Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05394 and MPMX19_05395 are separated by 186 nucleotides MPMX19_05395 and MPMX19_05396 overlap by 8 nucleotides MPMX19_05396 and MPMX19_05397 overlap by 14 nucleotides MPMX19_05397 and MPMX19_05398 are separated by 49 nucleotides
MPMX19_05394: MPMX19_05394 - L-cystine-binding protein FliY, at 73,335 to 74,138
_05394
MPMX19_05395: MPMX19_05395 - L-cystine transport system permease protein TcyB, at 74,325 to 74,999
_05395
MPMX19_05396: MPMX19_05396 - L-cystine transport system permease protein YecS, at 74,992 to 75,642
_05396
MPMX19_05397: MPMX19_05397 - Glutamine transport ATP-binding protein GlnQ, at 75,629 to 76,408
_05397
MPMX19_05398: MPMX19_05398 - HTH-type transcriptional regulatory protein GabR, at 76,458 to 77,972
_05398
Position (kb) 74
75
76 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.141 kb on + strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.142 kb on - strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.331 kb on + strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.332 kb on - strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.361 kb on + strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.362 kb on - strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.363 kb on + strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.364 kb on - strand at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.502 kb on + strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.503 kb on - strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.578 kb on + strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.579 kb on - strand, within MPMX19_05395 at 74.634 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.733 kb on + strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.734 kb on - strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.895 kb on + strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.896 kb on - strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.916 kb on + strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395 at 74.917 kb on - strand, within MPMX19_05395 at 75.289 kb on + strand, within MPMX19_05396 at 75.289 kb on + strand, within MPMX19_05396 at 75.289 kb on + strand, within MPMX19_05396 at 75.289 kb on + strand, within MPMX19_05396 at 75.290 kb on - strand, within MPMX19_05396 at 75.290 kb on - strand, within MPMX19_05396 at 75.290 kb on - strand, within MPMX19_05396 at 75.290 kb on - strand, within MPMX19_05396 at 75.290 kb on - strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.550 kb on + strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.551 kb on - strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.571 kb on + strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.572 kb on - strand, within MPMX19_05396 at 75.586 kb on + strand at 75.587 kb on - strand at 75.587 kb on - strand at 75.641 kb on - strand at 76.076 kb on + strand, within MPMX19_05397 at 76.077 kb on - strand, within MPMX19_05397 at 76.531 kb on + strand at 76.531 kb on + strand at 76.532 kb on - strand at 76.600 kb on + strand at 76.600 kb on + strand at 76.600 kb on + strand at 76.600 kb on + strand at 76.600 kb on + strand at 76.600 kb on + strand at 76.601 kb on - strand at 76.601 kb on - strand at 76.601 kb on - strand at 76.601 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 74,141 + -0.3 74,141 + -0.5 74,141 + -1.3 74,141 + +0.1 74,141 + -0.4 74,141 + +0.1 74,141 + +0.5 74,141 + -2.0 74,141 + -0.0 74,141 + -0.0 74,141 + -0.7 74,141 + -1.8 74,141 + +0.9 74,141 + +0.3 74,141 + -1.7 74,141 + -1.8 74,141 + -0.5 74,141 + -1.1 74,141 + +0.4 74,142 - -0.9 74,142 - -1.3 74,142 - -0.9 74,142 - -1.4 74,142 - -1.0 74,142 - -0.8 74,142 - -2.7 74,142 - -0.4 74,142 - +0.9 74,142 - -0.2 74,142 - +0.5 74,142 - +0.3 74,142 - -2.0 74,142 - -1.9 74,142 - +0.2 74,142 - -1.2 74,142 - +0.2 74,142 - +0.9 74,142 - -1.1 74,142 - -0.5 74,331 + -0.2 74,331 + -0.7 74,331 + -0.3 74,331 + +0.8 74,331 + -1.2 74,331 + -1.6 74,332 - -1.6 74,332 - -1.5 74,332 - -0.1 74,332 - +0.2 74,361 + +0.8 74,361 + +1.5 74,361 + +1.1 74,361 + -0.2 74,361 + +1.3 74,362 - -0.5 74,362 - -1.9 74,362 - +0.1 74,362 - -1.0 74,362 - -0.3 74,363 + +1.0 74,363 + -0.4 74,363 + -1.1 74,363 + -0.8 74,363 + -1.1 74,363 + +0.7 74,363 + -2.2 74,363 + +0.3 74,363 + -0.7 74,363 + -1.4 74,364 - -0.6 74,364 - -1.2 74,364 - +0.2 74,364 - -0.1 74,364 - -0.8 74,364 - -0.3 74,364 - -1.1 74,364 - -1.7 74,364 - +0.1 74,364 - +0.0 74,364 - -0.5 74,364 - +0.2 74,364 - +0.9 74,364 - -0.9 74,364 - -1.9 74,364 - -0.1 74,364 - -0.1 74,364 - -0.8 74,502 + MPMX19_05395 0.26 +0.6 74,502 + MPMX19_05395 0.26 +0.6 74,502 + MPMX19_05395 0.26 -0.5 74,502 + MPMX19_05395 0.26 -3.0 74,502 + MPMX19_05395 0.26 +0.3 74,502 + MPMX19_05395 0.26 +0.8 74,502 + MPMX19_05395 0.26 -0.2 74,502 + MPMX19_05395 0.26 +1.4 74,502 + MPMX19_05395 0.26 -0.6 74,502 + MPMX19_05395 0.26 -1.7 74,502 + MPMX19_05395 0.26 +0.1 74,502 + MPMX19_05395 0.26 +0.4 74,503 - MPMX19_05395 0.26 -0.7 74,503 - MPMX19_05395 0.26 -1.7 74,503 - MPMX19_05395 0.26 +0.4 74,503 - MPMX19_05395 0.26 -1.0 74,503 - MPMX19_05395 0.26 -1.5 74,503 - MPMX19_05395 0.26 +0.7 74,503 - MPMX19_05395 0.26 -1.4 74,503 - MPMX19_05395 0.26 -0.1 74,503 - MPMX19_05395 0.26 -0.8 74,503 - MPMX19_05395 0.26 -0.0 74,503 - MPMX19_05395 0.26 +0.8 74,578 + MPMX19_05395 0.37 -0.2 74,578 + MPMX19_05395 0.37 -2.5 74,578 + MPMX19_05395 0.37 +1.3 74,578 + MPMX19_05395 0.37 +0.7 74,578 + MPMX19_05395 0.37 +0.7 74,578 + MPMX19_05395 0.37 -0.5 74,578 + MPMX19_05395 0.37 -1.8 74,579 - MPMX19_05395 0.38 -0.3 74,579 - MPMX19_05395 0.38 +0.1 74,579 - MPMX19_05395 0.38 +0.2 74,579 - MPMX19_05395 0.38 -2.9 74,579 - MPMX19_05395 0.38 -1.5 74,634 + MPMX19_05395 0.46 +1.0 74,733 + MPMX19_05395 0.60 -0.7 74,733 + MPMX19_05395 0.60 -1.0 74,733 + MPMX19_05395 0.60 -0.8 74,733 + MPMX19_05395 0.60 -0.2 74,733 + MPMX19_05395 0.60 -1.7 74,733 + MPMX19_05395 0.60 +0.3 74,734 - MPMX19_05395 0.61 -1.0 74,734 - MPMX19_05395 0.61 +1.2 74,734 - MPMX19_05395 0.61 -1.0 74,734 - MPMX19_05395 0.61 -0.1 74,734 - MPMX19_05395 0.61 +0.6 74,734 - MPMX19_05395 0.61 +0.5 74,734 - MPMX19_05395 0.61 -0.4 74,895 + MPMX19_05395 0.84 -1.5 74,895 + MPMX19_05395 0.84 -1.5 74,895 + MPMX19_05395 0.84 +0.8 74,895 + MPMX19_05395 0.84 +0.2 74,896 - MPMX19_05395 0.85 -0.4 74,896 - MPMX19_05395 0.85 -0.3 74,896 - MPMX19_05395 0.85 +0.6 74,896 - MPMX19_05395 0.85 +1.4 74,896 - MPMX19_05395 0.85 -0.1 74,896 - MPMX19_05395 0.85 -0.6 74,896 - MPMX19_05395 0.85 -1.8 74,916 + MPMX19_05395 0.88 -1.0 74,916 + MPMX19_05395 0.88 -0.5 74,916 + MPMX19_05395 0.88 -2.7 74,916 + MPMX19_05395 0.88 +0.8 74,916 + MPMX19_05395 0.88 +1.1 74,917 - MPMX19_05395 0.88 -0.7 74,917 - MPMX19_05395 0.88 -1.4 74,917 - MPMX19_05395 0.88 -0.9 75,289 + MPMX19_05396 0.46 +1.1 75,289 + MPMX19_05396 0.46 -1.1 75,289 + MPMX19_05396 0.46 -1.7 75,289 + MPMX19_05396 0.46 -0.8 75,290 - MPMX19_05396 0.46 -1.2 75,290 - MPMX19_05396 0.46 -0.3 75,290 - MPMX19_05396 0.46 -1.6 75,290 - MPMX19_05396 0.46 -0.3 75,290 - MPMX19_05396 0.46 -1.0 75,550 + MPMX19_05396 0.86 -1.2 75,550 + MPMX19_05396 0.86 +0.7 75,550 + MPMX19_05396 0.86 +0.8 75,550 + MPMX19_05396 0.86 -1.1 75,550 + MPMX19_05396 0.86 -1.5 75,550 + MPMX19_05396 0.86 -1.0 75,551 - MPMX19_05396 0.86 +0.2 75,551 - MPMX19_05396 0.86 +0.3 75,551 - MPMX19_05396 0.86 +1.4 75,551 - MPMX19_05396 0.86 +0.3 75,551 - MPMX19_05396 0.86 -0.8 75,551 - MPMX19_05396 0.86 -2.9 75,571 + MPMX19_05396 0.89 +0.1 75,571 + MPMX19_05396 0.89 -0.0 75,571 + MPMX19_05396 0.89 -1.1 75,571 + MPMX19_05396 0.89 +0.4 75,571 + MPMX19_05396 0.89 +0.4 75,571 + MPMX19_05396 0.89 +0.8 75,571 + MPMX19_05396 0.89 -0.2 75,571 + MPMX19_05396 0.89 -0.1 75,572 - MPMX19_05396 0.89 +1.8 75,572 - MPMX19_05396 0.89 +0.6 75,572 - MPMX19_05396 0.89 -0.9 75,572 - MPMX19_05396 0.89 -0.2 75,572 - MPMX19_05396 0.89 +0.2 75,572 - MPMX19_05396 0.89 -1.7 75,586 + +0.1 75,587 - -1.9 75,587 - -0.8 75,641 - -0.0 76,076 + MPMX19_05397 0.57 -0.3 76,077 - MPMX19_05397 0.57 -0.5 76,531 + -1.7 76,531 + -1.9 76,532 - -1.0 76,600 + +0.4 76,600 + -1.8 76,600 + -0.7 76,600 + +1.1 76,600 + -0.1 76,600 + +0.3 76,601 - -1.1 76,601 - -0.4 76,601 - -1.1 76,601 - -2.3
Or see this region's nucleotide sequence