Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05031

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05029 and MPMX19_05030 are separated by 10 nucleotidesMPMX19_05030 and MPMX19_05031 are separated by 90 nucleotidesMPMX19_05031 and MPMX19_05032 overlap by 4 nucleotides MPMX19_05029: MPMX19_05029 - Putative xanthine dehydrogenase molybdenum-binding subunit XdhA, at 515,012 to 517,402 _05029 MPMX19_05030: MPMX19_05030 - hypothetical protein, at 517,413 to 518,276 _05030 MPMX19_05031: MPMX19_05031 - ATP synthase gamma chain, at 518,367 to 519,209 _05031 MPMX19_05032: MPMX19_05032 - ATP synthase subunit alpha, at 519,206 to 520,735 _05032 Position (kb) 518 519 520Strain fitness (log2 ratio) -2 -1 0 1 2at 517.901 kb on + strand, within MPMX19_05030at 517.901 kb on + strand, within MPMX19_05030at 517.902 kb on - strand, within MPMX19_05030at 517.956 kb on + strand, within MPMX19_05030at 517.956 kb on + strand, within MPMX19_05030at 517.957 kb on - strand, within MPMX19_05030at 517.957 kb on - strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.031 kb on + strand, within MPMX19_05030at 518.032 kb on - strand, within MPMX19_05030at 518.032 kb on - strand, within MPMX19_05030at 518.032 kb on - strand, within MPMX19_05030at 518.032 kb on - strand, within MPMX19_05030at 518.032 kb on - strand, within MPMX19_05030at 518.285 kb on + strandat 518.285 kb on + strandat 518.285 kb on + strandat 518.285 kb on + strandat 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.566 kb on + strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.567 kb on - strand, within MPMX19_05031at 518.647 kb on - strand, within MPMX19_05031at 518.710 kb on + strand, within MPMX19_05031at 518.710 kb on + strand, within MPMX19_05031at 518.711 kb on - strand, within MPMX19_05031at 518.711 kb on - strand, within MPMX19_05031at 519.073 kb on + strand, within MPMX19_05031at 519.073 kb on + strand, within MPMX19_05031at 519.073 kb on + strand, within MPMX19_05031at 519.073 kb on + strand, within MPMX19_05031at 519.074 kb on - strand, within MPMX19_05031at 519.549 kb on + strand, within MPMX19_05032at 519.549 kb on + strand, within MPMX19_05032at 519.657 kb on + strand, within MPMX19_05032at 519.657 kb on + strand, within MPMX19_05032at 519.657 kb on + strand, within MPMX19_05032at 519.657 kb on + strand, within MPMX19_05032at 519.657 kb on + strand, within MPMX19_05032at 519.657 kb on + strand, within MPMX19_05032at 519.657 kb on + strand, within MPMX19_05032at 519.657 kb on + strand, within MPMX19_05032at 519.657 kb on + strand, within MPMX19_05032at 519.657 kb on + strand, within MPMX19_05032at 519.658 kb on - strand, within MPMX19_05032at 519.658 kb on - strand, within MPMX19_05032at 519.658 kb on - strand, within MPMX19_05032at 519.658 kb on - strand, within MPMX19_05032at 519.658 kb on - strand, within MPMX19_05032at 519.658 kb on - strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.720 kb on + strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.721 kb on - strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.831 kb on + strand, within MPMX19_05032at 519.832 kb on - strand, within MPMX19_05032at 519.832 kb on - strand, within MPMX19_05032at 519.832 kb on - strand, within MPMX19_05032at 519.832 kb on - strand, within MPMX19_05032at 519.987 kb on + strand, within MPMX19_05032at 519.987 kb on + strand, within MPMX19_05032at 519.987 kb on + strand, within MPMX19_05032at 519.988 kb on - strand, within MPMX19_05032at 519.988 kb on - strand, within MPMX19_05032at 519.988 kb on - strand, within MPMX19_05032at 519.988 kb on - strand, within MPMX19_05032at 519.988 kb on - strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.122 kb on + strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032at 520.123 kb on - strand, within MPMX19_05032

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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517,901 + MPMX19_05030 0.56 +1.2
517,901 + MPMX19_05030 0.56 -0.4
517,902 - MPMX19_05030 0.57 -0.2
517,956 + MPMX19_05030 0.63 -1.8
517,956 + MPMX19_05030 0.63 +0.2
517,957 - MPMX19_05030 0.63 +0.7
517,957 - MPMX19_05030 0.63 -1.4
518,031 + MPMX19_05030 0.72 +0.9
518,031 + MPMX19_05030 0.72 +0.2
518,031 + MPMX19_05030 0.72 +1.3
518,031 + MPMX19_05030 0.72 -1.7
518,031 + MPMX19_05030 0.72 -0.5
518,031 + MPMX19_05030 0.72 -1.1
518,031 + MPMX19_05030 0.72 +1.4
518,031 + MPMX19_05030 0.72 -0.6
518,031 + MPMX19_05030 0.72 +0.4
518,032 - MPMX19_05030 0.72 +0.5
518,032 - MPMX19_05030 0.72 -1.6
518,032 - MPMX19_05030 0.72 -1.4
518,032 - MPMX19_05030 0.72 -0.6
518,032 - MPMX19_05030 0.72 +0.7
518,285 + +0.1
518,285 + -0.3
518,285 + -1.3
518,285 + +0.3
518,566 + MPMX19_05031 0.24 +0.7
518,566 + MPMX19_05031 0.24 -0.7
518,566 + MPMX19_05031 0.24 -0.8
518,566 + MPMX19_05031 0.24 +1.3
518,566 + MPMX19_05031 0.24 -0.9
518,566 + MPMX19_05031 0.24 +1.7
518,566 + MPMX19_05031 0.24 -0.4
518,566 + MPMX19_05031 0.24 -0.1
518,566 + MPMX19_05031 0.24 +0.4
518,566 + MPMX19_05031 0.24 -1.6
518,567 - MPMX19_05031 0.24 -0.0
518,567 - MPMX19_05031 0.24 +0.6
518,567 - MPMX19_05031 0.24 +1.1
518,567 - MPMX19_05031 0.24 +0.1
518,567 - MPMX19_05031 0.24 +1.0
518,567 - MPMX19_05031 0.24 -0.4
518,567 - MPMX19_05031 0.24 -0.6
518,567 - MPMX19_05031 0.24 +0.3
518,567 - MPMX19_05031 0.24 +1.3
518,567 - MPMX19_05031 0.24 -1.4
518,567 - MPMX19_05031 0.24 +0.5
518,567 - MPMX19_05031 0.24 -0.1
518,647 - MPMX19_05031 0.33 -0.7
518,710 + MPMX19_05031 0.41 +0.4
518,710 + MPMX19_05031 0.41 +1.2
518,711 - MPMX19_05031 0.41 -0.5
518,711 - MPMX19_05031 0.41 -1.5
519,073 + MPMX19_05031 0.84 -0.3
519,073 + MPMX19_05031 0.84 -1.8
519,073 + MPMX19_05031 0.84 +0.6
519,073 + MPMX19_05031 0.84 +0.0
519,074 - MPMX19_05031 0.84 -0.5
519,549 + MPMX19_05032 0.22 -0.3
519,549 + MPMX19_05032 0.22 +0.4
519,657 + MPMX19_05032 0.29 -0.1
519,657 + MPMX19_05032 0.29 -1.5
519,657 + MPMX19_05032 0.29 -1.6
519,657 + MPMX19_05032 0.29 -0.2
519,657 + MPMX19_05032 0.29 +0.5
519,657 + MPMX19_05032 0.29 -0.6
519,657 + MPMX19_05032 0.29 -1.1
519,657 + MPMX19_05032 0.29 -0.2
519,657 + MPMX19_05032 0.29 -1.3
519,657 + MPMX19_05032 0.29 +0.1
519,658 - MPMX19_05032 0.30 +2.2
519,658 - MPMX19_05032 0.30 -1.1
519,658 - MPMX19_05032 0.30 -0.4
519,658 - MPMX19_05032 0.30 +0.4
519,658 - MPMX19_05032 0.30 +0.7
519,658 - MPMX19_05032 0.30 -0.3
519,720 + MPMX19_05032 0.34 -0.2
519,720 + MPMX19_05032 0.34 -0.5
519,720 + MPMX19_05032 0.34 +0.6
519,720 + MPMX19_05032 0.34 -0.9
519,720 + MPMX19_05032 0.34 -1.6
519,720 + MPMX19_05032 0.34 +0.2
519,720 + MPMX19_05032 0.34 -0.3
519,720 + MPMX19_05032 0.34 +0.5
519,721 - MPMX19_05032 0.34 +1.7
519,721 - MPMX19_05032 0.34 -0.6
519,721 - MPMX19_05032 0.34 +0.5
519,721 - MPMX19_05032 0.34 +0.4
519,721 - MPMX19_05032 0.34 +2.2
519,721 - MPMX19_05032 0.34 +0.6
519,831 + MPMX19_05032 0.41 -0.5
519,831 + MPMX19_05032 0.41 -0.8
519,831 + MPMX19_05032 0.41 +1.7
519,831 + MPMX19_05032 0.41 -0.5
519,831 + MPMX19_05032 0.41 -0.8
519,831 + MPMX19_05032 0.41 -0.8
519,832 - MPMX19_05032 0.41 -1.3
519,832 - MPMX19_05032 0.41 +0.4
519,832 - MPMX19_05032 0.41 +1.3
519,832 - MPMX19_05032 0.41 -1.3
519,987 + MPMX19_05032 0.51 -0.3
519,987 + MPMX19_05032 0.51 -1.6
519,987 + MPMX19_05032 0.51 -1.3
519,988 - MPMX19_05032 0.51 -0.3
519,988 - MPMX19_05032 0.51 +1.2
519,988 - MPMX19_05032 0.51 -0.4
519,988 - MPMX19_05032 0.51 -1.1
519,988 - MPMX19_05032 0.51 -1.3
520,122 + MPMX19_05032 0.60 -1.6
520,122 + MPMX19_05032 0.60 +1.4
520,122 + MPMX19_05032 0.60 -2.5
520,122 + MPMX19_05032 0.60 -1.6
520,122 + MPMX19_05032 0.60 +0.1
520,122 + MPMX19_05032 0.60 +0.3
520,122 + MPMX19_05032 0.60 -1.8
520,122 + MPMX19_05032 0.60 -2.7
520,123 - MPMX19_05032 0.60 -0.4
520,123 - MPMX19_05032 0.60 -1.3
520,123 - MPMX19_05032 0.60 -0.5
520,123 - MPMX19_05032 0.60 -1.3
520,123 - MPMX19_05032 0.60 -0.7
520,123 - MPMX19_05032 0.60 -1.1
520,123 - MPMX19_05032 0.60 +0.5

Or see this region's nucleotide sequence