on - strand, within MPMX19_05918at 53.395 kb on + strand, within MPMX19_05918at 53.395 kb on + strand, within MPMX19_05918at 53.395 kb on + strand, within MPMX19_05918at 53.395 kb on + strand, within MPMX19_05918at 53.395 kb on + strand, within MPMX19_05918at 53.396 kb on - strand, within MPMX19_05918at 53.876 kb on - strand, within MPMX19_05918at 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.152 kb on + strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strandat 54.153 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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52,105 - +1.0
52,105 - +0.4
52,123 + +0.3
52,123 + -0.6
52,123 + +0.5
52,123 + -0.4
52,124 - +0.3
52,124 - -1.6
52,124 - +0.3
52,124 - -1.8
52,124 - -2.0
52,124 - -1.1
52,124 - -1.2
52,921 + MPMX19_05917 0.24 -2.8
52,921 + MPMX19_05917 0.24 +0.4
52,921 + MPMX19_05917 0.24 -0.7
52,921 + MPMX19_05917 0.24 -0.7
52,921 + MPMX19_05917 0.24 -2.3
52,921 + MPMX19_05917 0.24 +0.3
52,921 + MPMX19_05917 0.24 -0.4
52,921 + MPMX19_05917 0.24 -1.1
52,921 + MPMX19_05917 0.24 -0.4
52,921 + MPMX19_05917 0.24 -2.4
52,921 + MPMX19_05917 0.24 +0.5
52,921 + MPMX19_05917 0.24 -0.4
52,921 + MPMX19_05917 0.24 -0.2
52,921 + MPMX19_05917 0.24 +0.1
52,921 + MPMX19_05917 0.24 -1.3
52,921 + MPMX19_05917 0.24 -2.5
52,922 - MPMX19_05917 0.24 +0.7
52,922 - MPMX19_05917 0.24 -0.2
52,922 - MPMX19_05917 0.24 +0.3
52,922 - MPMX19_05917 0.24 +0.7
52,922 - MPMX19_05917 0.24 +0.2
52,922 - MPMX19_05917 0.24 -0.1
52,922 - MPMX19_05917 0.24 +0.3
52,922 - MPMX19_05917 0.24 -0.3
52,922 - MPMX19_05917 0.24 -1.7
52,922 - MPMX19_05917 0.24 -2.0
52,945 + MPMX19_05917 0.31 -0.0
52,945 + MPMX19_05917 0.31 -1.6
52,945 + MPMX19_05917 0.31 -1.6
52,945 + MPMX19_05917 0.31 +0.8
52,945 + MPMX19_05917 0.31 -0.6
52,945 + MPMX19_05917 0.31 +0.5
52,945 + MPMX19_05917 0.31 -0.4
52,945 + MPMX19_05917 0.31 -0.4
52,945 + MPMX19_05917 0.31 -1.4
52,945 + MPMX19_05917 0.31 +0.4
52,945 + MPMX19_05917 0.31 +0.5
52,945 + MPMX19_05917 0.31 -1.8
52,945 + MPMX19_05917 0.31 -0.9
52,945 + MPMX19_05917 0.31 -0.1
52,945 + MPMX19_05917 0.31 -0.8
52,945 + MPMX19_05917 0.31 +1.3
52,945 + MPMX19_05917 0.31 +0.1
52,946 - MPMX19_05917 0.31 -0.4
52,946 - MPMX19_05917 0.31 -2.0
52,946 - MPMX19_05917 0.31 -1.3
52,946 - MPMX19_05917 0.31 -1.3
52,946 - MPMX19_05917 0.31 -3.0
52,946 - MPMX19_05917 0.31 +0.9
52,946 - MPMX19_05917 0.31 +0.6
52,946 - MPMX19_05917 0.31 -0.4
52,946 - MPMX19_05917 0.31 -0.3
52,946 - MPMX19_05917 0.31 +0.0
52,946 - MPMX19_05917 0.31 -0.6
52,946 - MPMX19_05917 0.31 -0.5
52,946 - MPMX19_05917 0.31 +0.4
52,946 - MPMX19_05917 0.31 +0.7
52,946 - MPMX19_05917 0.31 -1.0
52,946 - MPMX19_05917 0.31 -0.3
53,355 + -1.4
53,355 + -0.3
53,356 - -0.3
53,356 - +0.2
53,356 - +0.5
53,383 + MPMX19_05918 0.12 +1.2
53,383 + MPMX19_05918 0.12 -0.8
53,383 + MPMX19_05918 0.12 -1.2
53,383 + MPMX19_05918 0.12 +0.7
53,383 + MPMX19_05918 0.12 -0.3
53,383 + MPMX19_05918 0.12 -0.7
53,383 + MPMX19_05918 0.12 +0.7
53,384 - MPMX19_05918 0.12 +1.2
53,384 - MPMX19_05918 0.12 -0.5
53,384 - MPMX19_05918 0.12 -0.3
53,384 - MPMX19_05918 0.12 -1.3
53,395 + MPMX19_05918 0.14 -0.2
53,395 + MPMX19_05918 0.14 +1.4
53,395 + MPMX19_05918 0.14 -0.4
53,395 + MPMX19_05918 0.14 +0.6
53,395 + MPMX19_05918 0.14 +0.1
53,396 - MPMX19_05918 0.14 -0.3
53,876 - MPMX19_05918 0.68 +0.3
54,152 + +0.4
54,152 + -0.5
54,152 + +1.7
54,152 + +0.5
54,152 + -0.0
54,152 + +0.0
54,153 - +1.6
54,153 - -1.3
54,153 - -0.7
54,153 - +0.3
54,153 - -1.1
54,153 - +2.2
54,153 - -3.2

Or see this region's nucleotide sequence