Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05577 and MPMX19_05578 overlap by 8 nucleotides MPMX19_05578 and MPMX19_05579 are separated by 150 nucleotides
MPMX19_05577: MPMX19_05577 - Lipopolysaccharide export system ATP-binding protein LptB, at 286,565 to 287,332
_05577
MPMX19_05578: MPMX19_05578 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 287,325 to 288,047
_05578
MPMX19_05579: MPMX19_05579 - hypothetical protein, at 288,198 to 289,406
_05579
Position (kb) 287
288
289 Strain fitness (log2 ratio) -2
-1
0
1
2 at 286.361 kb on + strand at 286.476 kb on + strand at 286.476 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.521 kb on + strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.522 kb on - strand at 286.534 kb on + strand at 286.534 kb on + strand at 286.534 kb on + strand at 286.534 kb on + strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 286.535 kb on - strand at 287.311 kb on + strand at 287.311 kb on + strand at 287.311 kb on + strand at 287.311 kb on + strand at 287.311 kb on + strand at 287.311 kb on + strand at 287.311 kb on + strand at 287.311 kb on + strand at 287.311 kb on + strand at 287.311 kb on + strand at 287.311 kb on + strand at 287.311 kb on + strand at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.567 kb on + strand, within MPMX19_05578 at 287.568 kb on - strand, within MPMX19_05578 at 287.568 kb on - strand, within MPMX19_05578 at 287.568 kb on - strand, within MPMX19_05578 at 287.568 kb on - strand, within MPMX19_05578 at 287.568 kb on - strand, within MPMX19_05578 at 287.568 kb on - strand, within MPMX19_05578 at 287.568 kb on - strand, within MPMX19_05578 at 287.568 kb on - strand, within MPMX19_05578 at 287.568 kb on - strand, within MPMX19_05578 at 287.568 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 287.593 kb on - strand, within MPMX19_05578 at 288.033 kb on + strand at 288.033 kb on + strand at 288.033 kb on + strand at 288.033 kb on + strand at 288.033 kb on + strand at 288.033 kb on + strand at 288.033 kb on + strand at 288.033 kb on + strand at 288.033 kb on + strand at 288.045 kb on + strand at 288.045 kb on + strand at 288.045 kb on + strand at 288.045 kb on + strand at 288.045 kb on + strand at 288.172 kb on + strand at 288.173 kb on - strand at 288.173 kb on - strand at 288.173 kb on - strand at 288.321 kb on + strand, within MPMX19_05579 at 288.321 kb on + strand, within MPMX19_05579 at 288.321 kb on + strand, within MPMX19_05579 at 288.321 kb on + strand, within MPMX19_05579 at 288.321 kb on + strand, within MPMX19_05579 at 288.321 kb on + strand, within MPMX19_05579 at 288.321 kb on + strand, within MPMX19_05579 at 288.321 kb on + strand, within MPMX19_05579 at 288.321 kb on + strand, within MPMX19_05579 at 288.321 kb on + strand, within MPMX19_05579 at 288.321 kb on + strand, within MPMX19_05579 at 288.322 kb on - strand, within MPMX19_05579 at 288.322 kb on - strand, within MPMX19_05579 at 288.322 kb on - strand, within MPMX19_05579 at 288.322 kb on - strand, within MPMX19_05579 at 288.322 kb on - strand, within MPMX19_05579 at 288.322 kb on - strand, within MPMX19_05579 at 288.322 kb on - strand, within MPMX19_05579 at 288.322 kb on - strand, within MPMX19_05579 at 288.322 kb on - strand, within MPMX19_05579 at 288.618 kb on + strand, within MPMX19_05579 at 288.618 kb on + strand, within MPMX19_05579 at 288.636 kb on + strand, within MPMX19_05579 at 288.636 kb on + strand, within MPMX19_05579 at 288.636 kb on + strand, within MPMX19_05579 at 288.636 kb on + strand, within MPMX19_05579 at 288.636 kb on + strand, within MPMX19_05579 at 288.636 kb on + strand, within MPMX19_05579 at 288.636 kb on + strand, within MPMX19_05579 at 288.636 kb on + strand, within MPMX19_05579 at 288.636 kb on + strand, within MPMX19_05579 at 288.636 kb on + strand, within MPMX19_05579 at 288.636 kb on + strand, within MPMX19_05579 at 288.637 kb on - strand, within MPMX19_05579 at 288.637 kb on - strand, within MPMX19_05579 at 288.637 kb on - strand, within MPMX19_05579 at 288.637 kb on - strand, within MPMX19_05579 at 288.637 kb on - strand, within MPMX19_05579 at 288.637 kb on - strand, within MPMX19_05579 at 288.637 kb on - strand, within MPMX19_05579 at 288.637 kb on - strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.645 kb on + strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.646 kb on - strand, within MPMX19_05579 at 288.678 kb on + strand, within MPMX19_05579 at 288.678 kb on + strand, within MPMX19_05579 at 288.678 kb on + strand, within MPMX19_05579 at 288.678 kb on + strand, within MPMX19_05579 at 288.678 kb on + strand, within MPMX19_05579 at 288.678 kb on + strand, within MPMX19_05579 at 288.678 kb on + strand, within MPMX19_05579 at 288.679 kb on - strand, within MPMX19_05579 at 288.679 kb on - strand, within MPMX19_05579 at 288.679 kb on - strand, within MPMX19_05579 at 288.679 kb on - strand, within MPMX19_05579 at 288.720 kb on + strand, within MPMX19_05579 at 288.720 kb on + strand, within MPMX19_05579 at 288.720 kb on + strand, within MPMX19_05579 at 288.720 kb on + strand, within MPMX19_05579 at 288.720 kb on + strand, within MPMX19_05579 at 288.721 kb on - strand, within MPMX19_05579 at 288.721 kb on - strand, within MPMX19_05579 at 288.721 kb on - strand, within MPMX19_05579 at 288.721 kb on - strand, within MPMX19_05579 at 289.035 kb on + strand, within MPMX19_05579 at 289.035 kb on + strand, within MPMX19_05579 at 289.035 kb on + strand, within MPMX19_05579
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 286,361 + -1.0 286,476 + -0.3 286,476 + -0.4 286,521 + -0.7 286,521 + -0.0 286,521 + -0.3 286,521 + +0.9 286,521 + +0.3 286,521 + -0.7 286,521 + -0.9 286,521 + +1.8 286,521 + -1.7 286,521 + -0.8 286,521 + +0.3 286,521 + +0.2 286,522 - -0.3 286,522 - +0.8 286,522 - +0.1 286,522 - +0.3 286,522 - -0.6 286,522 - -0.0 286,522 - +0.8 286,522 - +0.1 286,522 - -0.2 286,522 - -0.2 286,522 - -1.7 286,522 - -0.3 286,522 - -1.6 286,522 - -0.8 286,522 - -0.3 286,522 - -1.1 286,522 - +0.7 286,522 - +0.3 286,522 - -0.6 286,534 + -1.7 286,534 + +1.2 286,534 + -0.6 286,534 + -1.0 286,535 - -0.6 286,535 - -0.8 286,535 - +0.5 286,535 - -1.2 286,535 - -0.4 286,535 - -1.7 286,535 - +0.5 286,535 - +0.8 286,535 - -0.2 286,535 - -0.5 286,535 - -1.1 286,535 - -0.8 286,535 - +0.8 287,311 + -0.6 287,311 + -0.0 287,311 + -0.6 287,311 + -2.1 287,311 + -0.9 287,311 + +0.1 287,311 + -1.7 287,311 + -0.2 287,311 + +0.0 287,311 + -1.1 287,311 + +0.0 287,311 + -0.4 287,567 + MPMX19_05578 0.33 +0.9 287,567 + MPMX19_05578 0.33 -1.0 287,567 + MPMX19_05578 0.33 -0.2 287,567 + MPMX19_05578 0.33 +0.9 287,567 + MPMX19_05578 0.33 -0.3 287,567 + MPMX19_05578 0.33 +0.1 287,567 + MPMX19_05578 0.33 +0.4 287,567 + MPMX19_05578 0.33 +1.1 287,567 + MPMX19_05578 0.33 -0.7 287,567 + MPMX19_05578 0.33 +0.5 287,567 + MPMX19_05578 0.33 -0.6 287,567 + MPMX19_05578 0.33 +0.2 287,567 + MPMX19_05578 0.33 +0.2 287,567 + MPMX19_05578 0.33 -0.4 287,568 - MPMX19_05578 0.34 +1.2 287,568 - MPMX19_05578 0.34 +0.5 287,568 - MPMX19_05578 0.34 -1.1 287,568 - MPMX19_05578 0.34 -0.5 287,568 - MPMX19_05578 0.34 -0.3 287,568 - MPMX19_05578 0.34 -0.8 287,568 - MPMX19_05578 0.34 -0.6 287,568 - MPMX19_05578 0.34 -0.3 287,568 - MPMX19_05578 0.34 -1.7 287,568 - MPMX19_05578 0.34 -0.2 287,593 - MPMX19_05578 0.37 +0.8 287,593 - MPMX19_05578 0.37 -0.0 287,593 - MPMX19_05578 0.37 -0.2 287,593 - MPMX19_05578 0.37 +0.4 287,593 - MPMX19_05578 0.37 +1.2 287,593 - MPMX19_05578 0.37 +0.5 287,593 - MPMX19_05578 0.37 +1.0 287,593 - MPMX19_05578 0.37 -1.2 287,593 - MPMX19_05578 0.37 +2.4 287,593 - MPMX19_05578 0.37 -0.8 287,593 - MPMX19_05578 0.37 +0.0 287,593 - MPMX19_05578 0.37 -0.2 287,593 - MPMX19_05578 0.37 -0.4 287,593 - MPMX19_05578 0.37 +0.4 288,033 + -0.6 288,033 + -0.9 288,033 + +0.3 288,033 + -0.9 288,033 + -2.6 288,033 + -1.1 288,033 + +1.2 288,033 + -0.9 288,033 + +1.0 288,045 + -0.9 288,045 + +0.1 288,045 + +1.3 288,045 + -1.4 288,045 + -0.3 288,172 + -1.0 288,173 - +0.2 288,173 - -1.4 288,173 - +0.8 288,321 + MPMX19_05579 0.10 -0.3 288,321 + MPMX19_05579 0.10 -0.6 288,321 + MPMX19_05579 0.10 -1.8 288,321 + MPMX19_05579 0.10 +0.5 288,321 + MPMX19_05579 0.10 -0.0 288,321 + MPMX19_05579 0.10 +0.0 288,321 + MPMX19_05579 0.10 +0.0 288,321 + MPMX19_05579 0.10 -0.0 288,321 + MPMX19_05579 0.10 -1.0 288,321 + MPMX19_05579 0.10 +0.7 288,321 + MPMX19_05579 0.10 -0.8 288,322 - MPMX19_05579 0.10 -1.0 288,322 - MPMX19_05579 0.10 +0.4 288,322 - MPMX19_05579 0.10 +0.0 288,322 - MPMX19_05579 0.10 -0.2 288,322 - MPMX19_05579 0.10 +1.8 288,322 - MPMX19_05579 0.10 -0.6 288,322 - MPMX19_05579 0.10 -0.8 288,322 - MPMX19_05579 0.10 -1.9 288,322 - MPMX19_05579 0.10 +0.2 288,618 + MPMX19_05579 0.35 -0.2 288,618 + MPMX19_05579 0.35 +1.1 288,636 + MPMX19_05579 0.36 +0.4 288,636 + MPMX19_05579 0.36 +1.6 288,636 + MPMX19_05579 0.36 -0.8 288,636 + MPMX19_05579 0.36 -0.8 288,636 + MPMX19_05579 0.36 -0.7 288,636 + MPMX19_05579 0.36 -2.0 288,636 + MPMX19_05579 0.36 -0.5 288,636 + MPMX19_05579 0.36 +0.8 288,636 + MPMX19_05579 0.36 -1.4 288,636 + MPMX19_05579 0.36 -0.6 288,636 + MPMX19_05579 0.36 -1.0 288,637 - MPMX19_05579 0.36 +0.4 288,637 - MPMX19_05579 0.36 +0.2 288,637 - MPMX19_05579 0.36 +0.2 288,637 - MPMX19_05579 0.36 -1.0 288,637 - MPMX19_05579 0.36 +0.3 288,637 - MPMX19_05579 0.36 +0.9 288,637 - MPMX19_05579 0.36 +0.1 288,637 - MPMX19_05579 0.36 +1.0 288,645 + MPMX19_05579 0.37 +0.9 288,645 + MPMX19_05579 0.37 -0.3 288,645 + MPMX19_05579 0.37 -1.6 288,645 + MPMX19_05579 0.37 +1.5 288,645 + MPMX19_05579 0.37 +0.4 288,645 + MPMX19_05579 0.37 -1.4 288,645 + MPMX19_05579 0.37 -2.1 288,645 + MPMX19_05579 0.37 -1.0 288,645 + MPMX19_05579 0.37 -1.0 288,645 + MPMX19_05579 0.37 -0.8 288,645 + MPMX19_05579 0.37 +0.4 288,645 + MPMX19_05579 0.37 -0.6 288,645 + MPMX19_05579 0.37 -0.4 288,645 + MPMX19_05579 0.37 -0.2 288,645 + MPMX19_05579 0.37 -0.8 288,645 + MPMX19_05579 0.37 +1.8 288,645 + MPMX19_05579 0.37 +0.5 288,645 + MPMX19_05579 0.37 +0.7 288,645 + MPMX19_05579 0.37 +2.0 288,645 + MPMX19_05579 0.37 +0.2 288,645 + MPMX19_05579 0.37 -1.5 288,645 + MPMX19_05579 0.37 -0.1 288,645 + MPMX19_05579 0.37 -0.4 288,645 + MPMX19_05579 0.37 +0.2 288,645 + MPMX19_05579 0.37 -1.2 288,645 + MPMX19_05579 0.37 -1.6 288,645 + MPMX19_05579 0.37 -0.7 288,645 + MPMX19_05579 0.37 +0.0 288,646 - MPMX19_05579 0.37 -0.3 288,646 - MPMX19_05579 0.37 -1.2 288,646 - MPMX19_05579 0.37 -1.6 288,646 - MPMX19_05579 0.37 -0.7 288,646 - MPMX19_05579 0.37 +0.2 288,646 - MPMX19_05579 0.37 +0.8 288,646 - MPMX19_05579 0.37 -0.5 288,646 - MPMX19_05579 0.37 +0.9 288,646 - MPMX19_05579 0.37 -0.9 288,646 - MPMX19_05579 0.37 -1.2 288,646 - MPMX19_05579 0.37 +0.8 288,646 - MPMX19_05579 0.37 -1.4 288,646 - MPMX19_05579 0.37 -0.6 288,646 - MPMX19_05579 0.37 +0.1 288,646 - MPMX19_05579 0.37 -0.4 288,646 - MPMX19_05579 0.37 -1.3 288,678 + MPMX19_05579 0.40 +0.2 288,678 + MPMX19_05579 0.40 +0.9 288,678 + MPMX19_05579 0.40 +0.1 288,678 + MPMX19_05579 0.40 -0.6 288,678 + MPMX19_05579 0.40 -1.7 288,678 + MPMX19_05579 0.40 -0.1 288,678 + MPMX19_05579 0.40 -0.3 288,679 - MPMX19_05579 0.40 -0.4 288,679 - MPMX19_05579 0.40 -1.6 288,679 - MPMX19_05579 0.40 -0.6 288,679 - MPMX19_05579 0.40 -0.6 288,720 + MPMX19_05579 0.43 -0.3 288,720 + MPMX19_05579 0.43 -0.2 288,720 + MPMX19_05579 0.43 +1.1 288,720 + MPMX19_05579 0.43 -0.2 288,720 + MPMX19_05579 0.43 +0.0 288,721 - MPMX19_05579 0.43 +1.3 288,721 - MPMX19_05579 0.43 +0.5 288,721 - MPMX19_05579 0.43 +0.2 288,721 - MPMX19_05579 0.43 -0.1 289,035 + MPMX19_05579 0.69 -1.7 289,035 + MPMX19_05579 0.69 -0.3 289,035 + MPMX19_05579 0.69 -0.1
Or see this region's nucleotide sequence