Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03330 and MPMX19_03331 are separated by 17 nucleotides MPMX19_03331 and MPMX19_03332 overlap by 4 nucleotides
MPMX19_03330: MPMX19_03330 - hypothetical protein, at 680,513 to 683,845
_03330
MPMX19_03331: MPMX19_03331 - hypothetical protein, at 683,863 to 684,597
_03331
MPMX19_03332: MPMX19_03332 - hypothetical protein, at 684,594 to 687,026
_03332
Position (kb) 683
684
685 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 683.450 kb on + strand, within MPMX19_03330 at 683.451 kb on - strand, within MPMX19_03330 at 683.451 kb on - strand, within MPMX19_03330 at 683.642 kb on + strand at 683.643 kb on - strand at 683.864 kb on + strand at 683.864 kb on + strand at 683.865 kb on - strand at 683.946 kb on + strand, within MPMX19_03331 at 684.069 kb on + strand, within MPMX19_03331 at 684.069 kb on + strand, within MPMX19_03331 at 684.180 kb on - strand, within MPMX19_03331 at 684.180 kb on - strand, within MPMX19_03331 at 684.180 kb on - strand, within MPMX19_03331 at 684.458 kb on + strand, within MPMX19_03331 at 684.458 kb on + strand, within MPMX19_03331 at 684.458 kb on + strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.459 kb on - strand, within MPMX19_03331 at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.775 kb on + strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.776 kb on - strand at 684.830 kb on - strand at 684.830 kb on - strand at 685.021 kb on + strand, within MPMX19_03332 at 685.021 kb on + strand, within MPMX19_03332 at 685.022 kb on - strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.039 kb on + strand, within MPMX19_03332 at 685.040 kb on - strand, within MPMX19_03332 at 685.040 kb on - strand, within MPMX19_03332 at 685.040 kb on - strand, within MPMX19_03332 at 685.040 kb on - strand, within MPMX19_03332 at 685.105 kb on + strand, within MPMX19_03332 at 685.106 kb on - strand, within MPMX19_03332 at 685.108 kb on + strand, within MPMX19_03332 at 685.108 kb on + strand, within MPMX19_03332 at 685.109 kb on - strand, within MPMX19_03332 at 685.109 kb on - strand, within MPMX19_03332 at 685.109 kb on - strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.396 kb on + strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.397 kb on - strand, within MPMX19_03332 at 685.420 kb on + strand, within MPMX19_03332 at 685.420 kb on + strand, within MPMX19_03332 at 685.421 kb on - strand, within MPMX19_03332 at 685.468 kb on + strand, within MPMX19_03332
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 683,450 + MPMX19_03330 0.88 -1.8 683,451 - MPMX19_03330 0.88 -0.3 683,451 - MPMX19_03330 0.88 -0.7 683,642 + +1.4 683,643 - -0.3 683,864 + +1.1 683,864 + -0.5 683,865 - -0.0 683,946 + MPMX19_03331 0.11 +0.4 684,069 + MPMX19_03331 0.28 -0.4 684,069 + MPMX19_03331 0.28 +0.4 684,180 - MPMX19_03331 0.43 -1.9 684,180 - MPMX19_03331 0.43 +0.4 684,180 - MPMX19_03331 0.43 +0.2 684,458 + MPMX19_03331 0.81 -0.8 684,458 + MPMX19_03331 0.81 -0.3 684,458 + MPMX19_03331 0.81 +1.4 684,459 - MPMX19_03331 0.81 +0.7 684,459 - MPMX19_03331 0.81 +0.2 684,459 - MPMX19_03331 0.81 +0.7 684,459 - MPMX19_03331 0.81 -1.2 684,459 - MPMX19_03331 0.81 +2.0 684,459 - MPMX19_03331 0.81 -1.3 684,459 - MPMX19_03331 0.81 -0.7 684,775 + -2.6 684,775 + +0.2 684,775 + -1.6 684,775 + -1.2 684,775 + -0.1 684,775 + -1.3 684,775 + +2.2 684,775 + -0.2 684,775 + -0.3 684,776 - +1.0 684,776 - -0.2 684,776 - -0.1 684,776 - +1.7 684,776 - -2.6 684,776 - +0.9 684,776 - -0.7 684,776 - -0.5 684,830 - -0.8 684,830 - -0.7 685,021 + MPMX19_03332 0.18 +0.2 685,021 + MPMX19_03332 0.18 -1.0 685,022 - MPMX19_03332 0.18 -1.3 685,039 + MPMX19_03332 0.18 -1.9 685,039 + MPMX19_03332 0.18 -1.2 685,039 + MPMX19_03332 0.18 -1.8 685,039 + MPMX19_03332 0.18 +0.3 685,039 + MPMX19_03332 0.18 -0.6 685,039 + MPMX19_03332 0.18 +0.5 685,039 + MPMX19_03332 0.18 -2.1 685,040 - MPMX19_03332 0.18 +0.7 685,040 - MPMX19_03332 0.18 -1.1 685,040 - MPMX19_03332 0.18 +0.1 685,040 - MPMX19_03332 0.18 -3.0 685,105 + MPMX19_03332 0.21 -1.8 685,106 - MPMX19_03332 0.21 -0.9 685,108 + MPMX19_03332 0.21 +0.1 685,108 + MPMX19_03332 0.21 -1.0 685,109 - MPMX19_03332 0.21 -0.5 685,109 - MPMX19_03332 0.21 +1.1 685,109 - MPMX19_03332 0.21 -0.7 685,396 + MPMX19_03332 0.33 -0.0 685,396 + MPMX19_03332 0.33 +0.5 685,396 + MPMX19_03332 0.33 -0.4 685,396 + MPMX19_03332 0.33 +0.5 685,396 + MPMX19_03332 0.33 -0.7 685,396 + MPMX19_03332 0.33 -0.9 685,396 + MPMX19_03332 0.33 -0.7 685,396 + MPMX19_03332 0.33 +0.1 685,396 + MPMX19_03332 0.33 +0.7 685,396 + MPMX19_03332 0.33 +0.1 685,396 + MPMX19_03332 0.33 +0.2 685,396 + MPMX19_03332 0.33 -0.1 685,396 + MPMX19_03332 0.33 +1.1 685,396 + MPMX19_03332 0.33 +0.3 685,396 + MPMX19_03332 0.33 -0.2 685,396 + MPMX19_03332 0.33 -0.5 685,396 + MPMX19_03332 0.33 -2.0 685,396 + MPMX19_03332 0.33 +0.7 685,396 + MPMX19_03332 0.33 -1.7 685,396 + MPMX19_03332 0.33 -0.2 685,396 + MPMX19_03332 0.33 +0.1 685,396 + MPMX19_03332 0.33 +0.1 685,396 + MPMX19_03332 0.33 +0.3 685,396 + MPMX19_03332 0.33 -1.1 685,396 + MPMX19_03332 0.33 +0.3 685,396 + MPMX19_03332 0.33 -0.7 685,397 - MPMX19_03332 0.33 +0.7 685,397 - MPMX19_03332 0.33 +1.0 685,397 - MPMX19_03332 0.33 -0.9 685,397 - MPMX19_03332 0.33 -0.8 685,397 - MPMX19_03332 0.33 +0.4 685,397 - MPMX19_03332 0.33 -0.0 685,397 - MPMX19_03332 0.33 -0.8 685,397 - MPMX19_03332 0.33 -0.8 685,397 - MPMX19_03332 0.33 -0.1 685,397 - MPMX19_03332 0.33 -0.5 685,397 - MPMX19_03332 0.33 -0.3 685,397 - MPMX19_03332 0.33 -2.2 685,397 - MPMX19_03332 0.33 -0.7 685,397 - MPMX19_03332 0.33 +0.9 685,397 - MPMX19_03332 0.33 -0.4 685,397 - MPMX19_03332 0.33 +0.7 685,397 - MPMX19_03332 0.33 +0.8 685,397 - MPMX19_03332 0.33 +1.0 685,397 - MPMX19_03332 0.33 -0.8 685,397 - MPMX19_03332 0.33 -1.1 685,397 - MPMX19_03332 0.33 -0.7 685,420 + MPMX19_03332 0.34 -0.5 685,420 + MPMX19_03332 0.34 -1.8 685,421 - MPMX19_03332 0.34 -0.0 685,468 + MPMX19_03332 0.36 -0.7
Or see this region's nucleotide sequence