Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_05183 and MPMX19_05184 are separated by 9 nucleotides MPMX19_05184 and MPMX19_05185 are separated by 9 nucleotides MPMX19_05185 and MPMX19_05186 are separated by 20 nucleotides
MPMX19_05183: MPMX19_05183 - Putative aliphatic sulfonates-binding protein, at 686,362 to 687,354
_05183
MPMX19_05184: MPMX19_05184 - (R)-phenoxypropionate/alpha-ketoglutarate- dioxygenase, at 687,364 to 688,242
_05184
MPMX19_05185: MPMX19_05185 - hypothetical protein, at 688,252 to 689,301
_05185
MPMX19_05186: MPMX19_05186 - Thiosulfate sulfurtransferase GlpE, at 689,322 to 690,953
_05186
Position (kb) 688
689
690 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 687.365 kb on + strand at 687.365 kb on + strand at 687.365 kb on + strand at 687.365 kb on + strand at 687.365 kb on + strand at 687.365 kb on + strand at 687.366 kb on - strand at 687.366 kb on - strand at 687.366 kb on - strand at 687.366 kb on - strand at 687.366 kb on - strand at 687.366 kb on - strand at 687.723 kb on - strand, within MPMX19_05184 at 687.896 kb on + strand, within MPMX19_05184 at 687.897 kb on - strand, within MPMX19_05184 at 687.897 kb on - strand, within MPMX19_05184 at 687.897 kb on - strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 687.980 kb on + strand, within MPMX19_05184 at 688.380 kb on - strand, within MPMX19_05185 at 688.451 kb on + strand, within MPMX19_05185 at 688.451 kb on + strand, within MPMX19_05185 at 688.451 kb on + strand, within MPMX19_05185 at 688.451 kb on + strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.452 kb on - strand, within MPMX19_05185 at 688.605 kb on - strand, within MPMX19_05185 at 688.605 kb on - strand, within MPMX19_05185 at 688.814 kb on + strand, within MPMX19_05185 at 688.814 kb on + strand, within MPMX19_05185 at 688.814 kb on + strand, within MPMX19_05185 at 688.815 kb on - strand, within MPMX19_05185 at 688.815 kb on - strand, within MPMX19_05185 at 688.843 kb on - strand, within MPMX19_05185 at 688.901 kb on + strand, within MPMX19_05185 at 688.901 kb on + strand, within MPMX19_05185 at 688.901 kb on + strand, within MPMX19_05185 at 688.901 kb on + strand, within MPMX19_05185 at 688.902 kb on - strand, within MPMX19_05185 at 688.960 kb on - strand, within MPMX19_05185 at 688.974 kb on + strand, within MPMX19_05185 at 689.075 kb on + strand, within MPMX19_05185 at 689.075 kb on + strand, within MPMX19_05185 at 689.075 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.147 kb on + strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.148 kb on - strand, within MPMX19_05185 at 689.159 kb on + strand, within MPMX19_05185 at 689.159 kb on + strand, within MPMX19_05185 at 689.160 kb on - strand, within MPMX19_05185 at 689.393 kb on - strand at 689.393 kb on - strand at 689.393 kb on - strand at 689.393 kb on - strand at 689.393 kb on - strand at 689.393 kb on - strand at 689.443 kb on + strand at 689.443 kb on + strand at 689.587 kb on + strand, within MPMX19_05186 at 689.588 kb on - strand, within MPMX19_05186 at 689.588 kb on - strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.683 kb on + strand, within MPMX19_05186 at 689.990 kb on - strand, within MPMX19_05186 at 689.990 kb on - strand, within MPMX19_05186 at 689.990 kb on - strand, within MPMX19_05186 at 689.990 kb on - strand, within MPMX19_05186 at 690.058 kb on + strand, within MPMX19_05186 at 690.058 kb on + strand, within MPMX19_05186 at 690.058 kb on + strand, within MPMX19_05186 at 690.058 kb on + strand, within MPMX19_05186 at 690.071 kb on + strand, within MPMX19_05186 at 690.072 kb on - strand, within MPMX19_05186 at 690.072 kb on - strand, within MPMX19_05186
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 687,365 + -1.2 687,365 + +1.4 687,365 + +0.5 687,365 + -2.2 687,365 + -0.5 687,365 + +0.9 687,366 - +0.0 687,366 - -1.1 687,366 - -0.2 687,366 - +0.8 687,366 - -1.0 687,366 - +0.6 687,723 - MPMX19_05184 0.41 -1.1 687,896 + MPMX19_05184 0.61 +0.3 687,897 - MPMX19_05184 0.61 +0.2 687,897 - MPMX19_05184 0.61 +0.6 687,897 - MPMX19_05184 0.61 +1.1 687,980 + MPMX19_05184 0.70 -0.0 687,980 + MPMX19_05184 0.70 +0.3 687,980 + MPMX19_05184 0.70 -1.5 687,980 + MPMX19_05184 0.70 -0.8 687,980 + MPMX19_05184 0.70 -1.0 687,980 + MPMX19_05184 0.70 -1.4 687,980 + MPMX19_05184 0.70 +0.5 687,980 + MPMX19_05184 0.70 -0.1 687,980 + MPMX19_05184 0.70 +0.1 687,980 + MPMX19_05184 0.70 +0.0 687,980 + MPMX19_05184 0.70 -1.6 687,980 + MPMX19_05184 0.70 -0.7 687,980 + MPMX19_05184 0.70 -1.0 687,980 + MPMX19_05184 0.70 -1.4 687,980 + MPMX19_05184 0.70 +0.5 688,380 - MPMX19_05185 0.12 +0.6 688,451 + MPMX19_05185 0.19 -1.7 688,451 + MPMX19_05185 0.19 -0.1 688,451 + MPMX19_05185 0.19 +0.2 688,451 + MPMX19_05185 0.19 +0.1 688,452 - MPMX19_05185 0.19 -1.8 688,452 - MPMX19_05185 0.19 +0.9 688,452 - MPMX19_05185 0.19 -1.6 688,452 - MPMX19_05185 0.19 +0.5 688,452 - MPMX19_05185 0.19 +0.0 688,452 - MPMX19_05185 0.19 +0.3 688,452 - MPMX19_05185 0.19 +1.4 688,605 - MPMX19_05185 0.34 -1.7 688,605 - MPMX19_05185 0.34 -0.4 688,814 + MPMX19_05185 0.54 -1.6 688,814 + MPMX19_05185 0.54 +0.5 688,814 + MPMX19_05185 0.54 +0.3 688,815 - MPMX19_05185 0.54 +1.1 688,815 - MPMX19_05185 0.54 +0.1 688,843 - MPMX19_05185 0.56 -1.0 688,901 + MPMX19_05185 0.62 -3.0 688,901 + MPMX19_05185 0.62 -0.2 688,901 + MPMX19_05185 0.62 +0.0 688,901 + MPMX19_05185 0.62 -0.8 688,902 - MPMX19_05185 0.62 +2.2 688,960 - MPMX19_05185 0.67 +1.4 688,974 + MPMX19_05185 0.69 +0.5 689,075 + MPMX19_05185 0.78 -0.4 689,075 + MPMX19_05185 0.78 +0.4 689,075 + MPMX19_05185 0.78 -1.0 689,147 + MPMX19_05185 0.85 +0.9 689,147 + MPMX19_05185 0.85 -0.5 689,147 + MPMX19_05185 0.85 +1.3 689,147 + MPMX19_05185 0.85 -0.1 689,147 + MPMX19_05185 0.85 +0.0 689,147 + MPMX19_05185 0.85 +0.5 689,147 + MPMX19_05185 0.85 -0.5 689,147 + MPMX19_05185 0.85 +0.3 689,148 - MPMX19_05185 0.85 -0.4 689,148 - MPMX19_05185 0.85 +0.3 689,148 - MPMX19_05185 0.85 +0.3 689,148 - MPMX19_05185 0.85 +0.5 689,148 - MPMX19_05185 0.85 +0.2 689,148 - MPMX19_05185 0.85 -0.1 689,148 - MPMX19_05185 0.85 +0.6 689,148 - MPMX19_05185 0.85 -2.7 689,148 - MPMX19_05185 0.85 +0.8 689,148 - MPMX19_05185 0.85 -1.7 689,159 + MPMX19_05185 0.86 +0.5 689,159 + MPMX19_05185 0.86 +0.6 689,160 - MPMX19_05185 0.86 -0.1 689,393 - -0.7 689,393 - +1.0 689,393 - +0.6 689,393 - +0.3 689,393 - +1.9 689,393 - -2.0 689,443 + +0.2 689,443 + +1.6 689,587 + MPMX19_05186 0.16 +1.9 689,588 - MPMX19_05186 0.16 -1.7 689,588 - MPMX19_05186 0.16 +1.1 689,683 + MPMX19_05186 0.22 +1.2 689,683 + MPMX19_05186 0.22 -0.2 689,683 + MPMX19_05186 0.22 -0.4 689,683 + MPMX19_05186 0.22 -2.5 689,683 + MPMX19_05186 0.22 +0.9 689,683 + MPMX19_05186 0.22 +0.2 689,990 - MPMX19_05186 0.41 -0.8 689,990 - MPMX19_05186 0.41 -1.0 689,990 - MPMX19_05186 0.41 +0.6 689,990 - MPMX19_05186 0.41 -0.8 690,058 + MPMX19_05186 0.45 +0.5 690,058 + MPMX19_05186 0.45 +0.4 690,058 + MPMX19_05186 0.45 -2.0 690,058 + MPMX19_05186 0.45 -0.1 690,071 + MPMX19_05186 0.46 +0.0 690,072 - MPMX19_05186 0.46 -2.6 690,072 - MPMX19_05186 0.46 -0.2
Or see this region's nucleotide sequence