Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04482 and MPMX19_04483 are separated by 43 nucleotides MPMX19_04483 and MPMX19_04484 are separated by 105 nucleotides MPMX19_04484 and MPMX19_04485 are separated by 33 nucleotides
MPMX19_04482: MPMX19_04482 - HTH-type transcriptional regulator DegA, at 849,659 to 850,759
_04482
MPMX19_04483: MPMX19_04483 - N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase, at 850,803 to 851,837
_04483
MPMX19_04484: MPMX19_04484 - 2-iminobutanoate/2-iminopropanoate deaminase, at 851,943 to 852,287
_04484
MPMX19_04485: MPMX19_04485 - ABC transporter glutamine-binding protein GlnH, at 852,321 to 853,121
_04485
Position (kb) 850
851
852 Strain fitness (log2 ratio) -2
-1
0
1 at 850.101 kb on + strand, within MPMX19_04482 at 850.101 kb on + strand, within MPMX19_04482 at 850.101 kb on + strand, within MPMX19_04482 at 850.101 kb on + strand, within MPMX19_04482 at 850.101 kb on + strand, within MPMX19_04482 at 850.102 kb on - strand, within MPMX19_04482 at 850.102 kb on - strand, within MPMX19_04482 at 850.102 kb on - strand, within MPMX19_04482 at 850.102 kb on - strand, within MPMX19_04482 at 850.102 kb on - strand, within MPMX19_04482 at 850.203 kb on + strand, within MPMX19_04482 at 850.203 kb on + strand, within MPMX19_04482 at 850.203 kb on + strand, within MPMX19_04482 at 850.204 kb on - strand, within MPMX19_04482 at 850.341 kb on + strand, within MPMX19_04482 at 850.341 kb on + strand, within MPMX19_04482 at 850.341 kb on + strand, within MPMX19_04482 at 850.342 kb on - strand, within MPMX19_04482 at 850.342 kb on - strand, within MPMX19_04482 at 850.342 kb on - strand, within MPMX19_04482 at 850.342 kb on - strand, within MPMX19_04482 at 850.347 kb on + strand, within MPMX19_04482 at 850.347 kb on + strand, within MPMX19_04482 at 850.347 kb on + strand, within MPMX19_04482 at 850.347 kb on + strand, within MPMX19_04482 at 850.348 kb on - strand, within MPMX19_04482 at 850.348 kb on - strand, within MPMX19_04482 at 850.374 kb on + strand, within MPMX19_04482 at 850.374 kb on + strand, within MPMX19_04482 at 850.374 kb on + strand, within MPMX19_04482 at 850.509 kb on + strand, within MPMX19_04482 at 850.510 kb on - strand, within MPMX19_04482 at 851.044 kb on + strand, within MPMX19_04483 at 851.045 kb on - strand, within MPMX19_04483 at 851.045 kb on - strand, within MPMX19_04483 at 851.045 kb on - strand, within MPMX19_04483 at 851.045 kb on - strand, within MPMX19_04483 at 851.173 kb on + strand, within MPMX19_04483 at 851.173 kb on + strand, within MPMX19_04483 at 851.173 kb on + strand, within MPMX19_04483 at 851.173 kb on + strand, within MPMX19_04483 at 851.174 kb on - strand, within MPMX19_04483 at 851.174 kb on - strand, within MPMX19_04483 at 851.174 kb on - strand, within MPMX19_04483 at 851.174 kb on - strand, within MPMX19_04483 at 851.299 kb on + strand, within MPMX19_04483 at 851.299 kb on + strand, within MPMX19_04483 at 851.300 kb on - strand, within MPMX19_04483 at 851.300 kb on - strand, within MPMX19_04483 at 851.300 kb on - strand, within MPMX19_04483 at 851.300 kb on - strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.656 kb on + strand, within MPMX19_04483 at 851.657 kb on - strand, within MPMX19_04483 at 851.657 kb on - strand, within MPMX19_04483 at 851.740 kb on + strand at 851.741 kb on - strand at 851.741 kb on - strand at 851.741 kb on - strand at 851.741 kb on - strand at 851.743 kb on + strand at 851.744 kb on - strand at 851.744 kb on - strand at 851.744 kb on - strand at 851.744 kb on - strand at 851.821 kb on + strand at 851.822 kb on - strand at 851.822 kb on - strand at 851.944 kb on + strand at 851.944 kb on + strand at 851.944 kb on + strand at 851.945 kb on - strand at 851.945 kb on - strand at 851.945 kb on - strand at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.049 kb on + strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.050 kb on - strand, within MPMX19_04484 at 852.322 kb on + strand at 852.322 kb on + strand at 852.322 kb on + strand at 852.322 kb on + strand at 852.323 kb on - strand at 852.323 kb on - strand at 852.323 kb on - strand at 852.323 kb on - strand at 852.398 kb on - strand at 852.398 kb on - strand at 852.574 kb on + strand, within MPMX19_04485 at 852.574 kb on + strand, within MPMX19_04485 at 852.574 kb on + strand, within MPMX19_04485 at 852.574 kb on + strand, within MPMX19_04485 at 852.575 kb on - strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.733 kb on + strand, within MPMX19_04485 at 852.734 kb on - strand, within MPMX19_04485 at 852.734 kb on - strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.757 kb on + strand, within MPMX19_04485 at 852.758 kb on - strand, within MPMX19_04485 at 852.758 kb on - strand, within MPMX19_04485
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 850,101 + MPMX19_04482 0.40 -0.5 850,101 + MPMX19_04482 0.40 +0.9 850,101 + MPMX19_04482 0.40 +1.3 850,101 + MPMX19_04482 0.40 +0.2 850,101 + MPMX19_04482 0.40 +1.2 850,102 - MPMX19_04482 0.40 -1.1 850,102 - MPMX19_04482 0.40 +0.7 850,102 - MPMX19_04482 0.40 -0.5 850,102 - MPMX19_04482 0.40 -0.4 850,102 - MPMX19_04482 0.40 +0.2 850,203 + MPMX19_04482 0.49 -1.6 850,203 + MPMX19_04482 0.49 -1.1 850,203 + MPMX19_04482 0.49 +0.5 850,204 - MPMX19_04482 0.50 +0.3 850,341 + MPMX19_04482 0.62 -0.3 850,341 + MPMX19_04482 0.62 -0.6 850,341 + MPMX19_04482 0.62 -1.4 850,342 - MPMX19_04482 0.62 +0.5 850,342 - MPMX19_04482 0.62 -0.4 850,342 - MPMX19_04482 0.62 +0.1 850,342 - MPMX19_04482 0.62 -0.6 850,347 + MPMX19_04482 0.62 -1.6 850,347 + MPMX19_04482 0.62 -0.9 850,347 + MPMX19_04482 0.62 -0.1 850,347 + MPMX19_04482 0.62 -0.3 850,348 - MPMX19_04482 0.63 -2.3 850,348 - MPMX19_04482 0.63 -0.8 850,374 + MPMX19_04482 0.65 -2.2 850,374 + MPMX19_04482 0.65 +0.7 850,374 + MPMX19_04482 0.65 +0.5 850,509 + MPMX19_04482 0.77 -1.8 850,510 - MPMX19_04482 0.77 -1.8 851,044 + MPMX19_04483 0.23 +1.3 851,045 - MPMX19_04483 0.23 -1.0 851,045 - MPMX19_04483 0.23 -1.3 851,045 - MPMX19_04483 0.23 -0.8 851,045 - MPMX19_04483 0.23 +0.0 851,173 + MPMX19_04483 0.36 -0.0 851,173 + MPMX19_04483 0.36 -0.4 851,173 + MPMX19_04483 0.36 -1.3 851,173 + MPMX19_04483 0.36 -0.3 851,174 - MPMX19_04483 0.36 -0.6 851,174 - MPMX19_04483 0.36 -1.6 851,174 - MPMX19_04483 0.36 -2.1 851,174 - MPMX19_04483 0.36 -1.8 851,299 + MPMX19_04483 0.48 -0.5 851,299 + MPMX19_04483 0.48 -0.3 851,300 - MPMX19_04483 0.48 -2.2 851,300 - MPMX19_04483 0.48 +0.9 851,300 - MPMX19_04483 0.48 -1.4 851,300 - MPMX19_04483 0.48 -1.3 851,656 + MPMX19_04483 0.82 -2.5 851,656 + MPMX19_04483 0.82 -1.1 851,656 + MPMX19_04483 0.82 -1.6 851,656 + MPMX19_04483 0.82 -0.7 851,656 + MPMX19_04483 0.82 +0.3 851,657 - MPMX19_04483 0.83 -1.3 851,657 - MPMX19_04483 0.83 -0.0 851,740 + -0.1 851,741 - -0.7 851,741 - -0.6 851,741 - -2.4 851,741 - +0.2 851,743 + +0.0 851,744 - +0.5 851,744 - -0.2 851,744 - -0.1 851,744 - -1.7 851,821 + +0.1 851,822 - -0.2 851,822 - -0.8 851,944 + +0.5 851,944 + +0.6 851,944 + -0.6 851,945 - +0.6 851,945 - -1.2 851,945 - -0.4 852,049 + MPMX19_04484 0.31 +1.0 852,049 + MPMX19_04484 0.31 -0.4 852,049 + MPMX19_04484 0.31 +0.9 852,049 + MPMX19_04484 0.31 -2.1 852,049 + MPMX19_04484 0.31 -0.6 852,049 + MPMX19_04484 0.31 -1.1 852,049 + MPMX19_04484 0.31 +0.4 852,049 + MPMX19_04484 0.31 -0.8 852,049 + MPMX19_04484 0.31 -1.4 852,049 + MPMX19_04484 0.31 -1.7 852,050 - MPMX19_04484 0.31 +0.0 852,050 - MPMX19_04484 0.31 +0.9 852,050 - MPMX19_04484 0.31 -0.4 852,050 - MPMX19_04484 0.31 +1.0 852,050 - MPMX19_04484 0.31 +1.7 852,050 - MPMX19_04484 0.31 -2.1 852,050 - MPMX19_04484 0.31 +0.4 852,050 - MPMX19_04484 0.31 +0.2 852,050 - MPMX19_04484 0.31 -0.3 852,050 - MPMX19_04484 0.31 -1.0 852,050 - MPMX19_04484 0.31 -0.3 852,322 + -1.4 852,322 + -1.0 852,322 + +0.8 852,322 + -0.6 852,323 - -0.5 852,323 - -0.1 852,323 - -1.4 852,323 - +0.5 852,398 - -0.8 852,398 - -0.4 852,574 + MPMX19_04485 0.32 -1.4 852,574 + MPMX19_04485 0.32 +0.7 852,574 + MPMX19_04485 0.32 -0.8 852,574 + MPMX19_04485 0.32 -0.6 852,575 - MPMX19_04485 0.32 -0.4 852,733 + MPMX19_04485 0.51 -1.8 852,733 + MPMX19_04485 0.51 -0.6 852,733 + MPMX19_04485 0.51 -1.1 852,733 + MPMX19_04485 0.51 +1.5 852,733 + MPMX19_04485 0.51 -0.6 852,734 - MPMX19_04485 0.52 -0.6 852,734 - MPMX19_04485 0.52 -0.2 852,757 + MPMX19_04485 0.54 +0.6 852,757 + MPMX19_04485 0.54 -0.4 852,757 + MPMX19_04485 0.54 -0.8 852,757 + MPMX19_04485 0.54 -1.0 852,757 + MPMX19_04485 0.54 -1.8 852,758 - MPMX19_04485 0.55 -0.6 852,758 - MPMX19_04485 0.55 +0.7
Or see this region's nucleotide sequence