Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04283 and MPMX19_04284 are separated by 163 nucleotides MPMX19_04284 and MPMX19_04285 are separated by 98 nucleotides
MPMX19_04283: MPMX19_04283 - hypothetical protein, at 642,713 to 643,348
_04283
MPMX19_04284: MPMX19_04284 - hypothetical protein, at 643,512 to 643,832
_04284
MPMX19_04285: MPMX19_04285 - Homoserine O-acetyltransferase, at 643,931 to 645,145
_04285
Position (kb) 643
644 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 642.714 kb on + strand at 642.714 kb on + strand at 642.714 kb on + strand at 642.715 kb on - strand at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.128 kb on + strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.129 kb on - strand, within MPMX19_04283 at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.381 kb on + strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.382 kb on - strand at 643.419 kb on + strand at 643.419 kb on + strand at 643.419 kb on + strand at 643.420 kb on - strand at 643.420 kb on - strand at 643.420 kb on - strand at 643.420 kb on - strand at 643.420 kb on - strand at 643.462 kb on + strand at 643.560 kb on + strand, within MPMX19_04284 at 643.560 kb on + strand, within MPMX19_04284 at 643.561 kb on - strand, within MPMX19_04284 at 643.561 kb on - strand, within MPMX19_04284 at 643.561 kb on - strand, within MPMX19_04284 at 643.561 kb on - strand, within MPMX19_04284 at 643.561 kb on - strand, within MPMX19_04284 at 643.660 kb on - strand, within MPMX19_04284 at 643.761 kb on + strand, within MPMX19_04284 at 643.761 kb on + strand, within MPMX19_04284 at 643.761 kb on + strand, within MPMX19_04284 at 643.761 kb on + strand, within MPMX19_04284 at 643.762 kb on - strand, within MPMX19_04284 at 643.762 kb on - strand, within MPMX19_04284 at 643.762 kb on - strand, within MPMX19_04284 at 643.762 kb on - strand, within MPMX19_04284 at 643.762 kb on - strand, within MPMX19_04284 at 643.831 kb on - strand at 643.849 kb on + strand at 643.849 kb on + strand at 643.849 kb on + strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.850 kb on - strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.885 kb on + strand at 643.886 kb on - strand at 643.886 kb on - strand at 643.886 kb on - strand at 643.886 kb on - strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.891 kb on + strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.892 kb on - strand at 643.908 kb on + strand at 643.908 kb on + strand at 643.909 kb on - strand at 643.909 kb on - strand at 643.909 kb on - strand at 644.066 kb on + strand, within MPMX19_04285 at 644.120 kb on + strand, within MPMX19_04285 at 644.121 kb on - strand, within MPMX19_04285 at 644.121 kb on - strand, within MPMX19_04285 at 644.121 kb on - strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.182 kb on + strand, within MPMX19_04285 at 644.183 kb on - strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.201 kb on + strand, within MPMX19_04285 at 644.202 kb on - strand, within MPMX19_04285 at 644.202 kb on - strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.276 kb on + strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.277 kb on - strand, within MPMX19_04285 at 644.378 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.648 kb on + strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.649 kb on - strand, within MPMX19_04285 at 644.651 kb on + strand, within MPMX19_04285 at 644.651 kb on + strand, within MPMX19_04285 at 644.651 kb on + strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.652 kb on - strand, within MPMX19_04285 at 644.798 kb on + strand, within MPMX19_04285 at 644.798 kb on + strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285 at 644.799 kb on - strand, within MPMX19_04285
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 642,714 + -0.2 642,714 + -0.7 642,714 + -0.1 642,715 - -0.5 643,128 + MPMX19_04283 0.65 -0.7 643,128 + MPMX19_04283 0.65 -0.2 643,128 + MPMX19_04283 0.65 -0.5 643,128 + MPMX19_04283 0.65 -0.7 643,128 + MPMX19_04283 0.65 -1.3 643,128 + MPMX19_04283 0.65 -1.9 643,128 + MPMX19_04283 0.65 +1.5 643,128 + MPMX19_04283 0.65 -0.4 643,128 + MPMX19_04283 0.65 -1.4 643,128 + MPMX19_04283 0.65 +1.2 643,128 + MPMX19_04283 0.65 -0.7 643,128 + MPMX19_04283 0.65 +1.2 643,128 + MPMX19_04283 0.65 +0.1 643,129 - MPMX19_04283 0.65 +1.6 643,129 - MPMX19_04283 0.65 +1.0 643,129 - MPMX19_04283 0.65 -1.4 643,129 - MPMX19_04283 0.65 +2.0 643,129 - MPMX19_04283 0.65 +1.3 643,129 - MPMX19_04283 0.65 -0.2 643,129 - MPMX19_04283 0.65 -1.3 643,129 - MPMX19_04283 0.65 +0.6 643,129 - MPMX19_04283 0.65 +0.5 643,381 + -0.5 643,381 + +0.3 643,381 + -1.3 643,381 + +0.1 643,381 + -1.0 643,381 + -1.2 643,381 + +0.0 643,381 + -1.3 643,381 + +1.6 643,382 - -0.1 643,382 - -1.0 643,382 - +0.6 643,382 - -1.3 643,382 - -0.9 643,382 - +0.9 643,382 - -0.3 643,382 - -1.6 643,382 - -0.9 643,419 + +0.3 643,419 + -2.0 643,419 + +0.0 643,420 - -1.4 643,420 - +1.2 643,420 - -0.9 643,420 - +0.5 643,420 - -0.1 643,462 + -0.0 643,560 + MPMX19_04284 0.15 -1.2 643,560 + MPMX19_04284 0.15 -2.4 643,561 - MPMX19_04284 0.15 -0.5 643,561 - MPMX19_04284 0.15 -1.1 643,561 - MPMX19_04284 0.15 +0.2 643,561 - MPMX19_04284 0.15 -1.0 643,561 - MPMX19_04284 0.15 -1.2 643,660 - MPMX19_04284 0.46 -1.7 643,761 + MPMX19_04284 0.78 -0.6 643,761 + MPMX19_04284 0.78 -1.4 643,761 + MPMX19_04284 0.78 -0.6 643,761 + MPMX19_04284 0.78 -1.1 643,762 - MPMX19_04284 0.78 -2.2 643,762 - MPMX19_04284 0.78 -2.0 643,762 - MPMX19_04284 0.78 +1.7 643,762 - MPMX19_04284 0.78 +1.9 643,762 - MPMX19_04284 0.78 -1.7 643,831 - +1.7 643,849 + +0.7 643,849 + -1.4 643,849 + +0.3 643,850 - -0.8 643,850 - -0.1 643,850 - -2.1 643,850 - +0.6 643,850 - +0.5 643,850 - -0.0 643,850 - -1.7 643,850 - -0.7 643,885 + -3.0 643,885 + +0.6 643,885 + -0.8 643,885 + +0.9 643,885 + -0.8 643,885 + +0.2 643,885 + +0.7 643,885 + -1.2 643,885 + -1.1 643,886 - +0.2 643,886 - +0.3 643,886 - -0.2 643,886 - +0.9 643,891 + -0.9 643,891 + +0.1 643,891 + -2.0 643,891 + -2.4 643,891 + -1.1 643,891 + -1.1 643,891 + -0.6 643,891 + -1.6 643,891 + -0.4 643,891 + +0.4 643,891 + +0.0 643,892 - -1.4 643,892 - -1.3 643,892 - -0.2 643,892 - +0.0 643,892 - +0.0 643,892 - -1.1 643,892 - +0.1 643,892 - -0.4 643,892 - -0.7 643,892 - -1.3 643,908 + +0.2 643,908 + -0.8 643,909 - -0.6 643,909 - -1.2 643,909 - -1.2 644,066 + MPMX19_04285 0.11 +0.1 644,120 + MPMX19_04285 0.16 -2.2 644,121 - MPMX19_04285 0.16 -0.3 644,121 - MPMX19_04285 0.16 -1.1 644,121 - MPMX19_04285 0.16 +0.3 644,182 + MPMX19_04285 0.21 +0.2 644,182 + MPMX19_04285 0.21 -1.2 644,182 + MPMX19_04285 0.21 -0.2 644,182 + MPMX19_04285 0.21 -0.1 644,183 - MPMX19_04285 0.21 -1.6 644,201 + MPMX19_04285 0.22 +0.5 644,201 + MPMX19_04285 0.22 +0.1 644,201 + MPMX19_04285 0.22 +1.1 644,201 + MPMX19_04285 0.22 -1.0 644,202 - MPMX19_04285 0.22 -0.4 644,202 - MPMX19_04285 0.22 -1.1 644,276 + MPMX19_04285 0.28 -0.9 644,276 + MPMX19_04285 0.28 +0.3 644,276 + MPMX19_04285 0.28 -1.0 644,276 + MPMX19_04285 0.28 -1.9 644,276 + MPMX19_04285 0.28 -0.3 644,276 + MPMX19_04285 0.28 +0.6 644,277 - MPMX19_04285 0.28 -1.3 644,277 - MPMX19_04285 0.28 -0.2 644,277 - MPMX19_04285 0.28 +0.0 644,277 - MPMX19_04285 0.28 -0.3 644,378 + MPMX19_04285 0.37 -0.4 644,648 + MPMX19_04285 0.59 -0.2 644,648 + MPMX19_04285 0.59 -0.1 644,648 + MPMX19_04285 0.59 -0.2 644,648 + MPMX19_04285 0.59 +0.2 644,648 + MPMX19_04285 0.59 -1.7 644,648 + MPMX19_04285 0.59 -0.5 644,649 - MPMX19_04285 0.59 -1.4 644,649 - MPMX19_04285 0.59 -1.6 644,649 - MPMX19_04285 0.59 -0.3 644,649 - MPMX19_04285 0.59 +0.1 644,649 - MPMX19_04285 0.59 -0.2 644,649 - MPMX19_04285 0.59 -0.2 644,649 - MPMX19_04285 0.59 -0.9 644,651 + MPMX19_04285 0.59 +0.5 644,651 + MPMX19_04285 0.59 -0.3 644,651 + MPMX19_04285 0.59 +0.1 644,652 - MPMX19_04285 0.59 -0.3 644,652 - MPMX19_04285 0.59 -1.3 644,652 - MPMX19_04285 0.59 -1.3 644,652 - MPMX19_04285 0.59 -0.6 644,798 + MPMX19_04285 0.71 +0.8 644,798 + MPMX19_04285 0.71 -0.4 644,799 - MPMX19_04285 0.71 -1.0 644,799 - MPMX19_04285 0.71 -1.1 644,799 - MPMX19_04285 0.71 +1.0 644,799 - MPMX19_04285 0.71 +0.7 644,799 - MPMX19_04285 0.71 -2.2
Or see this region's nucleotide sequence