Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05621

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05619 and MPMX19_05620 are separated by 49 nucleotidesMPMX19_05620 and MPMX19_05621 overlap by 14 nucleotidesMPMX19_05621 and MPMX19_05622 are separated by 63 nucleotides MPMX19_05619: MPMX19_05619 - Aminopyrimidine aminohydrolase, at 333,689 to 334,375 _05619 MPMX19_05620: MPMX19_05620 - hypothetical protein, at 334,425 to 335,264 _05620 MPMX19_05621: MPMX19_05621 - ABC transporter ATP-binding protein NatA, at 335,251 to 336,078 _05621 MPMX19_05622: MPMX19_05622 - Sensor histidine kinase RegB, at 336,142 to 337,536 _05622 Position (kb) 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 334.302 kb on + strand, within MPMX19_05619at 334.302 kb on + strand, within MPMX19_05619at 334.302 kb on + strand, within MPMX19_05619at 334.302 kb on + strand, within MPMX19_05619at 334.302 kb on + strand, within MPMX19_05619at 334.302 kb on + strand, within MPMX19_05619at 334.302 kb on + strand, within MPMX19_05619at 334.302 kb on + strand, within MPMX19_05619at 334.302 kb on + strand, within MPMX19_05619at 334.302 kb on + strand, within MPMX19_05619at 334.302 kb on + strand, within MPMX19_05619at 334.303 kb on - strand, within MPMX19_05619at 334.303 kb on - strand, within MPMX19_05619at 334.303 kb on - strand, within MPMX19_05619at 334.303 kb on - strand, within MPMX19_05619at 334.303 kb on - strand, within MPMX19_05619at 334.419 kb on + strandat 334.420 kb on - strandat 334.420 kb on - strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.477 kb on + strandat 334.478 kb on - strandat 334.478 kb on - strandat 334.478 kb on - strandat 334.478 kb on - strandat 334.478 kb on - strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.507 kb on + strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.508 kb on - strandat 334.654 kb on + strand, within MPMX19_05620at 334.654 kb on + strand, within MPMX19_05620at 334.655 kb on - strand, within MPMX19_05620at 334.655 kb on - strand, within MPMX19_05620at 334.657 kb on + strand, within MPMX19_05620at 334.657 kb on + strand, within MPMX19_05620at 334.657 kb on + strand, within MPMX19_05620at 334.657 kb on + strand, within MPMX19_05620at 334.657 kb on + strand, within MPMX19_05620at 334.657 kb on + strand, within MPMX19_05620at 334.657 kb on + strand, within MPMX19_05620at 334.657 kb on + strand, within MPMX19_05620at 334.658 kb on - strand, within MPMX19_05620at 334.658 kb on - strand, within MPMX19_05620at 334.658 kb on - strand, within MPMX19_05620at 334.658 kb on - strand, within MPMX19_05620at 334.658 kb on - strand, within MPMX19_05620at 334.658 kb on - strand, within MPMX19_05620at 334.658 kb on - strand, within MPMX19_05620at 334.658 kb on - strand, within MPMX19_05620at 334.658 kb on - strand, within MPMX19_05620at 334.658 kb on - strand, within MPMX19_05620at 334.724 kb on - strand, within MPMX19_05620at 334.724 kb on - strand, within MPMX19_05620at 334.825 kb on + strand, within MPMX19_05620at 335.110 kb on + strand, within MPMX19_05620at 335.110 kb on + strand, within MPMX19_05620at 335.111 kb on - strand, within MPMX19_05620at 335.111 kb on - strand, within MPMX19_05620at 335.111 kb on - strand, within MPMX19_05620at 335.111 kb on - strand, within MPMX19_05620at 335.111 kb on - strand, within MPMX19_05620at 335.143 kb on + strand, within MPMX19_05620at 335.143 kb on + strand, within MPMX19_05620at 335.143 kb on + strand, within MPMX19_05620at 335.143 kb on + strand, within MPMX19_05620at 335.143 kb on + strand, within MPMX19_05620at 335.144 kb on - strand, within MPMX19_05620at 335.144 kb on - strand, within MPMX19_05620at 335.144 kb on - strand, within MPMX19_05620at 335.144 kb on - strand, within MPMX19_05620at 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.185 kb on + strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.186 kb on - strandat 335.191 kb on + strandat 335.192 kb on - strandat 335.495 kb on + strand, within MPMX19_05621at 335.495 kb on + strand, within MPMX19_05621at 335.495 kb on + strand, within MPMX19_05621at 335.495 kb on + strand, within MPMX19_05621at 335.495 kb on + strand, within MPMX19_05621at 335.495 kb on + strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.496 kb on - strand, within MPMX19_05621at 335.706 kb on - strand, within MPMX19_05621at 335.717 kb on + strand, within MPMX19_05621at 335.717 kb on + strand, within MPMX19_05621at 335.717 kb on + strand, within MPMX19_05621at 335.717 kb on + strand, within MPMX19_05621at 335.717 kb on + strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.718 kb on - strand, within MPMX19_05621at 335.724 kb on + strand, within MPMX19_05621at 335.725 kb on - strand, within MPMX19_05621at 335.725 kb on - strand, within MPMX19_05621at 335.765 kb on + strand, within MPMX19_05621at 335.765 kb on + strand, within MPMX19_05621at 335.765 kb on + strand, within MPMX19_05621at 335.765 kb on + strand, within MPMX19_05621at 335.765 kb on + strand, within MPMX19_05621at 335.766 kb on - strand, within MPMX19_05621at 335.766 kb on - strand, within MPMX19_05621at 335.766 kb on - strand, within MPMX19_05621at 335.766 kb on - strand, within MPMX19_05621at 336.089 kb on + strandat 336.089 kb on + strandat 336.089 kb on + strandat 336.089 kb on + strandat 336.089 kb on + strandat 336.089 kb on + strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.090 kb on - strandat 336.427 kb on + strand, within MPMX19_05622at 336.427 kb on + strand, within MPMX19_05622at 336.427 kb on + strand, within MPMX19_05622at 336.427 kb on + strand, within MPMX19_05622at 336.427 kb on + strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.428 kb on - strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.436 kb on + strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.437 kb on - strand, within MPMX19_05622at 336.439 kb on - strand, within MPMX19_05622at 336.466 kb on + strand, within MPMX19_05622at 336.466 kb on + strand, within MPMX19_05622at 336.466 kb on + strand, within MPMX19_05622at 336.466 kb on + strand, within MPMX19_05622at 336.467 kb on - strand, within MPMX19_05622at 336.467 kb on - strand, within MPMX19_05622at 336.467 kb on - strand, within MPMX19_05622at 336.467 kb on - strand, within MPMX19_05622at 336.467 kb on - strand, within MPMX19_05622at 336.547 kb on + strand, within MPMX19_05622at 336.548 kb on - strand, within MPMX19_05622at 336.655 kb on + strand, within MPMX19_05622at 336.655 kb on + strand, within MPMX19_05622at 336.655 kb on + strand, within MPMX19_05622at 336.655 kb on + strand, within MPMX19_05622at 336.655 kb on + strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.656 kb on - strand, within MPMX19_05622at 336.709 kb on + strand, within MPMX19_05622at 336.709 kb on + strand, within MPMX19_05622at 336.709 kb on + strand, within MPMX19_05622at 336.709 kb on + strand, within MPMX19_05622at 336.709 kb on + strand, within MPMX19_05622at 336.710 kb on - strand, within MPMX19_05622at 336.710 kb on - strand, within MPMX19_05622at 336.710 kb on - strand, within MPMX19_05622at 336.710 kb on - strand, within MPMX19_05622at 336.908 kb on - strand, within MPMX19_05622at 336.908 kb on - strand, within MPMX19_05622at 336.908 kb on - strand, within MPMX19_05622at 336.908 kb on - strand, within MPMX19_05622at 336.908 kb on - strand, within MPMX19_05622

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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334,302 + MPMX19_05619 0.89 -0.3
334,302 + MPMX19_05619 0.89 -1.3
334,302 + MPMX19_05619 0.89 -0.4
334,302 + MPMX19_05619 0.89 -0.3
334,302 + MPMX19_05619 0.89 +0.4
334,302 + MPMX19_05619 0.89 -0.6
334,302 + MPMX19_05619 0.89 +0.9
334,302 + MPMX19_05619 0.89 -0.6
334,302 + MPMX19_05619 0.89 -1.6
334,302 + MPMX19_05619 0.89 -1.4
334,302 + MPMX19_05619 0.89 +0.1
334,303 - MPMX19_05619 0.89 +1.7
334,303 - MPMX19_05619 0.89 +0.4
334,303 - MPMX19_05619 0.89 +0.2
334,303 - MPMX19_05619 0.89 -1.4
334,303 - MPMX19_05619 0.89 +1.0
334,419 + -0.7
334,420 - +0.7
334,420 - +0.9
334,477 + +0.7
334,477 + +0.0
334,477 + +1.2
334,477 + +0.5
334,477 + +1.7
334,477 + -0.6
334,477 + +1.2
334,477 + +0.2
334,477 + +0.3
334,477 + +0.7
334,477 + -0.4
334,477 + -0.4
334,477 + -0.7
334,478 - +1.3
334,478 - -1.1
334,478 - +0.7
334,478 - +0.6
334,478 - -1.3
334,507 + -1.3
334,507 + -0.8
334,507 + -2.2
334,507 + -0.4
334,507 + -0.4
334,507 + -1.7
334,507 + -0.6
334,507 + +0.6
334,507 + +1.0
334,507 + -1.6
334,507 + -1.4
334,507 + -1.4
334,507 + +0.4
334,507 + +0.7
334,507 + +0.6
334,508 - +1.2
334,508 - +0.1
334,508 - -0.1
334,508 - -1.2
334,508 - +0.5
334,508 - -1.7
334,508 - -0.7
334,508 - +0.3
334,508 - -1.6
334,508 - +0.0
334,508 - +0.5
334,508 - -0.4
334,508 - -0.8
334,508 - +0.1
334,508 - -2.4
334,508 - +0.0
334,508 - +0.4
334,508 - -2.3
334,508 - +0.2
334,508 - -0.5
334,654 + MPMX19_05620 0.27 +0.1
334,654 + MPMX19_05620 0.27 -1.1
334,655 - MPMX19_05620 0.27 -0.2
334,655 - MPMX19_05620 0.27 -0.3
334,657 + MPMX19_05620 0.28 +1.5
334,657 + MPMX19_05620 0.28 -0.8
334,657 + MPMX19_05620 0.28 -0.1
334,657 + MPMX19_05620 0.28 +1.0
334,657 + MPMX19_05620 0.28 +1.2
334,657 + MPMX19_05620 0.28 +1.7
334,657 + MPMX19_05620 0.28 -1.6
334,657 + MPMX19_05620 0.28 -0.4
334,658 - MPMX19_05620 0.28 -0.3
334,658 - MPMX19_05620 0.28 +0.0
334,658 - MPMX19_05620 0.28 -0.7
334,658 - MPMX19_05620 0.28 +1.7
334,658 - MPMX19_05620 0.28 +0.6
334,658 - MPMX19_05620 0.28 +0.5
334,658 - MPMX19_05620 0.28 +0.2
334,658 - MPMX19_05620 0.28 -0.1
334,658 - MPMX19_05620 0.28 +0.1
334,658 - MPMX19_05620 0.28 -2.0
334,724 - MPMX19_05620 0.36 -0.5
334,724 - MPMX19_05620 0.36 -0.2
334,825 + MPMX19_05620 0.48 -0.6
335,110 + MPMX19_05620 0.82 -0.8
335,110 + MPMX19_05620 0.82 -0.3
335,111 - MPMX19_05620 0.82 +0.9
335,111 - MPMX19_05620 0.82 -1.3
335,111 - MPMX19_05620 0.82 -1.3
335,111 - MPMX19_05620 0.82 -0.0
335,111 - MPMX19_05620 0.82 -0.8
335,143 + MPMX19_05620 0.85 -0.9
335,143 + MPMX19_05620 0.85 +0.3
335,143 + MPMX19_05620 0.85 +1.2
335,143 + MPMX19_05620 0.85 -2.0
335,143 + MPMX19_05620 0.85 +0.9
335,144 - MPMX19_05620 0.86 -0.8
335,144 - MPMX19_05620 0.86 +0.4
335,144 - MPMX19_05620 0.86 -0.5
335,144 - MPMX19_05620 0.86 -0.3
335,185 + -1.8
335,185 + +0.2
335,185 + -0.6
335,185 + +1.3
335,185 + -0.6
335,185 + +0.4
335,185 + -0.4
335,185 + -0.7
335,185 + +0.3
335,186 - -1.2
335,186 - -2.0
335,186 - +2.0
335,186 - -0.7
335,186 - -0.3
335,186 - +0.3
335,186 - -3.5
335,186 - -1.4
335,186 - -0.5
335,186 - -1.0
335,186 - -0.8
335,191 + +0.4
335,192 - -1.5
335,495 + MPMX19_05621 0.29 -0.8
335,495 + MPMX19_05621 0.29 -0.4
335,495 + MPMX19_05621 0.29 -0.1
335,495 + MPMX19_05621 0.29 -0.7
335,495 + MPMX19_05621 0.29 +0.3
335,495 + MPMX19_05621 0.29 -0.6
335,496 - MPMX19_05621 0.30 +1.2
335,496 - MPMX19_05621 0.30 -0.8
335,496 - MPMX19_05621 0.30 +0.5
335,496 - MPMX19_05621 0.30 -0.7
335,496 - MPMX19_05621 0.30 -0.1
335,496 - MPMX19_05621 0.30 +0.5
335,496 - MPMX19_05621 0.30 +1.2
335,496 - MPMX19_05621 0.30 +1.2
335,706 - MPMX19_05621 0.55 -0.7
335,717 + MPMX19_05621 0.56 +0.0
335,717 + MPMX19_05621 0.56 -0.3
335,717 + MPMX19_05621 0.56 +1.0
335,717 + MPMX19_05621 0.56 +1.2
335,717 + MPMX19_05621 0.56 +1.3
335,718 - MPMX19_05621 0.56 +0.4
335,718 - MPMX19_05621 0.56 -0.8
335,718 - MPMX19_05621 0.56 +1.0
335,718 - MPMX19_05621 0.56 -0.3
335,718 - MPMX19_05621 0.56 -0.1
335,718 - MPMX19_05621 0.56 -0.8
335,718 - MPMX19_05621 0.56 -0.7
335,724 + MPMX19_05621 0.57 +1.5
335,725 - MPMX19_05621 0.57 -0.6
335,725 - MPMX19_05621 0.57 +2.1
335,765 + MPMX19_05621 0.62 -0.8
335,765 + MPMX19_05621 0.62 +1.7
335,765 + MPMX19_05621 0.62 -1.0
335,765 + MPMX19_05621 0.62 +0.1
335,765 + MPMX19_05621 0.62 -0.3
335,766 - MPMX19_05621 0.62 +0.8
335,766 - MPMX19_05621 0.62 +2.0
335,766 - MPMX19_05621 0.62 +0.9
335,766 - MPMX19_05621 0.62 -0.3
336,089 + -1.1
336,089 + +0.1
336,089 + -1.3
336,089 + -0.4
336,089 + -1.8
336,089 + -0.4
336,090 - -0.3
336,090 - -0.4
336,090 - -0.3
336,090 - -0.1
336,090 - -0.5
336,090 - -0.1
336,090 - +0.0
336,090 - -0.3
336,427 + MPMX19_05622 0.20 -0.7
336,427 + MPMX19_05622 0.20 +1.2
336,427 + MPMX19_05622 0.20 +0.4
336,427 + MPMX19_05622 0.20 +1.5
336,427 + MPMX19_05622 0.20 +1.7
336,428 - MPMX19_05622 0.21 -0.8
336,428 - MPMX19_05622 0.21 +0.9
336,428 - MPMX19_05622 0.21 -1.3
336,428 - MPMX19_05622 0.21 +0.6
336,428 - MPMX19_05622 0.21 +0.2
336,428 - MPMX19_05622 0.21 +0.5
336,428 - MPMX19_05622 0.21 +0.9
336,428 - MPMX19_05622 0.21 +0.3
336,428 - MPMX19_05622 0.21 -0.5
336,428 - MPMX19_05622 0.21 -0.4
336,436 + MPMX19_05622 0.21 +0.0
336,436 + MPMX19_05622 0.21 +0.8
336,436 + MPMX19_05622 0.21 +1.5
336,436 + MPMX19_05622 0.21 +4.3
336,436 + MPMX19_05622 0.21 -1.3
336,436 + MPMX19_05622 0.21 -0.1
336,436 + MPMX19_05622 0.21 +1.3
336,437 - MPMX19_05622 0.21 -0.7
336,437 - MPMX19_05622 0.21 -1.3
336,437 - MPMX19_05622 0.21 -0.5
336,437 - MPMX19_05622 0.21 -0.6
336,437 - MPMX19_05622 0.21 -0.2
336,437 - MPMX19_05622 0.21 +0.3
336,437 - MPMX19_05622 0.21 -2.3
336,437 - MPMX19_05622 0.21 -1.0
336,437 - MPMX19_05622 0.21 -0.7
336,437 - MPMX19_05622 0.21 +0.2
336,439 - MPMX19_05622 0.21 -0.4
336,466 + MPMX19_05622 0.23 +0.7
336,466 + MPMX19_05622 0.23 +1.1
336,466 + MPMX19_05622 0.23 -0.6
336,466 + MPMX19_05622 0.23 -0.6
336,467 - MPMX19_05622 0.23 -0.1
336,467 - MPMX19_05622 0.23 +0.3
336,467 - MPMX19_05622 0.23 +0.9
336,467 - MPMX19_05622 0.23 -0.8
336,467 - MPMX19_05622 0.23 +1.2
336,547 + MPMX19_05622 0.29 +0.2
336,548 - MPMX19_05622 0.29 -0.1
336,655 + MPMX19_05622 0.37 -1.1
336,655 + MPMX19_05622 0.37 +0.2
336,655 + MPMX19_05622 0.37 -1.4
336,655 + MPMX19_05622 0.37 +0.7
336,655 + MPMX19_05622 0.37 +1.7
336,656 - MPMX19_05622 0.37 +0.7
336,656 - MPMX19_05622 0.37 +0.6
336,656 - MPMX19_05622 0.37 +0.8
336,656 - MPMX19_05622 0.37 +1.2
336,656 - MPMX19_05622 0.37 -0.8
336,656 - MPMX19_05622 0.37 +0.3
336,656 - MPMX19_05622 0.37 +0.7
336,709 + MPMX19_05622 0.41 +0.5
336,709 + MPMX19_05622 0.41 -0.8
336,709 + MPMX19_05622 0.41 -0.4
336,709 + MPMX19_05622 0.41 -1.7
336,709 + MPMX19_05622 0.41 +0.6
336,710 - MPMX19_05622 0.41 -0.5
336,710 - MPMX19_05622 0.41 -1.3
336,710 - MPMX19_05622 0.41 -0.2
336,710 - MPMX19_05622 0.41 +0.6
336,908 - MPMX19_05622 0.55 -0.6
336,908 - MPMX19_05622 0.55 -0.4
336,908 - MPMX19_05622 0.55 -0.5
336,908 - MPMX19_05622 0.55 -1.2
336,908 - MPMX19_05622 0.55 +0.6

Or see this region's nucleotide sequence