Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05230 and MPMX19_05231 are separated by 272 nucleotides MPMX19_05231 and MPMX19_05232 are separated by 32 nucleotides
MPMX19_05230: MPMX19_05230 - putative MFS-type transporter YcaD, at 755,763 to 757,001
_05230
MPMX19_05231: MPMX19_05231 - 1,2-epoxyphenylacetyl-CoA isomerase, at 757,274 to 758,089
_05231
MPMX19_05232: MPMX19_05232 - Beta-ketothiolase BktB, at 758,122 to 759,303
_05232
Position (kb) 757
758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 756.349 kb on + strand, within MPMX19_05230 at 756.349 kb on + strand, within MPMX19_05230 at 756.349 kb on + strand, within MPMX19_05230 at 756.350 kb on - strand, within MPMX19_05230 at 756.350 kb on - strand, within MPMX19_05230 at 756.350 kb on - strand, within MPMX19_05230 at 756.583 kb on + strand, within MPMX19_05230 at 756.583 kb on + strand, within MPMX19_05230 at 756.584 kb on - strand, within MPMX19_05230 at 756.584 kb on - strand, within MPMX19_05230 at 756.584 kb on - strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.598 kb on + strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.599 kb on - strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on + strand, within MPMX19_05230 at 756.667 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.668 kb on - strand, within MPMX19_05230 at 756.791 kb on + strand, within MPMX19_05230 at 756.792 kb on - strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.823 kb on + strand, within MPMX19_05230 at 756.824 kb on - strand, within MPMX19_05230 at 756.850 kb on + strand, within MPMX19_05230 at 756.850 kb on + strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.851 kb on - strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.853 kb on + strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 756.854 kb on - strand, within MPMX19_05230 at 757.184 kb on - strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.238 kb on + strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.239 kb on - strand at 757.253 kb on - strand at 757.582 kb on - strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.706 kb on + strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.707 kb on - strand, within MPMX19_05231 at 757.925 kb on + strand, within MPMX19_05231 at 757.926 kb on - strand, within MPMX19_05231 at 758.097 kb on + strand at 758.097 kb on + strand at 758.097 kb on + strand at 758.097 kb on + strand at 758.097 kb on + strand at 758.097 kb on + strand at 758.097 kb on + strand at 758.098 kb on - strand at 758.098 kb on - strand at 758.098 kb on - strand at 758.098 kb on - strand at 758.098 kb on - strand at 758.317 kb on + strand, within MPMX19_05232 at 758.317 kb on + strand, within MPMX19_05232 at 758.317 kb on + strand, within MPMX19_05232 at 758.317 kb on + strand, within MPMX19_05232 at 758.317 kb on + strand, within MPMX19_05232 at 758.317 kb on + strand, within MPMX19_05232 at 758.317 kb on + strand, within MPMX19_05232 at 758.317 kb on + strand, within MPMX19_05232 at 758.317 kb on + strand, within MPMX19_05232 at 758.318 kb on - strand, within MPMX19_05232 at 758.318 kb on - strand, within MPMX19_05232 at 758.318 kb on - strand, within MPMX19_05232 at 758.378 kb on + strand, within MPMX19_05232 at 758.378 kb on + strand, within MPMX19_05232 at 758.378 kb on + strand, within MPMX19_05232 at 758.378 kb on + strand, within MPMX19_05232 at 758.378 kb on + strand, within MPMX19_05232 at 758.378 kb on + strand, within MPMX19_05232 at 758.378 kb on + strand, within MPMX19_05232 at 758.378 kb on + strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.379 kb on - strand, within MPMX19_05232 at 758.494 kb on + strand, within MPMX19_05232 at 758.494 kb on + strand, within MPMX19_05232 at 758.494 kb on + strand, within MPMX19_05232 at 758.494 kb on + strand, within MPMX19_05232 at 758.494 kb on + strand, within MPMX19_05232 at 758.494 kb on + strand, within MPMX19_05232 at 758.495 kb on - strand, within MPMX19_05232 at 758.495 kb on - strand, within MPMX19_05232 at 758.551 kb on + strand, within MPMX19_05232 at 758.551 kb on + strand, within MPMX19_05232 at 758.551 kb on + strand, within MPMX19_05232 at 758.552 kb on - strand, within MPMX19_05232 at 758.552 kb on - strand, within MPMX19_05232 at 758.552 kb on - strand, within MPMX19_05232 at 758.552 kb on - strand, within MPMX19_05232 at 758.552 kb on - strand, within MPMX19_05232 at 758.552 kb on - strand, within MPMX19_05232 at 758.552 kb on - strand, within MPMX19_05232 at 758.552 kb on - strand, within MPMX19_05232 at 758.552 kb on - strand, within MPMX19_05232 at 758.627 kb on - strand, within MPMX19_05232 at 758.957 kb on - strand, within MPMX19_05232 at 758.983 kb on + strand, within MPMX19_05232 at 758.983 kb on + strand, within MPMX19_05232 at 758.983 kb on + strand, within MPMX19_05232 at 758.983 kb on + strand, within MPMX19_05232 at 758.983 kb on + strand, within MPMX19_05232 at 758.983 kb on + strand, within MPMX19_05232 at 758.983 kb on + strand, within MPMX19_05232 at 758.983 kb on + strand, within MPMX19_05232 at 758.983 kb on + strand, within MPMX19_05232 at 758.984 kb on - strand, within MPMX19_05232 at 758.984 kb on - strand, within MPMX19_05232 at 758.984 kb on - strand, within MPMX19_05232 at 758.984 kb on - strand, within MPMX19_05232 at 758.984 kb on - strand, within MPMX19_05232 at 758.984 kb on - strand, within MPMX19_05232 at 758.984 kb on - strand, within MPMX19_05232 at 758.984 kb on - strand, within MPMX19_05232 at 758.984 kb on - strand, within MPMX19_05232 at 758.984 kb on - strand, within MPMX19_05232
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 756,349 + MPMX19_05230 0.47 +0.4 756,349 + MPMX19_05230 0.47 -0.9 756,349 + MPMX19_05230 0.47 -0.4 756,350 - MPMX19_05230 0.47 -1.0 756,350 - MPMX19_05230 0.47 +0.1 756,350 - MPMX19_05230 0.47 -0.7 756,583 + MPMX19_05230 0.66 +0.2 756,583 + MPMX19_05230 0.66 -1.5 756,584 - MPMX19_05230 0.66 -1.7 756,584 - MPMX19_05230 0.66 -0.5 756,584 - MPMX19_05230 0.66 +0.6 756,598 + MPMX19_05230 0.67 -1.5 756,598 + MPMX19_05230 0.67 -0.7 756,598 + MPMX19_05230 0.67 -0.4 756,598 + MPMX19_05230 0.67 -1.3 756,598 + MPMX19_05230 0.67 -1.0 756,598 + MPMX19_05230 0.67 +1.3 756,598 + MPMX19_05230 0.67 -1.3 756,598 + MPMX19_05230 0.67 -0.5 756,599 - MPMX19_05230 0.67 -0.5 756,599 - MPMX19_05230 0.67 -0.7 756,599 - MPMX19_05230 0.67 -2.3 756,599 - MPMX19_05230 0.67 -0.8 756,599 - MPMX19_05230 0.67 +0.8 756,599 - MPMX19_05230 0.67 -0.3 756,599 - MPMX19_05230 0.67 +1.1 756,599 - MPMX19_05230 0.67 -1.0 756,599 - MPMX19_05230 0.67 +0.4 756,599 - MPMX19_05230 0.67 +1.0 756,667 + MPMX19_05230 0.73 -1.4 756,667 + MPMX19_05230 0.73 -0.3 756,667 + MPMX19_05230 0.73 -0.3 756,667 + MPMX19_05230 0.73 +0.1 756,667 + MPMX19_05230 0.73 -0.4 756,667 + MPMX19_05230 0.73 -0.3 756,667 + MPMX19_05230 0.73 +0.5 756,667 + MPMX19_05230 0.73 -2.5 756,667 + MPMX19_05230 0.73 -0.2 756,667 - MPMX19_05230 0.73 -1.8 756,668 - MPMX19_05230 0.73 -0.0 756,668 - MPMX19_05230 0.73 -1.0 756,668 - MPMX19_05230 0.73 +0.8 756,668 - MPMX19_05230 0.73 -1.7 756,668 - MPMX19_05230 0.73 +0.1 756,668 - MPMX19_05230 0.73 -1.4 756,668 - MPMX19_05230 0.73 -2.7 756,668 - MPMX19_05230 0.73 -0.3 756,668 - MPMX19_05230 0.73 +0.2 756,791 + MPMX19_05230 0.83 -2.4 756,792 - MPMX19_05230 0.83 -0.3 756,823 + MPMX19_05230 0.86 -0.7 756,823 + MPMX19_05230 0.86 -1.2 756,823 + MPMX19_05230 0.86 +0.1 756,823 + MPMX19_05230 0.86 -0.5 756,823 + MPMX19_05230 0.86 +0.4 756,824 - MPMX19_05230 0.86 -1.8 756,850 + MPMX19_05230 0.88 -0.3 756,850 + MPMX19_05230 0.88 -0.7 756,851 - MPMX19_05230 0.88 -0.8 756,851 - MPMX19_05230 0.88 -1.3 756,851 - MPMX19_05230 0.88 +0.4 756,851 - MPMX19_05230 0.88 +0.6 756,851 - MPMX19_05230 0.88 -0.1 756,853 + MPMX19_05230 0.88 -1.5 756,853 + MPMX19_05230 0.88 -0.7 756,853 + MPMX19_05230 0.88 +0.3 756,853 + MPMX19_05230 0.88 -0.9 756,853 + MPMX19_05230 0.88 -0.4 756,853 + MPMX19_05230 0.88 +0.3 756,853 + MPMX19_05230 0.88 +0.7 756,853 + MPMX19_05230 0.88 -1.3 756,853 + MPMX19_05230 0.88 -0.2 756,853 + MPMX19_05230 0.88 +0.6 756,853 + MPMX19_05230 0.88 +0.6 756,854 - MPMX19_05230 0.88 +1.0 756,854 - MPMX19_05230 0.88 -0.8 756,854 - MPMX19_05230 0.88 +0.4 756,854 - MPMX19_05230 0.88 -0.2 756,854 - MPMX19_05230 0.88 -0.8 756,854 - MPMX19_05230 0.88 -1.1 756,854 - MPMX19_05230 0.88 -1.0 756,854 - MPMX19_05230 0.88 -0.2 757,184 - -0.8 757,238 + -0.1 757,238 + +1.0 757,238 + -0.7 757,238 + -0.0 757,238 + +0.0 757,238 + -2.2 757,238 + +0.9 757,238 + +0.2 757,239 - -0.4 757,239 - -0.4 757,239 - -0.5 757,239 - -0.2 757,239 - +0.0 757,239 - -1.4 757,239 - +0.6 757,239 - -1.4 757,239 - -0.4 757,239 - -0.1 757,239 - -1.3 757,239 - -1.4 757,239 - -0.5 757,253 - +0.1 757,582 - MPMX19_05231 0.38 +1.4 757,706 + MPMX19_05231 0.53 -0.8 757,706 + MPMX19_05231 0.53 +0.2 757,706 + MPMX19_05231 0.53 +1.0 757,706 + MPMX19_05231 0.53 -0.2 757,706 + MPMX19_05231 0.53 -0.6 757,706 + MPMX19_05231 0.53 -1.2 757,706 + MPMX19_05231 0.53 -0.4 757,707 - MPMX19_05231 0.53 -0.1 757,707 - MPMX19_05231 0.53 +0.4 757,707 - MPMX19_05231 0.53 -1.2 757,707 - MPMX19_05231 0.53 +0.0 757,707 - MPMX19_05231 0.53 +0.6 757,707 - MPMX19_05231 0.53 -1.0 757,707 - MPMX19_05231 0.53 +0.7 757,707 - MPMX19_05231 0.53 -3.0 757,707 - MPMX19_05231 0.53 +0.2 757,707 - MPMX19_05231 0.53 +1.5 757,707 - MPMX19_05231 0.53 +1.9 757,707 - MPMX19_05231 0.53 -0.1 757,707 - MPMX19_05231 0.53 +0.8 757,707 - MPMX19_05231 0.53 +0.3 757,925 + MPMX19_05231 0.80 +0.6 757,926 - MPMX19_05231 0.80 +0.6 758,097 + -0.7 758,097 + -0.7 758,097 + -1.4 758,097 + -1.8 758,097 + -1.0 758,097 + +0.8 758,097 + +0.8 758,098 - +0.0 758,098 - -1.0 758,098 - -1.2 758,098 - -0.7 758,098 - +1.4 758,317 + MPMX19_05232 0.16 -0.2 758,317 + MPMX19_05232 0.16 +0.2 758,317 + MPMX19_05232 0.16 -0.8 758,317 + MPMX19_05232 0.16 +0.3 758,317 + MPMX19_05232 0.16 -1.7 758,317 + MPMX19_05232 0.16 -1.2 758,317 + MPMX19_05232 0.16 +1.8 758,317 + MPMX19_05232 0.16 -0.1 758,317 + MPMX19_05232 0.16 +0.0 758,318 - MPMX19_05232 0.17 -1.0 758,318 - MPMX19_05232 0.17 -0.7 758,318 - MPMX19_05232 0.17 -0.9 758,378 + MPMX19_05232 0.22 -1.7 758,378 + MPMX19_05232 0.22 +0.2 758,378 + MPMX19_05232 0.22 -1.8 758,378 + MPMX19_05232 0.22 -1.7 758,378 + MPMX19_05232 0.22 -0.6 758,378 + MPMX19_05232 0.22 +0.9 758,378 + MPMX19_05232 0.22 -0.2 758,378 + MPMX19_05232 0.22 -1.7 758,379 - MPMX19_05232 0.22 -1.0 758,379 - MPMX19_05232 0.22 -1.2 758,379 - MPMX19_05232 0.22 -0.5 758,379 - MPMX19_05232 0.22 -0.5 758,379 - MPMX19_05232 0.22 +0.3 758,379 - MPMX19_05232 0.22 -2.1 758,379 - MPMX19_05232 0.22 +0.6 758,379 - MPMX19_05232 0.22 -1.7 758,379 - MPMX19_05232 0.22 -1.2 758,379 - MPMX19_05232 0.22 -1.0 758,379 - MPMX19_05232 0.22 -0.4 758,379 - MPMX19_05232 0.22 -0.5 758,379 - MPMX19_05232 0.22 +1.0 758,494 + MPMX19_05232 0.31 -2.1 758,494 + MPMX19_05232 0.31 +1.0 758,494 + MPMX19_05232 0.31 -0.4 758,494 + MPMX19_05232 0.31 +0.1 758,494 + MPMX19_05232 0.31 -1.8 758,494 + MPMX19_05232 0.31 -0.8 758,495 - MPMX19_05232 0.32 -1.2 758,495 - MPMX19_05232 0.32 -2.2 758,551 + MPMX19_05232 0.36 -0.5 758,551 + MPMX19_05232 0.36 -0.6 758,551 + MPMX19_05232 0.36 -1.8 758,552 - MPMX19_05232 0.36 -1.8 758,552 - MPMX19_05232 0.36 -0.7 758,552 - MPMX19_05232 0.36 +0.4 758,552 - MPMX19_05232 0.36 -2.6 758,552 - MPMX19_05232 0.36 -1.1 758,552 - MPMX19_05232 0.36 -1.2 758,552 - MPMX19_05232 0.36 -0.7 758,552 - MPMX19_05232 0.36 +0.3 758,552 - MPMX19_05232 0.36 -0.2 758,627 - MPMX19_05232 0.43 +0.2 758,957 - MPMX19_05232 0.71 -1.1 758,983 + MPMX19_05232 0.73 -2.0 758,983 + MPMX19_05232 0.73 +0.4 758,983 + MPMX19_05232 0.73 -1.1 758,983 + MPMX19_05232 0.73 -1.4 758,983 + MPMX19_05232 0.73 -1.1 758,983 + MPMX19_05232 0.73 -0.1 758,983 + MPMX19_05232 0.73 -1.0 758,983 + MPMX19_05232 0.73 -1.0 758,983 + MPMX19_05232 0.73 -1.0 758,984 - MPMX19_05232 0.73 -2.6 758,984 - MPMX19_05232 0.73 +0.4 758,984 - MPMX19_05232 0.73 +0.5 758,984 - MPMX19_05232 0.73 -2.2 758,984 - MPMX19_05232 0.73 -1.5 758,984 - MPMX19_05232 0.73 -1.2 758,984 - MPMX19_05232 0.73 -2.0 758,984 - MPMX19_05232 0.73 -1.4 758,984 - MPMX19_05232 0.73 -0.4 758,984 - MPMX19_05232 0.73 -1.2
Or see this region's nucleotide sequence