Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04225 and MPMX19_04226 are separated by 99 nucleotides MPMX19_04226 and MPMX19_04227 are separated by 21 nucleotides MPMX19_04227 and MPMX19_04228 are separated by 187 nucleotides
MPMX19_04225: MPMX19_04225 - hypothetical protein, at 569,878 to 571,359
_04225
MPMX19_04226: MPMX19_04226 - hypothetical protein, at 571,459 to 571,797
_04226
MPMX19_04227: MPMX19_04227 - hypothetical protein, at 571,819 to 572,067
_04227
MPMX19_04228: MPMX19_04228 - hypothetical protein, at 572,255 to 573,847
_04228
Position (kb) 571
572 Strain fitness (log2 ratio) -2
-1
0
1
2 at 570.581 kb on + strand, within MPMX19_04225 at 570.581 kb on + strand, within MPMX19_04225 at 570.581 kb on + strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.582 kb on - strand, within MPMX19_04225 at 570.653 kb on + strand, within MPMX19_04225 at 570.653 kb on + strand, within MPMX19_04225 at 570.654 kb on - strand, within MPMX19_04225 at 571.353 kb on + strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.354 kb on - strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.359 kb on + strand at 571.360 kb on - strand at 571.360 kb on - strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.371 kb on + strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.372 kb on - strand at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.702 kb on + strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.703 kb on - strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 571.723 kb on + strand, within MPMX19_04226 at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.256 kb on + strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.257 kb on - strand at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.478 kb on + strand, within MPMX19_04228 at 572.479 kb on - strand, within MPMX19_04228 at 572.479 kb on - strand, within MPMX19_04228 at 572.479 kb on - strand, within MPMX19_04228 at 572.479 kb on - strand, within MPMX19_04228 at 572.479 kb on - strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.481 kb on + strand, within MPMX19_04228 at 572.482 kb on - strand, within MPMX19_04228 at 572.482 kb on - strand, within MPMX19_04228 at 572.482 kb on - strand, within MPMX19_04228 at 572.482 kb on - strand, within MPMX19_04228 at 572.482 kb on - strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.531 kb on + strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.532 kb on - strand, within MPMX19_04228 at 572.718 kb on + strand, within MPMX19_04228 at 572.724 kb on + strand, within MPMX19_04228 at 572.724 kb on + strand, within MPMX19_04228 at 572.725 kb on - strand, within MPMX19_04228 at 572.725 kb on - strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.748 kb on + strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.749 kb on - strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.775 kb on + strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228 at 572.776 kb on - strand, within MPMX19_04228
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 570,581 + MPMX19_04225 0.47 +0.2 570,581 + MPMX19_04225 0.47 -1.5 570,581 + MPMX19_04225 0.47 -0.0 570,582 - MPMX19_04225 0.48 -0.5 570,582 - MPMX19_04225 0.48 +1.5 570,582 - MPMX19_04225 0.48 +0.2 570,582 - MPMX19_04225 0.48 +0.2 570,582 - MPMX19_04225 0.48 -2.3 570,653 + MPMX19_04225 0.52 -0.3 570,653 + MPMX19_04225 0.52 -0.1 570,654 - MPMX19_04225 0.52 +0.1 571,353 + +1.2 571,354 - -0.5 571,354 - -0.6 571,354 - -0.0 571,354 - -0.9 571,359 + +0.3 571,359 + -0.7 571,359 + -0.2 571,359 + +0.5 571,360 - +1.1 571,360 - -2.3 571,371 + +0.1 571,371 + -0.4 571,371 + -1.6 571,371 + -0.6 571,371 + -0.6 571,371 + -0.0 571,371 + +0.4 571,371 + -1.9 571,371 + -0.8 571,372 - -0.9 571,372 - +1.1 571,372 - -0.7 571,372 - +0.4 571,372 - +0.7 571,372 - -0.9 571,372 - -2.5 571,372 - -0.2 571,702 + MPMX19_04226 0.72 -1.3 571,702 + MPMX19_04226 0.72 +0.7 571,702 + MPMX19_04226 0.72 -0.3 571,702 + MPMX19_04226 0.72 +0.0 571,702 + MPMX19_04226 0.72 -1.2 571,703 - MPMX19_04226 0.72 +0.1 571,703 - MPMX19_04226 0.72 +1.1 571,703 - MPMX19_04226 0.72 -1.8 571,703 - MPMX19_04226 0.72 +0.7 571,703 - MPMX19_04226 0.72 -1.6 571,703 - MPMX19_04226 0.72 +0.8 571,703 - MPMX19_04226 0.72 -0.0 571,703 - MPMX19_04226 0.72 +0.6 571,703 - MPMX19_04226 0.72 -0.1 571,703 - MPMX19_04226 0.72 -1.5 571,703 - MPMX19_04226 0.72 -0.1 571,703 - MPMX19_04226 0.72 +0.2 571,723 + MPMX19_04226 0.78 +1.0 571,723 + MPMX19_04226 0.78 +0.6 571,723 + MPMX19_04226 0.78 -0.3 572,256 + -0.9 572,256 + -0.3 572,256 + +1.3 572,256 + +1.0 572,256 + +1.0 572,257 - +1.0 572,257 - -0.6 572,257 - +0.4 572,257 - -0.6 572,257 - -1.4 572,478 + MPMX19_04228 0.14 -0.6 572,478 + MPMX19_04228 0.14 +1.0 572,478 + MPMX19_04228 0.14 +0.1 572,478 + MPMX19_04228 0.14 +0.4 572,478 + MPMX19_04228 0.14 -0.4 572,478 + MPMX19_04228 0.14 -1.1 572,478 + MPMX19_04228 0.14 +1.1 572,479 - MPMX19_04228 0.14 +0.4 572,479 - MPMX19_04228 0.14 +0.4 572,479 - MPMX19_04228 0.14 -0.9 572,479 - MPMX19_04228 0.14 -0.3 572,479 - MPMX19_04228 0.14 +0.3 572,481 + MPMX19_04228 0.14 +0.2 572,481 + MPMX19_04228 0.14 +1.5 572,481 + MPMX19_04228 0.14 -0.3 572,481 + MPMX19_04228 0.14 +0.2 572,481 + MPMX19_04228 0.14 -0.6 572,481 + MPMX19_04228 0.14 -1.1 572,481 + MPMX19_04228 0.14 -1.5 572,482 - MPMX19_04228 0.14 -0.2 572,482 - MPMX19_04228 0.14 -0.3 572,482 - MPMX19_04228 0.14 +0.9 572,482 - MPMX19_04228 0.14 +1.1 572,482 - MPMX19_04228 0.14 -0.6 572,531 + MPMX19_04228 0.17 -1.6 572,531 + MPMX19_04228 0.17 -0.1 572,531 + MPMX19_04228 0.17 -0.9 572,531 + MPMX19_04228 0.17 +1.4 572,531 + MPMX19_04228 0.17 +0.1 572,531 + MPMX19_04228 0.17 -0.6 572,532 - MPMX19_04228 0.17 -0.5 572,532 - MPMX19_04228 0.17 +0.0 572,532 - MPMX19_04228 0.17 +0.7 572,532 - MPMX19_04228 0.17 +0.9 572,532 - MPMX19_04228 0.17 +0.4 572,532 - MPMX19_04228 0.17 -0.8 572,532 - MPMX19_04228 0.17 -0.7 572,532 - MPMX19_04228 0.17 -1.6 572,532 - MPMX19_04228 0.17 -0.6 572,718 + MPMX19_04228 0.29 -2.3 572,724 + MPMX19_04228 0.29 +0.4 572,724 + MPMX19_04228 0.29 -1.3 572,725 - MPMX19_04228 0.30 -0.9 572,725 - MPMX19_04228 0.30 -1.6 572,748 + MPMX19_04228 0.31 +0.5 572,748 + MPMX19_04228 0.31 -0.8 572,748 + MPMX19_04228 0.31 +0.5 572,748 + MPMX19_04228 0.31 +2.0 572,748 + MPMX19_04228 0.31 -1.8 572,748 + MPMX19_04228 0.31 -0.3 572,748 + MPMX19_04228 0.31 -0.2 572,748 + MPMX19_04228 0.31 -0.0 572,748 + MPMX19_04228 0.31 +1.0 572,749 - MPMX19_04228 0.31 -1.1 572,749 - MPMX19_04228 0.31 -2.3 572,749 - MPMX19_04228 0.31 +0.2 572,749 - MPMX19_04228 0.31 -0.5 572,749 - MPMX19_04228 0.31 -1.5 572,749 - MPMX19_04228 0.31 -1.1 572,775 + MPMX19_04228 0.33 +0.8 572,775 + MPMX19_04228 0.33 -1.5 572,775 + MPMX19_04228 0.33 -0.3 572,775 + MPMX19_04228 0.33 -0.6 572,775 + MPMX19_04228 0.33 +0.5 572,775 + MPMX19_04228 0.33 +0.4 572,775 + MPMX19_04228 0.33 -0.0 572,775 + MPMX19_04228 0.33 -1.5 572,775 + MPMX19_04228 0.33 -0.6 572,775 + MPMX19_04228 0.33 +1.2 572,775 + MPMX19_04228 0.33 +0.3 572,775 + MPMX19_04228 0.33 -0.5 572,775 + MPMX19_04228 0.33 -1.6 572,775 + MPMX19_04228 0.33 -0.3 572,775 + MPMX19_04228 0.33 +0.9 572,775 + MPMX19_04228 0.33 -1.2 572,775 + MPMX19_04228 0.33 -0.1 572,775 + MPMX19_04228 0.33 -1.0 572,775 + MPMX19_04228 0.33 -1.2 572,775 + MPMX19_04228 0.33 -0.2 572,775 + MPMX19_04228 0.33 -1.1 572,775 + MPMX19_04228 0.33 +0.9 572,775 + MPMX19_04228 0.33 +0.1 572,775 + MPMX19_04228 0.33 -1.1 572,775 + MPMX19_04228 0.33 +0.7 572,775 + MPMX19_04228 0.33 -0.6 572,775 + MPMX19_04228 0.33 -0.6 572,775 + MPMX19_04228 0.33 -0.4 572,775 + MPMX19_04228 0.33 +2.3 572,775 + MPMX19_04228 0.33 -0.4 572,775 + MPMX19_04228 0.33 -0.5 572,775 + MPMX19_04228 0.33 +0.2 572,776 - MPMX19_04228 0.33 +0.8 572,776 - MPMX19_04228 0.33 -1.1 572,776 - MPMX19_04228 0.33 -0.4 572,776 - MPMX19_04228 0.33 -1.5 572,776 - MPMX19_04228 0.33 -0.2 572,776 - MPMX19_04228 0.33 -0.6 572,776 - MPMX19_04228 0.33 -2.3 572,776 - MPMX19_04228 0.33 -1.1 572,776 - MPMX19_04228 0.33 -0.1 572,776 - MPMX19_04228 0.33 -1.6 572,776 - MPMX19_04228 0.33 -1.6 572,776 - MPMX19_04228 0.33 -0.1 572,776 - MPMX19_04228 0.33 +0.8 572,776 - MPMX19_04228 0.33 +0.1 572,776 - MPMX19_04228 0.33 +0.9 572,776 - MPMX19_04228 0.33 -1.3 572,776 - MPMX19_04228 0.33 -0.1 572,776 - MPMX19_04228 0.33 -0.9 572,776 - MPMX19_04228 0.33 -0.6 572,776 - MPMX19_04228 0.33 -1.1 572,776 - MPMX19_04228 0.33 +0.5 572,776 - MPMX19_04228 0.33 -1.1 572,776 - MPMX19_04228 0.33 +0.0 572,776 - MPMX19_04228 0.33 +0.8 572,776 - MPMX19_04228 0.33 -1.8
Or see this region's nucleotide sequence