Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05811 and MPMX19_05812 are separated by 290 nucleotides MPMX19_05812 and MPMX19_05813 are separated by 36 nucleotides
MPMX19_05811: MPMX19_05811 - 2,4-dienoyl-CoA reductase, at 537,631 to 539,682
_05811
MPMX19_05812: MPMX19_05812 - Hydroxypyruvate isomerase, at 539,973 to 540,767
_05812
MPMX19_05813: MPMX19_05813 - 2-hydroxy-3-oxopropionate reductase, at 540,804 to 541,688
_05813
Position (kb) 539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.024 kb on + strand, within MPMX19_05811 at 539.024 kb on + strand, within MPMX19_05811 at 539.024 kb on + strand, within MPMX19_05811 at 539.024 kb on + strand, within MPMX19_05811 at 539.024 kb on + strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.025 kb on - strand, within MPMX19_05811 at 539.102 kb on + strand, within MPMX19_05811 at 539.103 kb on - strand, within MPMX19_05811 at 539.165 kb on + strand, within MPMX19_05811 at 539.165 kb on + strand, within MPMX19_05811 at 539.166 kb on - strand, within MPMX19_05811 at 539.166 kb on - strand, within MPMX19_05811 at 539.166 kb on - strand, within MPMX19_05811 at 539.166 kb on - strand, within MPMX19_05811 at 539.198 kb on + strand, within MPMX19_05811 at 539.198 kb on + strand, within MPMX19_05811 at 539.199 kb on - strand, within MPMX19_05811 at 539.234 kb on + strand, within MPMX19_05811 at 539.234 kb on + strand, within MPMX19_05811 at 539.234 kb on + strand, within MPMX19_05811 at 539.234 kb on + strand, within MPMX19_05811 at 539.235 kb on - strand, within MPMX19_05811 at 539.235 kb on - strand, within MPMX19_05811 at 539.235 kb on - strand, within MPMX19_05811 at 539.235 kb on - strand, within MPMX19_05811 at 539.235 kb on - strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.336 kb on + strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.337 kb on - strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.342 kb on + strand, within MPMX19_05811 at 539.343 kb on - strand, within MPMX19_05811 at 539.343 kb on - strand, within MPMX19_05811 at 539.343 kb on - strand, within MPMX19_05811 at 539.537 kb on + strand at 539.657 kb on + strand at 539.658 kb on - strand at 539.658 kb on - strand at 539.772 kb on + strand at 539.772 kb on + strand at 539.772 kb on + strand at 539.772 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.006 kb on + strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.007 kb on - strand at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.072 kb on + strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.073 kb on - strand, within MPMX19_05812 at 540.085 kb on - strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.249 kb on + strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.250 kb on - strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.354 kb on + strand, within MPMX19_05812 at 540.355 kb on - strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.432 kb on + strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.433 kb on - strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.501 kb on + strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.502 kb on - strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.510 kb on + strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.511 kb on - strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.633 kb on + strand, within MPMX19_05812 at 540.634 kb on - strand, within MPMX19_05812 at 540.634 kb on - strand, within MPMX19_05812 at 540.669 kb on + strand, within MPMX19_05812 at 540.670 kb on - strand, within MPMX19_05812 at 540.670 kb on - strand, within MPMX19_05812 at 540.693 kb on + strand at 540.693 kb on + strand at 540.693 kb on + strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.694 kb on - strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.741 kb on + strand at 540.742 kb on - strand at 540.742 kb on - strand at 540.797 kb on + strand at 540.797 kb on + strand at 540.798 kb on - strand at 540.798 kb on - strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.803 kb on + strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.804 kb on - strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.882 kb on + strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 541.110 kb on + strand, within MPMX19_05813 at 541.110 kb on + strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.111 kb on - strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.143 kb on + strand, within MPMX19_05813 at 541.144 kb on - strand, within MPMX19_05813 at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.686 kb on + strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand at 541.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 539,024 + MPMX19_05811 0.68 -1.5 539,024 + MPMX19_05811 0.68 +0.7 539,024 + MPMX19_05811 0.68 -1.7 539,024 + MPMX19_05811 0.68 -2.3 539,024 + MPMX19_05811 0.68 +0.3 539,025 - MPMX19_05811 0.68 -0.4 539,025 - MPMX19_05811 0.68 -0.5 539,025 - MPMX19_05811 0.68 +0.0 539,025 - MPMX19_05811 0.68 -0.9 539,025 - MPMX19_05811 0.68 -1.7 539,025 - MPMX19_05811 0.68 +0.4 539,025 - MPMX19_05811 0.68 +0.6 539,025 - MPMX19_05811 0.68 -0.9 539,025 - MPMX19_05811 0.68 -1.3 539,102 + MPMX19_05811 0.72 -1.7 539,103 - MPMX19_05811 0.72 -0.7 539,165 + MPMX19_05811 0.75 +0.5 539,165 + MPMX19_05811 0.75 +1.1 539,166 - MPMX19_05811 0.75 -0.8 539,166 - MPMX19_05811 0.75 +0.5 539,166 - MPMX19_05811 0.75 -1.7 539,166 - MPMX19_05811 0.75 -0.9 539,198 + MPMX19_05811 0.76 -1.1 539,198 + MPMX19_05811 0.76 -0.5 539,199 - MPMX19_05811 0.76 -1.5 539,234 + MPMX19_05811 0.78 +0.6 539,234 + MPMX19_05811 0.78 -0.4 539,234 + MPMX19_05811 0.78 +0.0 539,234 + MPMX19_05811 0.78 +0.3 539,235 - MPMX19_05811 0.78 -1.5 539,235 - MPMX19_05811 0.78 +1.3 539,235 - MPMX19_05811 0.78 -0.9 539,235 - MPMX19_05811 0.78 +0.5 539,235 - MPMX19_05811 0.78 +0.0 539,336 + MPMX19_05811 0.83 -1.3 539,336 + MPMX19_05811 0.83 -1.5 539,336 + MPMX19_05811 0.83 -1.1 539,336 + MPMX19_05811 0.83 +1.0 539,336 + MPMX19_05811 0.83 -0.2 539,336 + MPMX19_05811 0.83 -0.7 539,336 + MPMX19_05811 0.83 -0.3 539,337 - MPMX19_05811 0.83 +0.2 539,337 - MPMX19_05811 0.83 +0.5 539,337 - MPMX19_05811 0.83 +1.0 539,337 - MPMX19_05811 0.83 +0.7 539,337 - MPMX19_05811 0.83 +1.3 539,337 - MPMX19_05811 0.83 +0.0 539,342 + MPMX19_05811 0.83 -0.2 539,342 + MPMX19_05811 0.83 -0.3 539,342 + MPMX19_05811 0.83 +0.1 539,342 + MPMX19_05811 0.83 -0.7 539,342 + MPMX19_05811 0.83 -0.5 539,342 + MPMX19_05811 0.83 -0.1 539,343 - MPMX19_05811 0.83 -0.6 539,343 - MPMX19_05811 0.83 +0.9 539,343 - MPMX19_05811 0.83 -0.9 539,537 + +0.9 539,657 + -0.3 539,658 - -0.8 539,658 - +0.7 539,772 + -1.1 539,772 + +0.5 539,772 + -0.3 539,772 + +0.1 540,006 + -1.1 540,006 + -0.4 540,006 + -0.2 540,006 + +2.7 540,006 + +1.4 540,006 + -1.9 540,006 + -2.1 540,006 + -1.6 540,007 - +0.1 540,007 - +0.6 540,007 - -0.6 540,007 - -0.3 540,007 - -1.6 540,007 - -0.5 540,007 - +0.7 540,007 - -0.9 540,007 - -0.9 540,007 - +0.7 540,007 - +0.3 540,072 + MPMX19_05812 0.12 -1.9 540,072 + MPMX19_05812 0.12 -0.3 540,072 + MPMX19_05812 0.12 -0.2 540,072 + MPMX19_05812 0.12 +0.5 540,072 + MPMX19_05812 0.12 -0.1 540,073 - MPMX19_05812 0.13 +0.1 540,073 - MPMX19_05812 0.13 -1.6 540,073 - MPMX19_05812 0.13 +1.1 540,085 - MPMX19_05812 0.14 +0.0 540,249 + MPMX19_05812 0.35 +0.9 540,249 + MPMX19_05812 0.35 -0.0 540,249 + MPMX19_05812 0.35 +0.1 540,249 + MPMX19_05812 0.35 -0.1 540,249 + MPMX19_05812 0.35 +1.4 540,249 + MPMX19_05812 0.35 +0.7 540,249 + MPMX19_05812 0.35 -0.3 540,249 + MPMX19_05812 0.35 +0.1 540,250 - MPMX19_05812 0.35 -0.4 540,250 - MPMX19_05812 0.35 -0.9 540,250 - MPMX19_05812 0.35 -0.6 540,250 - MPMX19_05812 0.35 +0.0 540,250 - MPMX19_05812 0.35 -0.9 540,250 - MPMX19_05812 0.35 -1.3 540,354 + MPMX19_05812 0.48 -1.3 540,354 + MPMX19_05812 0.48 -0.7 540,354 + MPMX19_05812 0.48 +0.1 540,354 + MPMX19_05812 0.48 +0.5 540,354 + MPMX19_05812 0.48 -0.9 540,355 - MPMX19_05812 0.48 +0.4 540,432 + MPMX19_05812 0.58 +1.1 540,432 + MPMX19_05812 0.58 +1.1 540,432 + MPMX19_05812 0.58 +2.0 540,432 + MPMX19_05812 0.58 -1.3 540,432 + MPMX19_05812 0.58 +1.3 540,432 + MPMX19_05812 0.58 -1.7 540,433 - MPMX19_05812 0.58 -0.3 540,433 - MPMX19_05812 0.58 +1.0 540,433 - MPMX19_05812 0.58 +0.2 540,433 - MPMX19_05812 0.58 +1.4 540,433 - MPMX19_05812 0.58 +0.3 540,501 + MPMX19_05812 0.66 -1.0 540,501 + MPMX19_05812 0.66 -0.5 540,501 + MPMX19_05812 0.66 +0.0 540,501 + MPMX19_05812 0.66 -1.5 540,501 + MPMX19_05812 0.66 -0.4 540,502 - MPMX19_05812 0.67 +0.1 540,502 - MPMX19_05812 0.67 +0.3 540,502 - MPMX19_05812 0.67 -1.1 540,502 - MPMX19_05812 0.67 +0.2 540,510 + MPMX19_05812 0.68 +1.0 540,510 + MPMX19_05812 0.68 +0.3 540,510 + MPMX19_05812 0.68 -0.0 540,510 + MPMX19_05812 0.68 -0.6 540,510 + MPMX19_05812 0.68 +0.1 540,510 + MPMX19_05812 0.68 -0.9 540,510 + MPMX19_05812 0.68 +0.0 540,510 + MPMX19_05812 0.68 +0.6 540,510 + MPMX19_05812 0.68 +0.3 540,510 + MPMX19_05812 0.68 -1.0 540,510 + MPMX19_05812 0.68 -1.0 540,510 + MPMX19_05812 0.68 -0.8 540,510 + MPMX19_05812 0.68 +0.3 540,510 + MPMX19_05812 0.68 +0.2 540,510 + MPMX19_05812 0.68 -1.7 540,510 + MPMX19_05812 0.68 -0.0 540,510 + MPMX19_05812 0.68 +0.2 540,511 - MPMX19_05812 0.68 +1.3 540,511 - MPMX19_05812 0.68 -1.2 540,511 - MPMX19_05812 0.68 -1.0 540,511 - MPMX19_05812 0.68 -0.4 540,511 - MPMX19_05812 0.68 -0.1 540,511 - MPMX19_05812 0.68 +0.4 540,511 - MPMX19_05812 0.68 -0.9 540,511 - MPMX19_05812 0.68 -2.7 540,511 - MPMX19_05812 0.68 -0.4 540,511 - MPMX19_05812 0.68 -1.6 540,511 - MPMX19_05812 0.68 -0.8 540,511 - MPMX19_05812 0.68 -0.9 540,511 - MPMX19_05812 0.68 -0.8 540,511 - MPMX19_05812 0.68 +0.7 540,633 + MPMX19_05812 0.83 -2.1 540,633 + MPMX19_05812 0.83 +0.1 540,633 + MPMX19_05812 0.83 +1.7 540,634 - MPMX19_05812 0.83 -0.8 540,634 - MPMX19_05812 0.83 -2.2 540,669 + MPMX19_05812 0.88 -1.1 540,670 - MPMX19_05812 0.88 -0.8 540,670 - MPMX19_05812 0.88 -0.6 540,693 + -0.4 540,693 + +0.3 540,693 + -0.9 540,694 - +0.7 540,694 - +0.7 540,694 - -1.5 540,694 - -1.3 540,741 + +0.7 540,741 + +0.0 540,741 + -0.8 540,741 + -1.0 540,741 + -0.6 540,741 + -0.1 540,742 - -1.3 540,742 - +0.3 540,797 + -0.3 540,797 + -0.0 540,798 - -0.6 540,798 - -0.1 540,803 + -0.0 540,803 + +0.4 540,803 + -1.2 540,803 + -0.0 540,804 - -0.6 540,804 - +0.3 540,804 - -0.0 540,804 - +0.7 540,804 - +0.1 540,882 + -0.5 540,882 + -0.9 540,882 + +0.8 540,882 + +1.0 540,882 + -0.9 540,882 + -0.5 540,882 + -0.0 540,882 + -0.2 540,882 + -1.4 540,883 - -0.7 540,883 - -0.9 540,883 - -0.7 540,883 - -1.6 540,883 - +0.2 540,883 - -0.2 540,883 - -0.6 540,883 - -0.4 540,883 - -2.1 540,883 - -0.7 540,883 - +0.3 540,883 - +0.6 540,883 - -0.4 540,883 - +0.5 540,883 - -1.9 540,883 - -1.0 540,883 - +0.3 540,883 - -0.0 540,883 - -1.0 540,883 - -1.6 540,883 - +0.4 541,110 + MPMX19_05813 0.35 -1.2 541,110 + MPMX19_05813 0.35 -0.3 541,111 - MPMX19_05813 0.35 -0.6 541,111 - MPMX19_05813 0.35 +0.3 541,111 - MPMX19_05813 0.35 -2.9 541,111 - MPMX19_05813 0.35 -1.9 541,143 + MPMX19_05813 0.38 -1.1 541,143 + MPMX19_05813 0.38 -0.0 541,143 + MPMX19_05813 0.38 -0.5 541,144 - MPMX19_05813 0.38 -1.7 541,686 + +0.8 541,686 + -0.3 541,686 + +0.1 541,686 + -0.4 541,687 - -0.4 541,687 - +0.6 541,687 - -0.7 541,687 - -1.3 541,687 - -0.8
Or see this region's nucleotide sequence