Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03913 and MPMX19_03914 are separated by 39 nucleotides MPMX19_03914 and MPMX19_03915 are separated by 69 nucleotides MPMX19_03915 and MPMX19_03916 are separated by 74 nucleotides MPMX19_03916 and MPMX19_03917 overlap by 8 nucleotides
MPMX19_03913: MPMX19_03913 - hypothetical protein, at 191,253 to 192,770
_03913
MPMX19_03914: MPMX19_03914 - hypothetical protein, at 192,810 to 193,316
_03914
MPMX19_03915: MPMX19_03915 - hypothetical protein, at 193,386 to 194,351
_03915
MPMX19_03916: MPMX19_03916 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 194,426 to 195,076
_03916
MPMX19_03917: MPMX19_03917 - putative 2-dehydro-3-deoxygalactonokinase DgoK1, at 195,069 to 196,088
_03917
Position (kb) 193
194
195 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 192.550 kb on + strand, within MPMX19_03913 at 192.550 kb on + strand, within MPMX19_03913 at 192.550 kb on + strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.551 kb on - strand, within MPMX19_03913 at 192.868 kb on + strand, within MPMX19_03914 at 192.868 kb on + strand, within MPMX19_03914 at 192.868 kb on + strand, within MPMX19_03914 at 192.868 kb on + strand, within MPMX19_03914 at 192.868 kb on + strand, within MPMX19_03914 at 192.868 kb on + strand, within MPMX19_03914 at 192.869 kb on - strand, within MPMX19_03914 at 192.869 kb on - strand, within MPMX19_03914 at 192.869 kb on - strand, within MPMX19_03914 at 192.869 kb on - strand, within MPMX19_03914 at 192.869 kb on - strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.952 kb on + strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.953 kb on - strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.982 kb on + strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.983 kb on - strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.994 kb on + strand, within MPMX19_03914 at 192.995 kb on - strand, within MPMX19_03914 at 192.995 kb on - strand, within MPMX19_03914 at 192.995 kb on - strand, within MPMX19_03914 at 192.995 kb on - strand, within MPMX19_03914 at 192.995 kb on - strand, within MPMX19_03914 at 193.040 kb on - strand, within MPMX19_03914 at 193.040 kb on - strand, within MPMX19_03914 at 193.040 kb on - strand, within MPMX19_03914 at 193.387 kb on + strand at 193.387 kb on + strand at 193.387 kb on + strand at 193.387 kb on + strand at 193.387 kb on + strand at 193.387 kb on + strand at 193.387 kb on + strand at 193.388 kb on - strand at 193.388 kb on - strand at 193.388 kb on - strand at 193.388 kb on - strand at 193.474 kb on + strand at 193.474 kb on + strand at 193.475 kb on - strand at 193.475 kb on - strand at 193.475 kb on - strand at 193.475 kb on - strand at 194.083 kb on + strand, within MPMX19_03915 at 194.084 kb on - strand, within MPMX19_03915 at 194.084 kb on - strand, within MPMX19_03915 at 194.084 kb on - strand, within MPMX19_03915 at 194.194 kb on + strand, within MPMX19_03915 at 194.195 kb on - strand, within MPMX19_03915 at 194.195 kb on - strand, within MPMX19_03915 at 194.233 kb on + strand, within MPMX19_03915 at 194.234 kb on - strand, within MPMX19_03915 at 194.234 kb on - strand, within MPMX19_03915 at 194.234 kb on - strand, within MPMX19_03915 at 194.351 kb on + strand at 194.351 kb on + strand at 194.351 kb on + strand at 194.351 kb on + strand at 194.351 kb on + strand at 194.351 kb on - strand at 194.352 kb on - strand at 194.352 kb on - strand at 194.352 kb on - strand at 194.352 kb on - strand at 194.508 kb on + strand, within MPMX19_03916 at 194.508 kb on + strand, within MPMX19_03916 at 194.508 kb on + strand, within MPMX19_03916 at 194.509 kb on - strand, within MPMX19_03916 at 194.961 kb on + strand, within MPMX19_03916 at 194.962 kb on - strand, within MPMX19_03916 at 195.202 kb on + strand, within MPMX19_03917 at 195.202 kb on + strand, within MPMX19_03917 at 195.203 kb on - strand, within MPMX19_03917 at 195.203 kb on - strand, within MPMX19_03917
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 192,550 + MPMX19_03913 0.85 -1.3 192,550 + MPMX19_03913 0.85 -0.3 192,550 + MPMX19_03913 0.85 +0.1 192,551 - MPMX19_03913 0.86 +0.5 192,551 - MPMX19_03913 0.86 -0.6 192,551 - MPMX19_03913 0.86 -2.1 192,551 - MPMX19_03913 0.86 +0.6 192,551 - MPMX19_03913 0.86 -2.5 192,551 - MPMX19_03913 0.86 +0.1 192,551 - MPMX19_03913 0.86 -0.1 192,551 - MPMX19_03913 0.86 -0.4 192,868 + MPMX19_03914 0.11 -1.0 192,868 + MPMX19_03914 0.11 -0.8 192,868 + MPMX19_03914 0.11 -1.4 192,868 + MPMX19_03914 0.11 -0.4 192,868 + MPMX19_03914 0.11 -0.1 192,868 + MPMX19_03914 0.11 -0.7 192,869 - MPMX19_03914 0.12 -1.0 192,869 - MPMX19_03914 0.12 -0.7 192,869 - MPMX19_03914 0.12 -0.5 192,869 - MPMX19_03914 0.12 +1.8 192,869 - MPMX19_03914 0.12 +0.7 192,952 + MPMX19_03914 0.28 -0.6 192,952 + MPMX19_03914 0.28 -0.7 192,952 + MPMX19_03914 0.28 +0.5 192,952 + MPMX19_03914 0.28 +0.6 192,952 + MPMX19_03914 0.28 -0.7 192,952 + MPMX19_03914 0.28 -0.0 192,952 + MPMX19_03914 0.28 -0.3 192,952 + MPMX19_03914 0.28 -1.8 192,952 + MPMX19_03914 0.28 -0.3 192,952 + MPMX19_03914 0.28 +0.2 192,952 + MPMX19_03914 0.28 +0.2 192,952 + MPMX19_03914 0.28 +0.4 192,952 + MPMX19_03914 0.28 -1.0 192,952 + MPMX19_03914 0.28 -1.6 192,952 + MPMX19_03914 0.28 -0.2 192,952 + MPMX19_03914 0.28 +0.3 192,952 + MPMX19_03914 0.28 -0.7 192,952 + MPMX19_03914 0.28 +0.1 192,953 - MPMX19_03914 0.28 +0.0 192,953 - MPMX19_03914 0.28 -1.4 192,953 - MPMX19_03914 0.28 +0.3 192,953 - MPMX19_03914 0.28 +1.0 192,953 - MPMX19_03914 0.28 -0.7 192,953 - MPMX19_03914 0.28 -0.1 192,953 - MPMX19_03914 0.28 -0.8 192,953 - MPMX19_03914 0.28 +0.2 192,982 + MPMX19_03914 0.34 -0.6 192,982 + MPMX19_03914 0.34 -1.4 192,982 + MPMX19_03914 0.34 -1.8 192,982 + MPMX19_03914 0.34 -1.0 192,982 + MPMX19_03914 0.34 -0.9 192,982 + MPMX19_03914 0.34 -0.3 192,982 + MPMX19_03914 0.34 +0.2 192,982 + MPMX19_03914 0.34 -0.4 192,982 + MPMX19_03914 0.34 -0.6 192,983 - MPMX19_03914 0.34 -1.4 192,983 - MPMX19_03914 0.34 +0.7 192,983 - MPMX19_03914 0.34 -0.5 192,983 - MPMX19_03914 0.34 -0.7 192,983 - MPMX19_03914 0.34 +0.6 192,983 - MPMX19_03914 0.34 +0.8 192,983 - MPMX19_03914 0.34 -0.1 192,983 - MPMX19_03914 0.34 -0.2 192,983 - MPMX19_03914 0.34 +0.8 192,983 - MPMX19_03914 0.34 +0.8 192,983 - MPMX19_03914 0.34 +1.0 192,983 - MPMX19_03914 0.34 -0.2 192,983 - MPMX19_03914 0.34 +0.3 192,983 - MPMX19_03914 0.34 -0.6 192,983 - MPMX19_03914 0.34 -1.4 192,983 - MPMX19_03914 0.34 -0.3 192,983 - MPMX19_03914 0.34 -0.2 192,983 - MPMX19_03914 0.34 +0.1 192,983 - MPMX19_03914 0.34 +0.7 192,994 + MPMX19_03914 0.36 +0.1 192,994 + MPMX19_03914 0.36 -0.4 192,994 + MPMX19_03914 0.36 -1.4 192,994 + MPMX19_03914 0.36 +0.7 192,994 + MPMX19_03914 0.36 -2.5 192,994 + MPMX19_03914 0.36 -1.7 192,995 - MPMX19_03914 0.36 -0.2 192,995 - MPMX19_03914 0.36 +0.0 192,995 - MPMX19_03914 0.36 -2.8 192,995 - MPMX19_03914 0.36 +0.5 192,995 - MPMX19_03914 0.36 -1.7 193,040 - MPMX19_03914 0.45 +0.2 193,040 - MPMX19_03914 0.45 +0.9 193,040 - MPMX19_03914 0.45 -1.1 193,387 + -0.2 193,387 + +1.1 193,387 + -0.2 193,387 + +0.5 193,387 + -0.2 193,387 + -0.7 193,387 + +0.1 193,388 - -0.9 193,388 - +0.6 193,388 - -1.3 193,388 - +0.3 193,474 + +0.6 193,474 + -0.2 193,475 - -0.2 193,475 - -0.1 193,475 - -0.6 193,475 - -0.2 194,083 + MPMX19_03915 0.72 +0.2 194,084 - MPMX19_03915 0.72 -1.3 194,084 - MPMX19_03915 0.72 -0.8 194,084 - MPMX19_03915 0.72 -1.1 194,194 + MPMX19_03915 0.84 +0.3 194,195 - MPMX19_03915 0.84 +0.0 194,195 - MPMX19_03915 0.84 -1.2 194,233 + MPMX19_03915 0.88 -0.6 194,234 - MPMX19_03915 0.88 +1.3 194,234 - MPMX19_03915 0.88 +1.8 194,234 - MPMX19_03915 0.88 +0.1 194,351 + +0.4 194,351 + -1.3 194,351 + -0.8 194,351 + -0.2 194,351 + +0.1 194,351 - +0.2 194,352 - +0.2 194,352 - -1.1 194,352 - +0.2 194,352 - -0.0 194,508 + MPMX19_03916 0.13 +0.4 194,508 + MPMX19_03916 0.13 +0.4 194,508 + MPMX19_03916 0.13 +3.0 194,509 - MPMX19_03916 0.13 -0.1 194,961 + MPMX19_03916 0.82 +0.3 194,962 - MPMX19_03916 0.82 -0.7 195,202 + MPMX19_03917 0.13 -1.7 195,202 + MPMX19_03917 0.13 +0.6 195,203 - MPMX19_03917 0.13 +0.8 195,203 - MPMX19_03917 0.13 +0.5
Or see this region's nucleotide sequence