Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04972 and MPMX19_04973 are separated by 37 nucleotides MPMX19_04973 and MPMX19_04974 are separated by 11 nucleotides MPMX19_04974 and MPMX19_04975 overlap by 11 nucleotides
MPMX19_04972: MPMX19_04972 - hypothetical protein, at 442,395 to 443,723
_04972
MPMX19_04973: MPMX19_04973 - hypothetical protein, at 443,761 to 444,159
_04973
MPMX19_04974: MPMX19_04974 - Nitrobenzene nitroreductase, at 444,171 to 444,872
_04974
MPMX19_04975: MPMX19_04975 - hypothetical protein, at 444,862 to 445,359
_04975
Position (kb) 443
444
445 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 442.981 kb on - strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.049 kb on + strand, within MPMX19_04972 at 443.050 kb on - strand, within MPMX19_04972 at 443.268 kb on + strand, within MPMX19_04972 at 443.268 kb on + strand, within MPMX19_04972 at 443.269 kb on - strand, within MPMX19_04972 at 443.269 kb on - strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.286 kb on + strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.287 kb on - strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.457 kb on + strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.458 kb on - strand, within MPMX19_04972 at 443.505 kb on - strand, within MPMX19_04972 at 443.505 kb on - strand, within MPMX19_04972 at 443.621 kb on + strand at 443.683 kb on + strand at 443.684 kb on - strand at 443.748 kb on + strand at 443.768 kb on + strand at 443.768 kb on + strand at 443.768 kb on + strand at 443.769 kb on - strand at 443.777 kb on + strand at 443.777 kb on + strand at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.043 kb on + strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.044 kb on - strand, within MPMX19_04973 at 444.046 kb on - strand, within MPMX19_04973 at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.157 kb on + strand at 444.158 kb on - strand at 444.158 kb on - strand at 444.158 kb on - strand at 444.329 kb on - strand, within MPMX19_04974 at 444.329 kb on - strand, within MPMX19_04974 at 444.329 kb on - strand, within MPMX19_04974 at 444.544 kb on + strand, within MPMX19_04974 at 444.545 kb on - strand, within MPMX19_04974 at 444.545 kb on - strand, within MPMX19_04974 at 444.580 kb on + strand, within MPMX19_04974 at 444.580 kb on + strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.581 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.605 kb on - strand, within MPMX19_04974 at 444.607 kb on + strand, within MPMX19_04974 at 444.607 kb on + strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.608 kb on - strand, within MPMX19_04974 at 444.613 kb on + strand, within MPMX19_04974 at 444.614 kb on - strand, within MPMX19_04974 at 444.614 kb on - strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.789 kb on + strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 444.790 kb on - strand, within MPMX19_04974 at 445.094 kb on + strand, within MPMX19_04975 at 445.095 kb on - strand, within MPMX19_04975 at 445.095 kb on - strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.136 kb on + strand, within MPMX19_04975 at 445.137 kb on - strand, within MPMX19_04975 at 445.137 kb on - strand, within MPMX19_04975
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 442,981 - MPMX19_04972 0.44 +0.5 443,049 + MPMX19_04972 0.49 -1.4 443,049 + MPMX19_04972 0.49 -0.3 443,049 + MPMX19_04972 0.49 +1.2 443,049 + MPMX19_04972 0.49 -1.8 443,050 - MPMX19_04972 0.49 +1.0 443,268 + MPMX19_04972 0.66 +0.8 443,268 + MPMX19_04972 0.66 -1.1 443,269 - MPMX19_04972 0.66 +0.7 443,269 - MPMX19_04972 0.66 -1.6 443,286 + MPMX19_04972 0.67 -0.3 443,286 + MPMX19_04972 0.67 -0.5 443,286 + MPMX19_04972 0.67 -2.6 443,286 + MPMX19_04972 0.67 -0.7 443,286 + MPMX19_04972 0.67 +0.5 443,286 + MPMX19_04972 0.67 -2.6 443,286 + MPMX19_04972 0.67 +0.9 443,287 - MPMX19_04972 0.67 -2.6 443,287 - MPMX19_04972 0.67 +0.4 443,287 - MPMX19_04972 0.67 -2.9 443,457 + MPMX19_04972 0.80 -0.9 443,457 + MPMX19_04972 0.80 -1.2 443,457 + MPMX19_04972 0.80 -0.0 443,457 + MPMX19_04972 0.80 +0.5 443,457 + MPMX19_04972 0.80 -0.5 443,458 - MPMX19_04972 0.80 -1.0 443,458 - MPMX19_04972 0.80 +0.4 443,458 - MPMX19_04972 0.80 -3.0 443,458 - MPMX19_04972 0.80 +1.4 443,458 - MPMX19_04972 0.80 +1.4 443,458 - MPMX19_04972 0.80 -0.6 443,458 - MPMX19_04972 0.80 -1.1 443,505 - MPMX19_04972 0.84 +0.2 443,505 - MPMX19_04972 0.84 -0.3 443,621 + +0.4 443,683 + +0.1 443,684 - -1.2 443,748 + +1.0 443,768 + -1.6 443,768 + -1.0 443,768 + -1.1 443,769 - +1.4 443,777 + -0.2 443,777 + -0.3 444,043 + MPMX19_04973 0.71 -0.8 444,043 + MPMX19_04973 0.71 -1.2 444,043 + MPMX19_04973 0.71 -0.5 444,043 + MPMX19_04973 0.71 -0.8 444,044 - MPMX19_04973 0.71 -0.2 444,044 - MPMX19_04973 0.71 +1.7 444,044 - MPMX19_04973 0.71 -1.1 444,044 - MPMX19_04973 0.71 -1.8 444,044 - MPMX19_04973 0.71 -1.6 444,044 - MPMX19_04973 0.71 -1.3 444,044 - MPMX19_04973 0.71 +1.1 444,044 - MPMX19_04973 0.71 -0.9 444,044 - MPMX19_04973 0.71 +0.7 444,044 - MPMX19_04973 0.71 -0.4 444,044 - MPMX19_04973 0.71 -1.0 444,046 - MPMX19_04973 0.71 +0.2 444,157 + -0.8 444,157 + -1.9 444,157 + +0.4 444,157 + -0.7 444,157 + -1.3 444,157 + -0.8 444,157 + +1.1 444,157 + -0.9 444,157 + +1.7 444,157 + +0.4 444,158 - +0.2 444,158 - -1.6 444,158 - +1.0 444,329 - MPMX19_04974 0.23 -1.0 444,329 - MPMX19_04974 0.23 +0.2 444,329 - MPMX19_04974 0.23 -1.1 444,544 + MPMX19_04974 0.53 -0.1 444,545 - MPMX19_04974 0.53 -0.3 444,545 - MPMX19_04974 0.53 -1.1 444,580 + MPMX19_04974 0.58 -0.9 444,580 + MPMX19_04974 0.58 -0.8 444,581 - MPMX19_04974 0.58 +0.7 444,581 - MPMX19_04974 0.58 -0.3 444,581 - MPMX19_04974 0.58 -0.9 444,605 - MPMX19_04974 0.62 +1.4 444,605 - MPMX19_04974 0.62 -1.0 444,605 - MPMX19_04974 0.62 -0.8 444,607 + MPMX19_04974 0.62 +1.2 444,607 + MPMX19_04974 0.62 -2.1 444,608 - MPMX19_04974 0.62 -2.6 444,608 - MPMX19_04974 0.62 +2.0 444,608 - MPMX19_04974 0.62 -1.0 444,608 - MPMX19_04974 0.62 -1.6 444,608 - MPMX19_04974 0.62 -2.3 444,608 - MPMX19_04974 0.62 +0.2 444,608 - MPMX19_04974 0.62 -0.9 444,608 - MPMX19_04974 0.62 -0.9 444,613 + MPMX19_04974 0.63 +0.7 444,614 - MPMX19_04974 0.63 +1.3 444,614 - MPMX19_04974 0.63 -0.6 444,789 + MPMX19_04974 0.88 -2.0 444,789 + MPMX19_04974 0.88 -1.6 444,789 + MPMX19_04974 0.88 -0.9 444,789 + MPMX19_04974 0.88 -2.0 444,789 + MPMX19_04974 0.88 +0.2 444,790 - MPMX19_04974 0.88 -1.4 444,790 - MPMX19_04974 0.88 -1.1 444,790 - MPMX19_04974 0.88 -0.5 445,094 + MPMX19_04975 0.47 +0.4 445,095 - MPMX19_04975 0.47 -0.4 445,095 - MPMX19_04975 0.47 -0.3 445,136 + MPMX19_04975 0.55 +1.2 445,136 + MPMX19_04975 0.55 -0.9 445,136 + MPMX19_04975 0.55 -0.3 445,137 - MPMX19_04975 0.55 -2.8 445,137 - MPMX19_04975 0.55 -0.4
Or see this region's nucleotide sequence