Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03401 and MPMX19_03402 are separated by 1 nucleotides MPMX19_03402 and MPMX19_03403 are separated by 1 nucleotides MPMX19_03403 and MPMX19_03404 are separated by 72 nucleotides
MPMX19_03401: MPMX19_03401 - putative ABC transporter ATP-binding protein, at 787,039 to 789,180
_03401
MPMX19_03402: MPMX19_03402 - putative D,D-dipeptide transport system permease protein DdpC, at 789,182 to 790,066
_03402
MPMX19_03403: MPMX19_03403 - Glutathione transport system permease protein GsiC, at 790,068 to 791,024
_03403
MPMX19_03404: MPMX19_03404 - Glutathione-binding protein GsiB, at 791,097 to 792,599
_03404
Position (kb) 790
791
792 Strain fitness (log2 ratio) -2
-1
0
1
2 at 789.074 kb on + strand at 789.074 kb on + strand at 789.074 kb on + strand at 789.074 kb on + strand at 789.074 kb on + strand at 789.075 kb on - strand at 789.075 kb on - strand at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.477 kb on + strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.478 kb on - strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.576 kb on + strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.577 kb on - strand, within MPMX19_03402 at 789.717 kb on + strand, within MPMX19_03402 at 789.717 kb on + strand, within MPMX19_03402 at 789.717 kb on + strand, within MPMX19_03402 at 789.718 kb on - strand, within MPMX19_03402 at 789.740 kb on + strand, within MPMX19_03402 at 789.903 kb on + strand, within MPMX19_03402 at 789.903 kb on + strand, within MPMX19_03402 at 789.903 kb on + strand, within MPMX19_03402 at 789.903 kb on + strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.904 kb on - strand, within MPMX19_03402 at 789.910 kb on - strand, within MPMX19_03402 at 790.114 kb on + strand at 790.114 kb on + strand at 790.114 kb on + strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.115 kb on - strand at 790.147 kb on + strand at 790.148 kb on - strand at 790.238 kb on - strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.390 kb on + strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.391 kb on - strand, within MPMX19_03403 at 790.525 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.552 kb on + strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.553 kb on - strand, within MPMX19_03403 at 790.615 kb on + strand, within MPMX19_03403 at 790.615 kb on + strand, within MPMX19_03403 at 790.831 kb on + strand, within MPMX19_03403 at 790.993 kb on + strand at 790.993 kb on + strand at 790.993 kb on + strand at 790.993 kb on + strand at 790.994 kb on - strand at 790.994 kb on - strand at 791.014 kb on + strand at 791.015 kb on - strand at 791.015 kb on - strand at 791.015 kb on - strand at 791.067 kb on - strand at 791.109 kb on + strand at 791.109 kb on + strand at 791.110 kb on - strand at 791.110 kb on - strand at 791.110 kb on - strand at 791.194 kb on + strand at 791.194 kb on + strand at 791.195 kb on - strand at 791.195 kb on - strand at 791.195 kb on - strand at 791.245 kb on + strand at 791.245 kb on + strand at 791.245 kb on + strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.246 kb on - strand at 791.317 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.320 kb on + strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.321 kb on - strand, within MPMX19_03404 at 791.360 kb on - strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.378 kb on + strand, within MPMX19_03404 at 791.379 kb on - strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.413 kb on + strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.414 kb on - strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.650 kb on + strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.651 kb on - strand, within MPMX19_03404 at 791.653 kb on + strand, within MPMX19_03404 at 791.653 kb on + strand, within MPMX19_03404 at 791.653 kb on + strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.654 kb on - strand, within MPMX19_03404 at 791.992 kb on + strand, within MPMX19_03404 at 791.992 kb on + strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404 at 791.993 kb on - strand, within MPMX19_03404
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 789,074 + +0.1 789,074 + -0.5 789,074 + +0.7 789,074 + -0.5 789,074 + -1.3 789,075 - +1.4 789,075 - +0.7 789,477 + MPMX19_03402 0.33 -0.9 789,477 + MPMX19_03402 0.33 -2.1 789,477 + MPMX19_03402 0.33 -0.8 789,477 + MPMX19_03402 0.33 +0.5 789,477 + MPMX19_03402 0.33 -1.1 789,477 + MPMX19_03402 0.33 -0.7 789,477 + MPMX19_03402 0.33 -0.1 789,478 - MPMX19_03402 0.33 +0.4 789,478 - MPMX19_03402 0.33 +0.8 789,478 - MPMX19_03402 0.33 -0.0 789,478 - MPMX19_03402 0.33 -1.9 789,478 - MPMX19_03402 0.33 +0.3 789,478 - MPMX19_03402 0.33 +0.5 789,478 - MPMX19_03402 0.33 +0.0 789,478 - MPMX19_03402 0.33 +0.4 789,478 - MPMX19_03402 0.33 -0.3 789,478 - MPMX19_03402 0.33 +0.5 789,478 - MPMX19_03402 0.33 +1.1 789,478 - MPMX19_03402 0.33 -0.9 789,576 + MPMX19_03402 0.45 -0.2 789,576 + MPMX19_03402 0.45 +1.1 789,576 + MPMX19_03402 0.45 -0.1 789,576 + MPMX19_03402 0.45 +0.9 789,576 + MPMX19_03402 0.45 -0.3 789,576 + MPMX19_03402 0.45 -0.8 789,576 + MPMX19_03402 0.45 +0.5 789,576 + MPMX19_03402 0.45 +1.0 789,576 + MPMX19_03402 0.45 -1.3 789,576 + MPMX19_03402 0.45 -0.5 789,576 + MPMX19_03402 0.45 -0.7 789,576 + MPMX19_03402 0.45 -1.3 789,576 + MPMX19_03402 0.45 -0.6 789,577 - MPMX19_03402 0.45 +0.1 789,577 - MPMX19_03402 0.45 +0.4 789,577 - MPMX19_03402 0.45 +1.4 789,577 - MPMX19_03402 0.45 -0.7 789,577 - MPMX19_03402 0.45 -1.3 789,577 - MPMX19_03402 0.45 -0.1 789,577 - MPMX19_03402 0.45 +2.0 789,577 - MPMX19_03402 0.45 -0.1 789,577 - MPMX19_03402 0.45 -0.0 789,577 - MPMX19_03402 0.45 +0.1 789,577 - MPMX19_03402 0.45 +1.1 789,717 + MPMX19_03402 0.60 -0.7 789,717 + MPMX19_03402 0.60 -0.1 789,717 + MPMX19_03402 0.60 +0.4 789,718 - MPMX19_03402 0.61 -2.7 789,740 + MPMX19_03402 0.63 -1.3 789,903 + MPMX19_03402 0.81 +0.1 789,903 + MPMX19_03402 0.81 -2.3 789,903 + MPMX19_03402 0.81 +0.3 789,903 + MPMX19_03402 0.81 -0.4 789,904 - MPMX19_03402 0.82 -1.1 789,904 - MPMX19_03402 0.82 +0.1 789,904 - MPMX19_03402 0.82 -0.9 789,904 - MPMX19_03402 0.82 -0.9 789,904 - MPMX19_03402 0.82 +1.6 789,904 - MPMX19_03402 0.82 -2.5 789,904 - MPMX19_03402 0.82 -2.0 789,910 - MPMX19_03402 0.82 -0.9 790,114 + -1.4 790,114 + -0.2 790,114 + +0.2 790,115 - -0.7 790,115 - -1.1 790,115 - -0.4 790,115 - +1.4 790,115 - -0.7 790,115 - -0.1 790,115 - +0.3 790,115 - +0.1 790,115 - -1.6 790,147 + +0.8 790,148 - +0.8 790,238 - MPMX19_03403 0.18 -1.0 790,390 + MPMX19_03403 0.34 -0.3 790,390 + MPMX19_03403 0.34 +0.1 790,390 + MPMX19_03403 0.34 -0.9 790,390 + MPMX19_03403 0.34 -1.6 790,390 + MPMX19_03403 0.34 -0.2 790,390 + MPMX19_03403 0.34 +0.1 790,390 + MPMX19_03403 0.34 +0.0 790,390 + MPMX19_03403 0.34 -0.3 790,390 + MPMX19_03403 0.34 +1.4 790,390 + MPMX19_03403 0.34 -0.9 790,391 - MPMX19_03403 0.34 -0.8 790,391 - MPMX19_03403 0.34 +0.6 790,391 - MPMX19_03403 0.34 +1.7 790,391 - MPMX19_03403 0.34 +0.3 790,391 - MPMX19_03403 0.34 -1.1 790,391 - MPMX19_03403 0.34 +0.8 790,391 - MPMX19_03403 0.34 +0.3 790,391 - MPMX19_03403 0.34 +1.2 790,391 - MPMX19_03403 0.34 +1.8 790,525 + MPMX19_03403 0.48 -1.3 790,552 + MPMX19_03403 0.51 +1.1 790,552 + MPMX19_03403 0.51 -0.7 790,552 + MPMX19_03403 0.51 +2.0 790,552 + MPMX19_03403 0.51 -0.1 790,552 + MPMX19_03403 0.51 -0.7 790,552 + MPMX19_03403 0.51 -0.2 790,552 + MPMX19_03403 0.51 +0.2 790,552 + MPMX19_03403 0.51 +0.4 790,552 + MPMX19_03403 0.51 +1.0 790,552 + MPMX19_03403 0.51 -2.0 790,553 - MPMX19_03403 0.51 +0.0 790,553 - MPMX19_03403 0.51 -0.5 790,553 - MPMX19_03403 0.51 +0.1 790,553 - MPMX19_03403 0.51 +0.7 790,553 - MPMX19_03403 0.51 -0.2 790,553 - MPMX19_03403 0.51 -0.9 790,553 - MPMX19_03403 0.51 +1.1 790,553 - MPMX19_03403 0.51 +1.1 790,553 - MPMX19_03403 0.51 -0.8 790,615 + MPMX19_03403 0.57 -0.4 790,615 + MPMX19_03403 0.57 +0.3 790,831 + MPMX19_03403 0.80 -0.8 790,993 + -0.6 790,993 + -0.9 790,993 + -0.6 790,993 + -1.1 790,994 - -1.4 790,994 - -0.7 791,014 + +1.7 791,015 - -1.8 791,015 - +0.0 791,015 - +0.1 791,067 - -1.1 791,109 + -1.5 791,109 + -1.5 791,110 - +1.0 791,110 - +0.6 791,110 - +0.7 791,194 + -1.1 791,194 + -2.3 791,195 - +0.7 791,195 - -1.0 791,195 - -1.3 791,245 + -0.7 791,245 + -1.3 791,245 + -0.7 791,246 - +0.3 791,246 - +0.9 791,246 - -0.8 791,246 - -0.2 791,246 - -1.0 791,246 - -1.1 791,246 - -1.5 791,246 - +0.4 791,246 - -1.1 791,246 - -1.3 791,246 - +0.3 791,317 + MPMX19_03404 0.15 +2.7 791,320 + MPMX19_03404 0.15 -0.6 791,320 + MPMX19_03404 0.15 -0.6 791,320 + MPMX19_03404 0.15 -0.9 791,320 + MPMX19_03404 0.15 -0.0 791,320 + MPMX19_03404 0.15 +0.5 791,321 - MPMX19_03404 0.15 -1.3 791,321 - MPMX19_03404 0.15 -0.7 791,321 - MPMX19_03404 0.15 +0.9 791,321 - MPMX19_03404 0.15 +0.3 791,360 - MPMX19_03404 0.17 +0.8 791,378 + MPMX19_03404 0.19 -1.5 791,378 + MPMX19_03404 0.19 -0.9 791,378 + MPMX19_03404 0.19 +0.7 791,378 + MPMX19_03404 0.19 -0.5 791,379 - MPMX19_03404 0.19 -1.3 791,413 + MPMX19_03404 0.21 -0.2 791,413 + MPMX19_03404 0.21 -0.3 791,413 + MPMX19_03404 0.21 -0.1 791,413 + MPMX19_03404 0.21 +0.0 791,414 - MPMX19_03404 0.21 -0.9 791,414 - MPMX19_03404 0.21 -1.6 791,414 - MPMX19_03404 0.21 -0.1 791,414 - MPMX19_03404 0.21 -1.0 791,414 - MPMX19_03404 0.21 -1.3 791,414 - MPMX19_03404 0.21 +0.2 791,414 - MPMX19_03404 0.21 -0.7 791,650 + MPMX19_03404 0.37 -0.7 791,650 + MPMX19_03404 0.37 -0.3 791,650 + MPMX19_03404 0.37 -0.1 791,650 + MPMX19_03404 0.37 -1.1 791,650 + MPMX19_03404 0.37 -0.3 791,650 + MPMX19_03404 0.37 +0.3 791,650 + MPMX19_03404 0.37 -0.8 791,650 + MPMX19_03404 0.37 -1.7 791,650 + MPMX19_03404 0.37 -2.4 791,650 + MPMX19_03404 0.37 -0.9 791,650 + MPMX19_03404 0.37 -1.0 791,650 + MPMX19_03404 0.37 +1.1 791,650 + MPMX19_03404 0.37 -0.7 791,650 + MPMX19_03404 0.37 +0.4 791,651 - MPMX19_03404 0.37 -0.5 791,651 - MPMX19_03404 0.37 -0.4 791,651 - MPMX19_03404 0.37 -0.7 791,651 - MPMX19_03404 0.37 +0.7 791,651 - MPMX19_03404 0.37 -1.0 791,651 - MPMX19_03404 0.37 -0.9 791,651 - MPMX19_03404 0.37 +0.6 791,651 - MPMX19_03404 0.37 +0.3 791,651 - MPMX19_03404 0.37 -1.1 791,651 - MPMX19_03404 0.37 -1.1 791,651 - MPMX19_03404 0.37 -0.1 791,651 - MPMX19_03404 0.37 +0.9 791,651 - MPMX19_03404 0.37 -0.3 791,651 - MPMX19_03404 0.37 +0.1 791,651 - MPMX19_03404 0.37 -0.8 791,653 + MPMX19_03404 0.37 +0.2 791,653 + MPMX19_03404 0.37 +0.0 791,653 + MPMX19_03404 0.37 +0.3 791,654 - MPMX19_03404 0.37 +0.1 791,654 - MPMX19_03404 0.37 +0.3 791,654 - MPMX19_03404 0.37 -2.0 791,654 - MPMX19_03404 0.37 +0.9 791,654 - MPMX19_03404 0.37 +0.1 791,992 + MPMX19_03404 0.60 -2.2 791,992 + MPMX19_03404 0.60 -0.0 791,993 - MPMX19_03404 0.60 -1.7 791,993 - MPMX19_03404 0.60 -0.4 791,993 - MPMX19_03404 0.60 -0.2 791,993 - MPMX19_03404 0.60 -0.8 791,993 - MPMX19_03404 0.60 +0.2 791,993 - MPMX19_03404 0.60 +0.1
Or see this region's nucleotide sequence