Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04023 and MPMX19_04024 are separated by 338 nucleotides MPMX19_04024 and MPMX19_04025 are separated by 105 nucleotides MPMX19_04025 and MPMX19_04026 are separated by 226 nucleotides
MPMX19_04023: MPMX19_04023 - HTH-type transcriptional regulator XynR, at 319,706 to 320,506
_04023
MPMX19_04024: MPMX19_04024 - hypothetical protein, at 320,845 to 321,051
_04024
MPMX19_04025: MPMX19_04025 - hypothetical protein, at 321,157 to 321,384
_04025
MPMX19_04026: MPMX19_04026 - hypothetical protein, at 321,611 to 322,474
_04026
Position (kb) 320
321
322 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.886 kb on + strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.887 kb on - strand, within MPMX19_04023 at 319.952 kb on + strand, within MPMX19_04023 at 319.952 kb on + strand, within MPMX19_04023 at 319.952 kb on + strand, within MPMX19_04023 at 319.953 kb on - strand, within MPMX19_04023 at 319.953 kb on - strand, within MPMX19_04023 at 319.973 kb on + strand, within MPMX19_04023 at 319.973 kb on + strand, within MPMX19_04023 at 319.973 kb on + strand, within MPMX19_04023 at 319.973 kb on + strand, within MPMX19_04023 at 319.973 kb on + strand, within MPMX19_04023 at 319.973 kb on + strand, within MPMX19_04023 at 319.974 kb on - strand, within MPMX19_04023 at 319.974 kb on - strand, within MPMX19_04023 at 319.974 kb on - strand, within MPMX19_04023 at 319.974 kb on - strand, within MPMX19_04023 at 319.974 kb on - strand, within MPMX19_04023 at 319.976 kb on + strand, within MPMX19_04023 at 319.976 kb on + strand, within MPMX19_04023 at 319.976 kb on + strand, within MPMX19_04023 at 319.976 kb on + strand, within MPMX19_04023 at 319.976 kb on + strand, within MPMX19_04023 at 319.976 kb on + strand, within MPMX19_04023 at 319.976 kb on + strand, within MPMX19_04023 at 319.976 kb on + strand, within MPMX19_04023 at 319.976 kb on + strand, within MPMX19_04023 at 319.977 kb on - strand, within MPMX19_04023 at 319.977 kb on - strand, within MPMX19_04023 at 319.977 kb on - strand, within MPMX19_04023 at 319.988 kb on + strand, within MPMX19_04023 at 319.988 kb on + strand, within MPMX19_04023 at 319.989 kb on - strand, within MPMX19_04023 at 319.989 kb on - strand, within MPMX19_04023 at 319.989 kb on - strand, within MPMX19_04023 at 320.093 kb on + strand, within MPMX19_04023 at 320.093 kb on + strand, within MPMX19_04023 at 320.093 kb on + strand, within MPMX19_04023 at 320.093 kb on + strand, within MPMX19_04023 at 320.093 kb on + strand, within MPMX19_04023 at 320.094 kb on - strand, within MPMX19_04023 at 320.094 kb on - strand, within MPMX19_04023 at 320.094 kb on - strand, within MPMX19_04023 at 320.094 kb on - strand, within MPMX19_04023 at 320.094 kb on - strand, within MPMX19_04023 at 320.094 kb on - strand, within MPMX19_04023 at 320.094 kb on - strand, within MPMX19_04023 at 320.321 kb on + strand, within MPMX19_04023 at 320.321 kb on + strand, within MPMX19_04023 at 320.321 kb on + strand, within MPMX19_04023 at 320.321 kb on + strand, within MPMX19_04023 at 320.321 kb on + strand, within MPMX19_04023 at 320.321 kb on + strand, within MPMX19_04023 at 320.321 kb on + strand, within MPMX19_04023 at 320.321 kb on + strand, within MPMX19_04023 at 320.321 kb on + strand, within MPMX19_04023 at 320.321 kb on + strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.322 kb on - strand, within MPMX19_04023 at 320.614 kb on + strand at 320.614 kb on + strand at 320.614 kb on + strand at 320.615 kb on - strand at 320.637 kb on - strand at 320.637 kb on - strand at 320.646 kb on + strand at 320.647 kb on - strand at 320.663 kb on + strand at 320.664 kb on - strand at 320.664 kb on - strand at 320.675 kb on - strand at 320.709 kb on - strand at 320.732 kb on + strand at 320.732 kb on + strand at 320.780 kb on - strand at 320.780 kb on - strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.854 kb on + strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 320.855 kb on - strand at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.192 kb on + strand, within MPMX19_04025 at 321.193 kb on - strand, within MPMX19_04025 at 321.207 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.307 kb on + strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.308 kb on - strand, within MPMX19_04025 at 321.501 kb on + strand at 321.501 kb on + strand at 321.501 kb on + strand at 321.501 kb on + strand at 321.501 kb on + strand at 321.502 kb on - strand at 321.522 kb on + strand at 321.522 kb on + strand at 321.522 kb on + strand at 321.522 kb on + strand at 321.523 kb on - strand at 321.523 kb on - strand at 321.523 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 319,886 + MPMX19_04023 0.22 -1.9 319,886 + MPMX19_04023 0.22 -0.5 319,886 + MPMX19_04023 0.22 +1.7 319,886 + MPMX19_04023 0.22 -1.1 319,886 + MPMX19_04023 0.22 -2.2 319,886 + MPMX19_04023 0.22 +0.1 319,886 + MPMX19_04023 0.22 -0.9 319,886 + MPMX19_04023 0.22 -2.7 319,886 + MPMX19_04023 0.22 -0.9 319,886 + MPMX19_04023 0.22 +0.3 319,886 + MPMX19_04023 0.22 -0.9 319,886 + MPMX19_04023 0.22 +2.3 319,886 + MPMX19_04023 0.22 -0.9 319,886 + MPMX19_04023 0.22 +0.1 319,886 + MPMX19_04023 0.22 +0.1 319,886 + MPMX19_04023 0.22 -1.2 319,886 + MPMX19_04023 0.22 +0.7 319,886 + MPMX19_04023 0.22 +0.4 319,886 + MPMX19_04023 0.22 -0.2 319,886 + MPMX19_04023 0.22 +1.2 319,887 - MPMX19_04023 0.23 -1.2 319,887 - MPMX19_04023 0.23 +0.2 319,887 - MPMX19_04023 0.23 +0.7 319,887 - MPMX19_04023 0.23 -1.8 319,887 - MPMX19_04023 0.23 -1.6 319,887 - MPMX19_04023 0.23 -2.7 319,887 - MPMX19_04023 0.23 +1.3 319,887 - MPMX19_04023 0.23 -2.3 319,887 - MPMX19_04023 0.23 -1.8 319,887 - MPMX19_04023 0.23 -1.1 319,887 - MPMX19_04023 0.23 -1.3 319,887 - MPMX19_04023 0.23 -2.6 319,887 - MPMX19_04023 0.23 -1.5 319,887 - MPMX19_04023 0.23 -1.9 319,887 - MPMX19_04023 0.23 +0.8 319,887 - MPMX19_04023 0.23 +1.2 319,952 + MPMX19_04023 0.31 -0.5 319,952 + MPMX19_04023 0.31 -0.6 319,952 + MPMX19_04023 0.31 +1.7 319,953 - MPMX19_04023 0.31 -0.8 319,953 - MPMX19_04023 0.31 -2.5 319,973 + MPMX19_04023 0.33 -1.3 319,973 + MPMX19_04023 0.33 +0.3 319,973 + MPMX19_04023 0.33 -2.7 319,973 + MPMX19_04023 0.33 +0.4 319,973 + MPMX19_04023 0.33 +0.1 319,973 + MPMX19_04023 0.33 +0.1 319,974 - MPMX19_04023 0.33 -1.2 319,974 - MPMX19_04023 0.33 +0.4 319,974 - MPMX19_04023 0.33 +1.1 319,974 - MPMX19_04023 0.33 +0.7 319,974 - MPMX19_04023 0.33 -0.1 319,976 + MPMX19_04023 0.34 -0.5 319,976 + MPMX19_04023 0.34 -0.1 319,976 + MPMX19_04023 0.34 -0.3 319,976 + MPMX19_04023 0.34 +0.1 319,976 + MPMX19_04023 0.34 -0.2 319,976 + MPMX19_04023 0.34 -0.8 319,976 + MPMX19_04023 0.34 -1.9 319,976 + MPMX19_04023 0.34 -0.3 319,976 + MPMX19_04023 0.34 -1.6 319,977 - MPMX19_04023 0.34 -1.8 319,977 - MPMX19_04023 0.34 -0.4 319,977 - MPMX19_04023 0.34 -1.3 319,988 + MPMX19_04023 0.35 +0.4 319,988 + MPMX19_04023 0.35 +0.3 319,989 - MPMX19_04023 0.35 -0.3 319,989 - MPMX19_04023 0.35 -1.3 319,989 - MPMX19_04023 0.35 +0.5 320,093 + MPMX19_04023 0.48 -0.9 320,093 + MPMX19_04023 0.48 +0.5 320,093 + MPMX19_04023 0.48 -0.4 320,093 + MPMX19_04023 0.48 -1.5 320,093 + MPMX19_04023 0.48 -0.6 320,094 - MPMX19_04023 0.48 +1.7 320,094 - MPMX19_04023 0.48 -1.6 320,094 - MPMX19_04023 0.48 +2.7 320,094 - MPMX19_04023 0.48 -0.5 320,094 - MPMX19_04023 0.48 -2.5 320,094 - MPMX19_04023 0.48 -1.6 320,094 - MPMX19_04023 0.48 -2.0 320,321 + MPMX19_04023 0.77 +0.1 320,321 + MPMX19_04023 0.77 -0.1 320,321 + MPMX19_04023 0.77 -0.9 320,321 + MPMX19_04023 0.77 -1.6 320,321 + MPMX19_04023 0.77 -1.6 320,321 + MPMX19_04023 0.77 -1.3 320,321 + MPMX19_04023 0.77 -2.6 320,321 + MPMX19_04023 0.77 -1.6 320,321 + MPMX19_04023 0.77 -0.9 320,321 + MPMX19_04023 0.77 -1.1 320,322 - MPMX19_04023 0.77 -0.5 320,322 - MPMX19_04023 0.77 -0.6 320,322 - MPMX19_04023 0.77 +1.7 320,322 - MPMX19_04023 0.77 +0.4 320,322 - MPMX19_04023 0.77 +1.7 320,322 - MPMX19_04023 0.77 -0.8 320,322 - MPMX19_04023 0.77 +0.2 320,322 - MPMX19_04023 0.77 -1.8 320,322 - MPMX19_04023 0.77 -0.6 320,322 - MPMX19_04023 0.77 -0.3 320,322 - MPMX19_04023 0.77 +0.1 320,322 - MPMX19_04023 0.77 -0.3 320,322 - MPMX19_04023 0.77 -0.8 320,322 - MPMX19_04023 0.77 +0.1 320,322 - MPMX19_04023 0.77 +1.0 320,614 + -1.7 320,614 + -1.1 320,614 + -0.3 320,615 - -0.9 320,637 - -0.4 320,637 - -0.6 320,646 + -1.6 320,647 - -1.5 320,663 + -0.6 320,664 - +0.6 320,664 - -0.9 320,675 - -0.3 320,709 - +0.2 320,732 + -0.3 320,732 + +0.8 320,780 - +1.4 320,780 - +1.1 320,854 + -0.4 320,854 + -0.6 320,854 + -0.0 320,854 + -0.2 320,854 + +1.0 320,854 + -1.0 320,854 + +0.8 320,854 + -1.6 320,854 + -0.1 320,854 + +0.4 320,854 + +0.3 320,855 - +0.7 320,855 - -0.6 320,855 - -1.8 320,855 - -0.2 320,855 - +0.3 320,855 - +1.5 320,855 - +1.3 320,855 - -0.3 320,855 - -2.9 320,855 - -0.4 320,855 - -0.4 320,855 - +0.0 320,855 - +0.3 320,855 - -0.5 320,855 - -0.8 320,855 - -1.1 320,855 - -0.5 320,855 - -1.6 320,855 - +2.0 320,855 - +1.7 320,855 - -0.7 320,855 - -0.1 320,855 - -0.9 320,855 - +0.0 320,855 - -0.6 320,855 - -1.3 320,855 - +0.6 320,855 - -1.1 320,855 - +0.1 320,855 - -1.4 321,192 + MPMX19_04025 0.15 -1.1 321,192 + MPMX19_04025 0.15 -0.2 321,192 + MPMX19_04025 0.15 -2.3 321,192 + MPMX19_04025 0.15 -0.4 321,192 + MPMX19_04025 0.15 -1.1 321,192 + MPMX19_04025 0.15 +0.8 321,192 + MPMX19_04025 0.15 +0.3 321,193 - MPMX19_04025 0.16 -0.7 321,207 + MPMX19_04025 0.22 -0.9 321,307 + MPMX19_04025 0.66 +0.2 321,307 + MPMX19_04025 0.66 -0.5 321,307 + MPMX19_04025 0.66 -1.1 321,307 + MPMX19_04025 0.66 -1.0 321,308 - MPMX19_04025 0.66 -1.6 321,308 - MPMX19_04025 0.66 +0.7 321,308 - MPMX19_04025 0.66 +0.3 321,308 - MPMX19_04025 0.66 -0.7 321,308 - MPMX19_04025 0.66 -0.3 321,501 + -1.1 321,501 + -0.0 321,501 + +0.3 321,501 + +0.1 321,501 + +0.1 321,502 - -0.8 321,522 + +1.8 321,522 + +0.3 321,522 + +0.7 321,522 + -2.1 321,523 - -1.2 321,523 - +0.9 321,523 - +1.1
Or see this region's nucleotide sequence