Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04476 and MPMX19_04477 are separated by 641 nucleotides MPMX19_04477 and MPMX19_04478 are separated by 60 nucleotides MPMX19_04478 and MPMX19_04479 are separated by 59 nucleotides
MPMX19_04476: MPMX19_04476 - hypothetical protein, at 843,718 to 844,134
_04476
MPMX19_04477: MPMX19_04477 - hypothetical protein, at 844,776 to 845,339
_04477
MPMX19_04478: MPMX19_04478 - hypothetical protein, at 845,400 to 846,236
_04478
MPMX19_04479: MPMX19_04479 - N-ethylmaleimide reductase, at 846,296 to 847,378
_04479
Position (kb) 844
845
846 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.036 kb on + strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.037 kb on - strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.052 kb on + strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.053 kb on - strand, within MPMX19_04476 at 844.136 kb on + strand at 844.162 kb on + strand at 844.162 kb on + strand at 844.162 kb on + strand at 844.162 kb on + strand at 844.163 kb on - strand at 844.163 kb on - strand at 844.163 kb on - strand at 844.163 kb on - strand at 844.183 kb on + strand at 844.184 kb on - strand at 844.194 kb on + strand at 844.194 kb on + strand at 844.194 kb on + strand at 844.195 kb on - strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.207 kb on + strand at 844.208 kb on - strand at 844.208 kb on - strand at 844.208 kb on - strand at 844.208 kb on - strand at 844.257 kb on + strand at 844.258 kb on - strand at 844.258 kb on - strand at 844.312 kb on + strand at 844.364 kb on + strand at 844.551 kb on + strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.552 kb on - strand at 844.703 kb on + strand at 844.703 kb on + strand at 844.703 kb on + strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.704 kb on - strand at 844.706 kb on - strand at 844.706 kb on - strand at 844.777 kb on + strand at 844.777 kb on + strand at 844.777 kb on + strand at 844.778 kb on - strand at 844.778 kb on - strand at 844.778 kb on - strand at 845.092 kb on + strand, within MPMX19_04477 at 845.092 kb on + strand, within MPMX19_04477 at 845.093 kb on - strand, within MPMX19_04477 at 845.093 kb on - strand, within MPMX19_04477 at 845.093 kb on - strand, within MPMX19_04477 at 845.104 kb on + strand, within MPMX19_04477 at 845.104 kb on + strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477 at 845.105 kb on - strand, within MPMX19_04477 at 845.198 kb on - strand, within MPMX19_04477 at 845.505 kb on + strand, within MPMX19_04478 at 845.505 kb on + strand, within MPMX19_04478 at 845.505 kb on + strand, within MPMX19_04478 at 845.505 kb on + strand, within MPMX19_04478 at 845.505 kb on + strand, within MPMX19_04478 at 845.506 kb on - strand, within MPMX19_04478 at 845.506 kb on - strand, within MPMX19_04478 at 845.904 kb on + strand, within MPMX19_04478 at 845.904 kb on + strand, within MPMX19_04478 at 845.905 kb on - strand, within MPMX19_04478 at 845.976 kb on + strand, within MPMX19_04478 at 845.976 kb on + strand, within MPMX19_04478 at 845.976 kb on + strand, within MPMX19_04478 at 845.976 kb on + strand, within MPMX19_04478 at 845.976 kb on + strand, within MPMX19_04478 at 845.976 kb on + strand, within MPMX19_04478 at 845.976 kb on + strand, within MPMX19_04478 at 845.976 kb on + strand, within MPMX19_04478 at 845.976 kb on + strand, within MPMX19_04478 at 845.976 kb on + strand, within MPMX19_04478 at 845.976 kb on + strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 845.977 kb on - strand, within MPMX19_04478 at 846.159 kb on + strand at 846.159 kb on + strand at 846.159 kb on + strand at 846.159 kb on + strand at 846.159 kb on + strand at 846.159 kb on + strand at 846.159 kb on + strand at 846.159 kb on + strand at 846.159 kb on + strand at 846.160 kb on - strand at 846.160 kb on - strand at 846.160 kb on - strand at 846.160 kb on - strand at 846.160 kb on - strand at 846.160 kb on - strand at 846.160 kb on - strand at 846.160 kb on - strand at 846.324 kb on - strand at 846.324 kb on - strand at 846.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 844,036 + MPMX19_04476 0.76 -1.0 844,036 + MPMX19_04476 0.76 -1.8 844,036 + MPMX19_04476 0.76 +0.3 844,036 + MPMX19_04476 0.76 -0.8 844,036 + MPMX19_04476 0.76 -1.0 844,036 + MPMX19_04476 0.76 -0.5 844,036 + MPMX19_04476 0.76 -1.3 844,036 + MPMX19_04476 0.76 -0.1 844,036 + MPMX19_04476 0.76 +3.3 844,036 + MPMX19_04476 0.76 -1.1 844,036 + MPMX19_04476 0.76 -0.3 844,037 - MPMX19_04476 0.76 +0.2 844,037 - MPMX19_04476 0.76 -1.4 844,037 - MPMX19_04476 0.76 +0.3 844,037 - MPMX19_04476 0.76 -0.4 844,037 - MPMX19_04476 0.76 -0.0 844,037 - MPMX19_04476 0.76 +0.4 844,037 - MPMX19_04476 0.76 -0.4 844,037 - MPMX19_04476 0.76 -1.6 844,037 - MPMX19_04476 0.76 +0.4 844,037 - MPMX19_04476 0.76 -0.4 844,037 - MPMX19_04476 0.76 +0.3 844,052 + MPMX19_04476 0.80 +0.7 844,052 + MPMX19_04476 0.80 -1.4 844,052 + MPMX19_04476 0.80 -2.6 844,052 + MPMX19_04476 0.80 -1.4 844,053 - MPMX19_04476 0.80 +0.2 844,053 - MPMX19_04476 0.80 +0.1 844,053 - MPMX19_04476 0.80 +0.9 844,053 - MPMX19_04476 0.80 -0.6 844,053 - MPMX19_04476 0.80 -0.1 844,136 + -0.4 844,162 + -2.3 844,162 + -0.7 844,162 + -0.4 844,162 + -0.4 844,163 - -0.8 844,163 - -2.3 844,163 - -1.3 844,163 - -1.2 844,183 + +0.3 844,184 - +0.5 844,194 + +1.5 844,194 + -0.4 844,194 + -0.6 844,195 - -1.2 844,207 + -1.6 844,207 + -0.6 844,207 + -1.4 844,207 + +0.5 844,207 + +0.9 844,207 + +0.5 844,207 + -1.9 844,207 + -1.1 844,208 - +0.2 844,208 - +0.6 844,208 - -1.3 844,208 - -2.3 844,257 + -0.5 844,258 - -2.2 844,258 - -0.8 844,312 + -0.2 844,364 + -0.7 844,551 + -1.6 844,552 - -0.8 844,552 - -1.0 844,552 - -0.6 844,552 - +1.2 844,552 - -0.8 844,703 + +0.5 844,703 + +0.2 844,703 + -0.7 844,704 - -2.3 844,704 - -2.2 844,704 - +1.3 844,704 - +0.5 844,704 - -1.1 844,704 - +1.3 844,704 - -2.6 844,704 - -0.1 844,706 - -1.7 844,706 - -0.8 844,777 + -1.4 844,777 + +0.6 844,777 + +0.5 844,778 - -0.9 844,778 - -1.5 844,778 - -0.4 845,092 + MPMX19_04477 0.56 -1.1 845,092 + MPMX19_04477 0.56 -0.1 845,093 - MPMX19_04477 0.56 -2.3 845,093 - MPMX19_04477 0.56 -0.3 845,093 - MPMX19_04477 0.56 -1.6 845,104 + MPMX19_04477 0.58 -1.6 845,104 + MPMX19_04477 0.58 +0.3 845,105 - MPMX19_04477 0.58 -0.8 845,105 - MPMX19_04477 0.58 -1.3 845,105 - MPMX19_04477 0.58 -1.3 845,105 - MPMX19_04477 0.58 +0.3 845,198 - MPMX19_04477 0.75 -0.6 845,505 + MPMX19_04478 0.13 -0.7 845,505 + MPMX19_04478 0.13 -0.8 845,505 + MPMX19_04478 0.13 -2.2 845,505 + MPMX19_04478 0.13 +0.0 845,505 + MPMX19_04478 0.13 +1.7 845,506 - MPMX19_04478 0.13 +2.2 845,506 - MPMX19_04478 0.13 -0.6 845,904 + MPMX19_04478 0.60 -0.1 845,904 + MPMX19_04478 0.60 +0.2 845,905 - MPMX19_04478 0.60 -1.1 845,976 + MPMX19_04478 0.69 -0.6 845,976 + MPMX19_04478 0.69 -1.6 845,976 + MPMX19_04478 0.69 +0.5 845,976 + MPMX19_04478 0.69 -2.3 845,976 + MPMX19_04478 0.69 -0.4 845,976 + MPMX19_04478 0.69 +1.7 845,976 + MPMX19_04478 0.69 +0.5 845,976 + MPMX19_04478 0.69 -0.7 845,976 + MPMX19_04478 0.69 -2.3 845,976 + MPMX19_04478 0.69 +0.2 845,976 + MPMX19_04478 0.69 +0.5 845,977 - MPMX19_04478 0.69 +1.3 845,977 - MPMX19_04478 0.69 +0.2 845,977 - MPMX19_04478 0.69 -1.6 845,977 - MPMX19_04478 0.69 +0.7 845,977 - MPMX19_04478 0.69 -1.1 845,977 - MPMX19_04478 0.69 -1.5 845,977 - MPMX19_04478 0.69 -2.0 845,977 - MPMX19_04478 0.69 -0.3 845,977 - MPMX19_04478 0.69 -2.1 845,977 - MPMX19_04478 0.69 -0.9 845,977 - MPMX19_04478 0.69 -0.8 845,977 - MPMX19_04478 0.69 -0.3 845,977 - MPMX19_04478 0.69 +0.7 846,159 + +0.3 846,159 + -0.1 846,159 + -0.5 846,159 + +1.7 846,159 + -0.1 846,159 + +1.0 846,159 + +0.0 846,159 + -1.3 846,159 + -0.3 846,160 - -0.7 846,160 - +1.1 846,160 - +0.5 846,160 - +2.5 846,160 - -0.7 846,160 - -0.7 846,160 - -1.3 846,160 - +0.3 846,324 - -1.4 846,324 - -1.7 846,324 - -1.8
Or see this region's nucleotide sequence