Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05673

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05671 and MPMX19_05672 overlap by 16 nucleotidesMPMX19_05672 and MPMX19_05673 are separated by 68 nucleotidesMPMX19_05673 and MPMX19_05674 are separated by 577 nucleotides MPMX19_05671: MPMX19_05671 - L-aspartate oxidase, at 389,213 to 390,862 _05671 MPMX19_05672: MPMX19_05672 - putative nicotinate-nucleotide pyrophosphorylase [carboxylating], at 390,847 to 391,680 _05672 MPMX19_05673: MPMX19_05673 - hypothetical protein, at 391,749 to 392,303 _05673 MPMX19_05674: MPMX19_05674 - D(-)-tartrate dehydratase, at 392,881 to 394,053 _05674 Position (kb) 391 392 393Strain fitness (log2 ratio) -2 -1 0 1 2at 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.674 kb on + strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.675 kb on - strandat 391.787 kb on + strandat 391.787 kb on + strandat 391.787 kb on + strandat 391.787 kb on + strandat 391.788 kb on - strandat 391.788 kb on - strandat 391.852 kb on + strand, within MPMX19_05673at 391.852 kb on + strand, within MPMX19_05673at 391.852 kb on + strand, within MPMX19_05673at 391.852 kb on + strand, within MPMX19_05673at 391.852 kb on + strand, within MPMX19_05673at 391.852 kb on + strand, within MPMX19_05673at 391.852 kb on + strand, within MPMX19_05673at 391.853 kb on - strand, within MPMX19_05673at 391.853 kb on - strand, within MPMX19_05673at 391.853 kb on - strand, within MPMX19_05673at 391.853 kb on - strand, within MPMX19_05673at 391.853 kb on - strand, within MPMX19_05673at 391.853 kb on - strand, within MPMX19_05673at 391.853 kb on - strand, within MPMX19_05673at 391.853 kb on - strand, within MPMX19_05673at 391.853 kb on - strand, within MPMX19_05673at 391.853 kb on - strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.918 kb on + strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 391.919 kb on - strand, within MPMX19_05673at 392.071 kb on + strand, within MPMX19_05673at 392.071 kb on + strand, within MPMX19_05673at 392.071 kb on + strand, within MPMX19_05673at 392.071 kb on + strand, within MPMX19_05673at 392.071 kb on + strand, within MPMX19_05673at 392.071 kb on + strand, within MPMX19_05673at 392.071 kb on + strand, within MPMX19_05673at 392.071 kb on + strand, within MPMX19_05673at 392.072 kb on - strand, within MPMX19_05673at 392.072 kb on - strand, within MPMX19_05673at 392.072 kb on - strand, within MPMX19_05673at 392.072 kb on - strand, within MPMX19_05673at 392.072 kb on - strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.099 kb on + strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.100 kb on - strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.101 kb on + strand, within MPMX19_05673at 392.102 kb on - strand, within MPMX19_05673at 392.102 kb on - strand, within MPMX19_05673at 392.102 kb on - strand, within MPMX19_05673at 392.102 kb on - strand, within MPMX19_05673at 392.102 kb on - strand, within MPMX19_05673at 392.102 kb on - strand, within MPMX19_05673at 392.102 kb on - strand, within MPMX19_05673at 392.883 kb on - strandat 392.988 kb on + strandat 392.988 kb on + strandat 392.988 kb on + strandat 392.989 kb on - strandat 393.030 kb on - strand, within MPMX19_05674at 393.152 kb on + strand, within MPMX19_05674at 393.152 kb on + strand, within MPMX19_05674at 393.152 kb on + strand, within MPMX19_05674at 393.152 kb on + strand, within MPMX19_05674at 393.152 kb on + strand, within MPMX19_05674at 393.152 kb on + strand, within MPMX19_05674at 393.152 kb on + strand, within MPMX19_05674at 393.152 kb on + strand, within MPMX19_05674at 393.153 kb on - strand, within MPMX19_05674at 393.153 kb on - strand, within MPMX19_05674at 393.153 kb on - strand, within MPMX19_05674at 393.153 kb on - strand, within MPMX19_05674at 393.153 kb on - strand, within MPMX19_05674at 393.153 kb on - strand, within MPMX19_05674at 393.153 kb on - strand, within MPMX19_05674at 393.153 kb on - strand, within MPMX19_05674at 393.167 kb on + strand, within MPMX19_05674at 393.167 kb on + strand, within MPMX19_05674at 393.167 kb on + strand, within MPMX19_05674at 393.167 kb on + strand, within MPMX19_05674at 393.167 kb on + strand, within MPMX19_05674at 393.168 kb on - strand, within MPMX19_05674at 393.168 kb on - strand, within MPMX19_05674at 393.168 kb on - strand, within MPMX19_05674at 393.168 kb on - strand, within MPMX19_05674at 393.168 kb on - strand, within MPMX19_05674at 393.168 kb on - strand, within MPMX19_05674at 393.168 kb on - strand, within MPMX19_05674at 393.168 kb on - strand, within MPMX19_05674at 393.287 kb on + strand, within MPMX19_05674at 393.287 kb on + strand, within MPMX19_05674at 393.287 kb on + strand, within MPMX19_05674at 393.288 kb on - strand, within MPMX19_05674at 393.288 kb on - strand, within MPMX19_05674at 393.288 kb on - strand, within MPMX19_05674at 393.288 kb on - strand, within MPMX19_05674

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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391,674 + +0.3
391,674 + -0.8
391,674 + +1.0
391,674 + +0.9
391,674 + +1.1
391,674 + -1.5
391,674 + -0.6
391,674 + +1.3
391,674 + -0.2
391,674 + -0.5
391,674 + -1.1
391,674 + -1.9
391,674 + +0.9
391,674 + -1.1
391,674 + +0.2
391,674 + +0.1
391,674 + -0.3
391,674 + -1.2
391,674 + -0.9
391,674 + -1.1
391,674 + -0.7
391,674 + -0.8
391,674 + -2.0
391,674 + -0.1
391,674 + +0.1
391,675 - -0.5
391,675 - +0.4
391,675 - -0.5
391,675 - -1.0
391,675 - +1.5
391,675 - -2.1
391,675 - +0.1
391,675 - +0.9
391,675 - -0.2
391,675 - +0.9
391,675 - -0.9
391,675 - -1.0
391,675 - +0.4
391,675 - +1.7
391,675 - -1.5
391,675 - -0.9
391,675 - -0.6
391,675 - -2.0
391,675 - -0.9
391,675 - -1.0
391,787 + -0.7
391,787 + +0.5
391,787 + -0.9
391,787 + -0.3
391,788 - -0.7
391,788 - -0.5
391,852 + MPMX19_05673 0.19 -1.4
391,852 + MPMX19_05673 0.19 -0.3
391,852 + MPMX19_05673 0.19 +0.1
391,852 + MPMX19_05673 0.19 -0.1
391,852 + MPMX19_05673 0.19 +1.4
391,852 + MPMX19_05673 0.19 -0.7
391,852 + MPMX19_05673 0.19 -0.4
391,853 - MPMX19_05673 0.19 -1.4
391,853 - MPMX19_05673 0.19 -0.2
391,853 - MPMX19_05673 0.19 -0.7
391,853 - MPMX19_05673 0.19 -0.6
391,853 - MPMX19_05673 0.19 -0.3
391,853 - MPMX19_05673 0.19 -0.5
391,853 - MPMX19_05673 0.19 +0.3
391,853 - MPMX19_05673 0.19 +0.3
391,853 - MPMX19_05673 0.19 -0.7
391,853 - MPMX19_05673 0.19 -0.5
391,918 + MPMX19_05673 0.30 -0.6
391,918 + MPMX19_05673 0.30 +0.9
391,918 + MPMX19_05673 0.30 +0.3
391,918 + MPMX19_05673 0.30 -0.7
391,918 + MPMX19_05673 0.30 -1.1
391,918 + MPMX19_05673 0.30 -0.6
391,918 + MPMX19_05673 0.30 -1.3
391,918 + MPMX19_05673 0.30 -0.3
391,918 + MPMX19_05673 0.30 -2.4
391,918 + MPMX19_05673 0.30 +0.5
391,918 + MPMX19_05673 0.30 -0.7
391,918 + MPMX19_05673 0.30 +0.1
391,918 + MPMX19_05673 0.30 -0.3
391,918 + MPMX19_05673 0.30 -0.9
391,918 + MPMX19_05673 0.30 -1.2
391,918 + MPMX19_05673 0.30 -0.1
391,918 + MPMX19_05673 0.30 -0.1
391,918 + MPMX19_05673 0.30 +0.1
391,918 + MPMX19_05673 0.30 -1.6
391,918 + MPMX19_05673 0.30 -0.7
391,918 + MPMX19_05673 0.30 -0.7
391,918 + MPMX19_05673 0.30 -0.0
391,918 + MPMX19_05673 0.30 -0.3
391,918 + MPMX19_05673 0.30 -0.0
391,918 + MPMX19_05673 0.30 -0.8
391,919 - MPMX19_05673 0.31 -1.5
391,919 - MPMX19_05673 0.31 -1.9
391,919 - MPMX19_05673 0.31 +0.7
391,919 - MPMX19_05673 0.31 -0.0
391,919 - MPMX19_05673 0.31 -1.6
391,919 - MPMX19_05673 0.31 -0.0
391,919 - MPMX19_05673 0.31 -0.2
391,919 - MPMX19_05673 0.31 -0.4
391,919 - MPMX19_05673 0.31 -1.5
391,919 - MPMX19_05673 0.31 -1.2
391,919 - MPMX19_05673 0.31 -1.7
391,919 - MPMX19_05673 0.31 +0.5
391,919 - MPMX19_05673 0.31 -1.7
391,919 - MPMX19_05673 0.31 -0.4
391,919 - MPMX19_05673 0.31 -0.9
391,919 - MPMX19_05673 0.31 +0.5
391,919 - MPMX19_05673 0.31 +0.3
391,919 - MPMX19_05673 0.31 -1.9
391,919 - MPMX19_05673 0.31 +0.1
391,919 - MPMX19_05673 0.31 -0.3
391,919 - MPMX19_05673 0.31 +0.4
391,919 - MPMX19_05673 0.31 -0.3
391,919 - MPMX19_05673 0.31 +0.4
391,919 - MPMX19_05673 0.31 +0.4
391,919 - MPMX19_05673 0.31 -2.1
391,919 - MPMX19_05673 0.31 +0.2
392,071 + MPMX19_05673 0.58 +0.5
392,071 + MPMX19_05673 0.58 -0.4
392,071 + MPMX19_05673 0.58 -0.3
392,071 + MPMX19_05673 0.58 -0.0
392,071 + MPMX19_05673 0.58 -1.0
392,071 + MPMX19_05673 0.58 -0.1
392,071 + MPMX19_05673 0.58 -0.1
392,071 + MPMX19_05673 0.58 -0.3
392,072 - MPMX19_05673 0.58 -0.4
392,072 - MPMX19_05673 0.58 +0.2
392,072 - MPMX19_05673 0.58 -0.8
392,072 - MPMX19_05673 0.58 -1.0
392,072 - MPMX19_05673 0.58 +0.1
392,099 + MPMX19_05673 0.63 +0.2
392,099 + MPMX19_05673 0.63 -0.1
392,099 + MPMX19_05673 0.63 +0.5
392,099 + MPMX19_05673 0.63 -0.9
392,099 + MPMX19_05673 0.63 -1.7
392,099 + MPMX19_05673 0.63 -1.1
392,099 + MPMX19_05673 0.63 +0.6
392,099 + MPMX19_05673 0.63 -0.6
392,099 + MPMX19_05673 0.63 -1.6
392,099 + MPMX19_05673 0.63 -1.3
392,099 + MPMX19_05673 0.63 +0.3
392,099 + MPMX19_05673 0.63 +0.9
392,099 + MPMX19_05673 0.63 +0.3
392,099 + MPMX19_05673 0.63 +1.1
392,099 + MPMX19_05673 0.63 -0.6
392,099 + MPMX19_05673 0.63 -1.0
392,100 - MPMX19_05673 0.63 -0.9
392,100 - MPMX19_05673 0.63 -0.1
392,100 - MPMX19_05673 0.63 -0.8
392,100 - MPMX19_05673 0.63 -1.5
392,100 - MPMX19_05673 0.63 -1.6
392,100 - MPMX19_05673 0.63 -0.1
392,100 - MPMX19_05673 0.63 +1.1
392,100 - MPMX19_05673 0.63 +1.0
392,100 - MPMX19_05673 0.63 -0.2
392,100 - MPMX19_05673 0.63 +1.6
392,100 - MPMX19_05673 0.63 +0.8
392,100 - MPMX19_05673 0.63 -0.7
392,100 - MPMX19_05673 0.63 +0.4
392,100 - MPMX19_05673 0.63 +0.4
392,100 - MPMX19_05673 0.63 -2.0
392,100 - MPMX19_05673 0.63 -1.9
392,100 - MPMX19_05673 0.63 -0.1
392,100 - MPMX19_05673 0.63 +1.4
392,100 - MPMX19_05673 0.63 -1.6
392,100 - MPMX19_05673 0.63 -1.3
392,100 - MPMX19_05673 0.63 -0.0
392,100 - MPMX19_05673 0.63 -1.5
392,101 + MPMX19_05673 0.63 -1.3
392,101 + MPMX19_05673 0.63 +1.0
392,101 + MPMX19_05673 0.63 -0.3
392,101 + MPMX19_05673 0.63 -0.3
392,101 + MPMX19_05673 0.63 -0.9
392,101 + MPMX19_05673 0.63 +0.5
392,101 + MPMX19_05673 0.63 -0.0
392,101 + MPMX19_05673 0.63 +1.1
392,101 + MPMX19_05673 0.63 -0.1
392,101 + MPMX19_05673 0.63 -0.3
392,101 + MPMX19_05673 0.63 -0.6
392,101 + MPMX19_05673 0.63 +0.9
392,101 + MPMX19_05673 0.63 +0.1
392,101 + MPMX19_05673 0.63 -0.3
392,101 + MPMX19_05673 0.63 -1.6
392,101 + MPMX19_05673 0.63 +0.4
392,102 - MPMX19_05673 0.64 -0.6
392,102 - MPMX19_05673 0.64 -0.7
392,102 - MPMX19_05673 0.64 -1.7
392,102 - MPMX19_05673 0.64 -0.5
392,102 - MPMX19_05673 0.64 +0.3
392,102 - MPMX19_05673 0.64 -1.2
392,102 - MPMX19_05673 0.64 -0.7
392,883 - -0.7
392,988 + +0.0
392,988 + +1.1
392,988 + +0.3
392,989 - +0.4
393,030 - MPMX19_05674 0.13 -0.1
393,152 + MPMX19_05674 0.23 -1.7
393,152 + MPMX19_05674 0.23 -1.0
393,152 + MPMX19_05674 0.23 -2.4
393,152 + MPMX19_05674 0.23 -0.2
393,152 + MPMX19_05674 0.23 -1.0
393,152 + MPMX19_05674 0.23 -0.1
393,152 + MPMX19_05674 0.23 -0.3
393,152 + MPMX19_05674 0.23 +1.2
393,153 - MPMX19_05674 0.23 +0.1
393,153 - MPMX19_05674 0.23 +0.7
393,153 - MPMX19_05674 0.23 +0.2
393,153 - MPMX19_05674 0.23 -0.9
393,153 - MPMX19_05674 0.23 +0.2
393,153 - MPMX19_05674 0.23 -1.3
393,153 - MPMX19_05674 0.23 -1.7
393,153 - MPMX19_05674 0.23 -1.1
393,167 + MPMX19_05674 0.24 +0.5
393,167 + MPMX19_05674 0.24 +0.3
393,167 + MPMX19_05674 0.24 -0.3
393,167 + MPMX19_05674 0.24 +0.0
393,167 + MPMX19_05674 0.24 -1.7
393,168 - MPMX19_05674 0.24 +1.3
393,168 - MPMX19_05674 0.24 -1.3
393,168 - MPMX19_05674 0.24 -0.2
393,168 - MPMX19_05674 0.24 +1.1
393,168 - MPMX19_05674 0.24 +2.4
393,168 - MPMX19_05674 0.24 -2.2
393,168 - MPMX19_05674 0.24 +0.1
393,168 - MPMX19_05674 0.24 -2.7
393,287 + MPMX19_05674 0.35 -0.6
393,287 + MPMX19_05674 0.35 -0.3
393,287 + MPMX19_05674 0.35 -1.7
393,288 - MPMX19_05674 0.35 +0.1
393,288 - MPMX19_05674 0.35 -1.4
393,288 - MPMX19_05674 0.35 +0.3
393,288 - MPMX19_05674 0.35 -0.3

Or see this region's nucleotide sequence