Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05690 and MPMX19_05691 are separated by 122 nucleotides MPMX19_05691 and MPMX19_05692 are separated by 105 nucleotides MPMX19_05692 and MPMX19_05693 are separated by 125 nucleotides
MPMX19_05690: MPMX19_05690 - Protein phosphotransferase ChpT, at 406,495 to 407,178
_05690
MPMX19_05691: MPMX19_05691 - hypothetical protein, at 407,301 to 407,480
_05691
MPMX19_05692: MPMX19_05692 - hypothetical protein, at 407,586 to 407,708
_05692
MPMX19_05693: MPMX19_05693 - Sensor histidine kinase RcsC, at 407,834 to 409,639
_05693
Position (kb) 407
408 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.586 kb on + strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.587 kb on - strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.871 kb on + strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.872 kb on - strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.931 kb on + strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 406.932 kb on - strand, within MPMX19_05690 at 407.229 kb on + strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.229 kb on + strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.230 kb on - strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.231 kb on + strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.232 kb on - strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.269 kb on + strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.270 kb on - strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.273 kb on + strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.274 kb on - strand at 407.278 kb on + strand at 407.278 kb on + strand at 407.278 kb on + strand at 407.278 kb on + strand at 407.278 kb on + strand at 407.278 kb on + strand at 407.279 kb on - strand at 407.279 kb on - strand at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.371 kb on + strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.372 kb on - strand, within MPMX19_05691 at 407.547 kb on + strand at 407.547 kb on + strand at 407.548 kb on - strand at 407.548 kb on - strand at 407.548 kb on - strand at 407.548 kb on - strand at 407.727 kb on - strand at 407.769 kb on + strand at 407.769 kb on + strand at 407.770 kb on - strand at 407.770 kb on - strand at 408.200 kb on + strand, within MPMX19_05693 at 408.200 kb on + strand, within MPMX19_05693 at 408.200 kb on + strand, within MPMX19_05693 at 408.200 kb on + strand, within MPMX19_05693 at 408.200 kb on + strand, within MPMX19_05693 at 408.201 kb on - strand, within MPMX19_05693 at 408.201 kb on - strand, within MPMX19_05693 at 408.201 kb on - strand, within MPMX19_05693 at 408.386 kb on + strand, within MPMX19_05693 at 408.386 kb on + strand, within MPMX19_05693 at 408.386 kb on + strand, within MPMX19_05693 at 408.386 kb on + strand, within MPMX19_05693 at 408.386 kb on + strand, within MPMX19_05693 at 408.387 kb on - strand, within MPMX19_05693 at 408.387 kb on - strand, within MPMX19_05693 at 408.387 kb on - strand, within MPMX19_05693 at 408.387 kb on - strand, within MPMX19_05693 at 408.387 kb on - strand, within MPMX19_05693 at 408.387 kb on - strand, within MPMX19_05693 at 408.428 kb on + strand, within MPMX19_05693 at 408.428 kb on + strand, within MPMX19_05693 at 408.428 kb on + strand, within MPMX19_05693 at 408.428 kb on + strand, within MPMX19_05693 at 408.428 kb on + strand, within MPMX19_05693 at 408.428 kb on + strand, within MPMX19_05693 at 408.429 kb on - strand, within MPMX19_05693 at 408.429 kb on - strand, within MPMX19_05693 at 408.429 kb on - strand, within MPMX19_05693 at 408.429 kb on - strand, within MPMX19_05693 at 408.429 kb on - strand, within MPMX19_05693
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 406,586 + MPMX19_05690 0.13 +0.8 406,586 + MPMX19_05690 0.13 +0.2 406,586 + MPMX19_05690 0.13 -0.3 406,586 + MPMX19_05690 0.13 +0.1 406,586 + MPMX19_05690 0.13 +0.6 406,586 + MPMX19_05690 0.13 -1.1 406,586 + MPMX19_05690 0.13 +0.5 406,587 - MPMX19_05690 0.13 +0.2 406,587 - MPMX19_05690 0.13 -0.6 406,587 - MPMX19_05690 0.13 -0.1 406,587 - MPMX19_05690 0.13 +0.7 406,587 - MPMX19_05690 0.13 -0.7 406,587 - MPMX19_05690 0.13 +0.5 406,587 - MPMX19_05690 0.13 -0.2 406,587 - MPMX19_05690 0.13 +0.2 406,587 - MPMX19_05690 0.13 -1.9 406,587 - MPMX19_05690 0.13 -1.0 406,871 + MPMX19_05690 0.55 +0.2 406,871 + MPMX19_05690 0.55 -0.7 406,871 + MPMX19_05690 0.55 +0.3 406,871 + MPMX19_05690 0.55 -1.4 406,871 + MPMX19_05690 0.55 -0.1 406,871 + MPMX19_05690 0.55 +0.5 406,872 - MPMX19_05690 0.55 +0.7 406,872 - MPMX19_05690 0.55 +1.0 406,872 - MPMX19_05690 0.55 -0.1 406,931 + MPMX19_05690 0.64 -0.2 406,931 + MPMX19_05690 0.64 -1.4 406,931 + MPMX19_05690 0.64 -0.5 406,931 + MPMX19_05690 0.64 +1.3 406,931 + MPMX19_05690 0.64 +0.4 406,931 + MPMX19_05690 0.64 -1.6 406,931 + MPMX19_05690 0.64 -0.3 406,931 + MPMX19_05690 0.64 +0.3 406,932 - MPMX19_05690 0.64 -0.2 406,932 - MPMX19_05690 0.64 -0.1 406,932 - MPMX19_05690 0.64 +0.2 406,932 - MPMX19_05690 0.64 +0.2 406,932 - MPMX19_05690 0.64 +0.1 406,932 - MPMX19_05690 0.64 +0.7 406,932 - MPMX19_05690 0.64 +1.5 406,932 - MPMX19_05690 0.64 +0.1 407,229 + -0.4 407,229 + +1.7 407,229 + -1.1 407,229 + +0.4 407,229 + -2.2 407,229 + -1.2 407,229 + -0.9 407,230 - -0.3 407,230 - +0.4 407,230 - -0.4 407,230 - -1.0 407,230 - +0.3 407,230 - +1.0 407,230 - -0.4 407,230 - +0.6 407,230 - -0.3 407,230 - -1.1 407,231 + -1.3 407,231 + +2.0 407,231 + -0.9 407,231 + +0.6 407,231 + -0.6 407,231 + +1.6 407,231 + +0.5 407,232 - -0.9 407,232 - -1.5 407,232 - -0.8 407,232 - -0.2 407,232 - -0.3 407,232 - -0.6 407,232 - -0.1 407,269 + +1.3 407,269 + -1.4 407,269 + -0.5 407,269 + +1.1 407,269 + +1.0 407,269 + -0.2 407,269 + -0.5 407,270 - -2.0 407,270 - -3.5 407,270 - -0.6 407,270 - -2.1 407,270 - -0.7 407,270 - -0.3 407,270 - -0.1 407,270 - +1.3 407,270 - -0.5 407,270 - -0.6 407,270 - -0.8 407,270 - -1.6 407,270 - +0.6 407,273 + +0.2 407,273 + -1.0 407,273 + -2.5 407,273 + -0.6 407,273 + -0.3 407,273 + -0.2 407,273 + -0.2 407,273 + -0.3 407,273 + -0.6 407,273 + +2.0 407,273 + -0.3 407,273 + -1.3 407,273 + -0.4 407,273 + +0.1 407,273 + -0.3 407,273 + -0.4 407,273 + -2.1 407,273 + +0.5 407,273 + -1.9 407,273 + -0.4 407,273 + +0.1 407,273 + +0.4 407,273 + -0.5 407,273 + -2.5 407,273 + -1.9 407,273 + -2.0 407,273 + -0.7 407,273 + +0.5 407,273 + +0.1 407,273 + -1.3 407,273 + -1.1 407,273 + +0.8 407,273 + -0.7 407,273 + -0.8 407,273 + -0.5 407,273 + +0.2 407,274 - -0.4 407,274 - -0.1 407,274 - -0.3 407,274 - -0.5 407,274 - -1.1 407,274 - +0.6 407,274 - +0.6 407,274 - -1.7 407,274 - -0.6 407,274 - -3.2 407,274 - -1.9 407,274 - -2.4 407,274 - +0.1 407,274 - -0.2 407,274 - +0.3 407,274 - +0.4 407,274 - -0.5 407,274 - +1.3 407,274 - +0.5 407,274 - -0.2 407,274 - +0.3 407,274 - +0.5 407,274 - +0.4 407,274 - +0.8 407,274 - -0.6 407,274 - +0.3 407,274 - -0.3 407,274 - -1.5 407,274 - -0.4 407,274 - -1.3 407,274 - -0.6 407,274 - +0.6 407,274 - -1.2 407,274 - -0.3 407,274 - +0.3 407,274 - -1.0 407,274 - -1.0 407,274 - -0.4 407,274 - -1.1 407,278 + -0.6 407,278 + -0.0 407,278 + -1.5 407,278 + +0.9 407,278 + -1.6 407,278 + -0.9 407,279 - +0.5 407,279 - +1.2 407,371 + MPMX19_05691 0.39 -0.2 407,371 + MPMX19_05691 0.39 -0.7 407,371 + MPMX19_05691 0.39 -0.6 407,371 + MPMX19_05691 0.39 -3.6 407,371 + MPMX19_05691 0.39 -0.2 407,371 + MPMX19_05691 0.39 -0.3 407,371 + MPMX19_05691 0.39 -1.3 407,371 + MPMX19_05691 0.39 -0.2 407,371 + MPMX19_05691 0.39 -0.6 407,371 + MPMX19_05691 0.39 +0.5 407,371 + MPMX19_05691 0.39 -0.9 407,371 + MPMX19_05691 0.39 -1.7 407,371 + MPMX19_05691 0.39 -0.3 407,371 + MPMX19_05691 0.39 +0.1 407,371 + MPMX19_05691 0.39 -1.4 407,371 + MPMX19_05691 0.39 -0.5 407,371 + MPMX19_05691 0.39 -0.2 407,371 + MPMX19_05691 0.39 -1.6 407,371 + MPMX19_05691 0.39 -1.7 407,372 - MPMX19_05691 0.39 +0.5 407,372 - MPMX19_05691 0.39 -2.1 407,372 - MPMX19_05691 0.39 -0.5 407,372 - MPMX19_05691 0.39 -0.8 407,372 - MPMX19_05691 0.39 -0.8 407,372 - MPMX19_05691 0.39 -0.5 407,372 - MPMX19_05691 0.39 -0.6 407,372 - MPMX19_05691 0.39 -1.2 407,372 - MPMX19_05691 0.39 -0.5 407,372 - MPMX19_05691 0.39 +0.1 407,372 - MPMX19_05691 0.39 -0.7 407,372 - MPMX19_05691 0.39 +0.4 407,547 + -1.5 407,547 + -2.5 407,548 - -0.1 407,548 - -0.3 407,548 - +0.1 407,548 - -2.2 407,727 - -0.3 407,769 + -0.5 407,769 + -1.9 407,770 - -0.2 407,770 - -0.7 408,200 + MPMX19_05693 0.20 -1.7 408,200 + MPMX19_05693 0.20 -2.0 408,200 + MPMX19_05693 0.20 +0.5 408,200 + MPMX19_05693 0.20 -1.6 408,200 + MPMX19_05693 0.20 -2.6 408,201 - MPMX19_05693 0.20 +0.0 408,201 - MPMX19_05693 0.20 -1.2 408,201 - MPMX19_05693 0.20 -1.6 408,386 + MPMX19_05693 0.31 +0.5 408,386 + MPMX19_05693 0.31 -0.6 408,386 + MPMX19_05693 0.31 -0.8 408,386 + MPMX19_05693 0.31 -1.9 408,386 + MPMX19_05693 0.31 -1.1 408,387 - MPMX19_05693 0.31 +1.7 408,387 - MPMX19_05693 0.31 +1.1 408,387 - MPMX19_05693 0.31 -0.1 408,387 - MPMX19_05693 0.31 +0.6 408,387 - MPMX19_05693 0.31 -0.0 408,387 - MPMX19_05693 0.31 -0.2 408,428 + MPMX19_05693 0.33 +1.0 408,428 + MPMX19_05693 0.33 -0.6 408,428 + MPMX19_05693 0.33 -1.0 408,428 + MPMX19_05693 0.33 +0.4 408,428 + MPMX19_05693 0.33 -1.3 408,428 + MPMX19_05693 0.33 -0.5 408,429 - MPMX19_05693 0.33 -0.3 408,429 - MPMX19_05693 0.33 -1.3 408,429 - MPMX19_05693 0.33 +0.1 408,429 - MPMX19_05693 0.33 +0.8 408,429 - MPMX19_05693 0.33 -0.2
Or see this region's nucleotide sequence