Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03307 and MPMX19_03308 are separated by 42 nucleotides MPMX19_03308 and MPMX19_03309 are separated by 4 nucleotides
MPMX19_03307: MPMX19_03307 - Galactarate dehydratase (L-threo-forming), at 653,660 to 655,186
_03307
MPMX19_03308: MPMX19_03308 - hypothetical protein, at 655,229 to 656,044
_03308
MPMX19_03309: MPMX19_03309 - Pyridoxal 4-dehydrogenase, at 656,049 to 657,074
_03309
Position (kb)
655
656
657 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 654.255 kb on + strand, within MPMX19_03307 at 654.255 kb on + strand, within MPMX19_03307 at 654.255 kb on + strand, within MPMX19_03307 at 654.352 kb on - strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.810 kb on + strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.811 kb on - strand, within MPMX19_03307 at 654.999 kb on + strand, within MPMX19_03307 at 654.999 kb on + strand, within MPMX19_03307 at 654.999 kb on + strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.000 kb on - strand, within MPMX19_03307 at 655.242 kb on + strand at 655.243 kb on - strand at 655.410 kb on + strand, within MPMX19_03308 at 655.410 kb on + strand, within MPMX19_03308 at 655.410 kb on + strand, within MPMX19_03308 at 655.410 kb on + strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.411 kb on - strand, within MPMX19_03308 at 655.666 kb on + strand, within MPMX19_03308 at 655.667 kb on - strand, within MPMX19_03308 at 656.314 kb on + strand, within MPMX19_03309 at 656.314 kb on + strand, within MPMX19_03309 at 656.314 kb on + strand, within MPMX19_03309 at 656.315 kb on - strand, within MPMX19_03309 at 656.437 kb on + strand, within MPMX19_03309 at 656.437 kb on + strand, within MPMX19_03309 at 656.437 kb on + strand, within MPMX19_03309 at 656.438 kb on - strand, within MPMX19_03309 at 656.456 kb on + strand, within MPMX19_03309 at 656.456 kb on + strand, within MPMX19_03309 at 656.456 kb on + strand, within MPMX19_03309 at 656.456 kb on + strand, within MPMX19_03309 at 656.456 kb on + strand, within MPMX19_03309 at 656.456 kb on + strand, within MPMX19_03309 at 656.456 kb on + strand, within MPMX19_03309 at 656.456 kb on + strand, within MPMX19_03309 at 656.456 kb on + strand, within MPMX19_03309 at 656.456 kb on + strand, within MPMX19_03309 at 656.457 kb on - strand, within MPMX19_03309 at 656.457 kb on - strand, within MPMX19_03309 at 656.457 kb on - strand, within MPMX19_03309 at 656.457 kb on - strand, within MPMX19_03309 at 656.457 kb on - strand, within MPMX19_03309 at 656.457 kb on - strand, within MPMX19_03309 at 656.644 kb on + strand, within MPMX19_03309 at 656.644 kb on + strand, within MPMX19_03309 at 656.644 kb on + strand, within MPMX19_03309 at 656.644 kb on + strand, within MPMX19_03309 at 656.644 kb on + strand, within MPMX19_03309 at 656.644 kb on + strand, within MPMX19_03309 at 656.645 kb on - strand, within MPMX19_03309 at 656.645 kb on - strand, within MPMX19_03309 at 656.645 kb on - strand, within MPMX19_03309 at 656.645 kb on - strand, within MPMX19_03309 at 656.645 kb on - strand, within MPMX19_03309 at 656.645 kb on - strand, within MPMX19_03309 at 656.719 kb on + strand, within MPMX19_03309 at 656.719 kb on + strand, within MPMX19_03309 at 656.719 kb on + strand, within MPMX19_03309 at 656.719 kb on + strand, within MPMX19_03309 at 656.720 kb on - strand, within MPMX19_03309 at 656.720 kb on - strand, within MPMX19_03309 at 656.720 kb on - strand, within MPMX19_03309 at 656.725 kb on + strand, within MPMX19_03309 at 656.725 kb on + strand, within MPMX19_03309 at 656.725 kb on + strand, within MPMX19_03309 at 656.725 kb on + strand, within MPMX19_03309 at 656.725 kb on + strand, within MPMX19_03309 at 656.725 kb on + strand, within MPMX19_03309 at 656.725 kb on + strand, within MPMX19_03309 at 656.725 kb on + strand, within MPMX19_03309 at 656.725 kb on + strand, within MPMX19_03309 at 656.726 kb on - strand, within MPMX19_03309 at 656.726 kb on - strand, within MPMX19_03309 at 656.899 kb on + strand, within MPMX19_03309 at 656.900 kb on - strand, within MPMX19_03309 at 656.900 kb on - strand, within MPMX19_03309 at 656.902 kb on + strand, within MPMX19_03309 at 656.902 kb on + strand, within MPMX19_03309 at 656.903 kb on - strand, within MPMX19_03309 at 656.920 kb on + strand, within MPMX19_03309
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 654,255 + MPMX19_03307 0.39 -0.1 654,255 + MPMX19_03307 0.39 +0.9 654,255 + MPMX19_03307 0.39 +0.8 654,352 - MPMX19_03307 0.45 -2.1 654,810 + MPMX19_03307 0.75 -0.7 654,810 + MPMX19_03307 0.75 +0.4 654,810 + MPMX19_03307 0.75 -1.3 654,810 + MPMX19_03307 0.75 -1.0 654,810 + MPMX19_03307 0.75 -2.7 654,810 + MPMX19_03307 0.75 -0.5 654,810 + MPMX19_03307 0.75 +0.8 654,810 + MPMX19_03307 0.75 -0.6 654,810 + MPMX19_03307 0.75 -1.7 654,810 + MPMX19_03307 0.75 +0.2 654,810 + MPMX19_03307 0.75 -1.0 654,810 + MPMX19_03307 0.75 -1.5 654,811 - MPMX19_03307 0.75 -0.9 654,811 - MPMX19_03307 0.75 -1.9 654,811 - MPMX19_03307 0.75 -0.2 654,811 - MPMX19_03307 0.75 -1.1 654,811 - MPMX19_03307 0.75 -0.6 654,811 - MPMX19_03307 0.75 +0.3 654,811 - MPMX19_03307 0.75 -0.9 654,811 - MPMX19_03307 0.75 -0.3 654,999 + MPMX19_03307 0.88 +1.3 654,999 + MPMX19_03307 0.88 +0.1 654,999 + MPMX19_03307 0.88 -0.2 655,000 - MPMX19_03307 0.88 +0.3 655,000 - MPMX19_03307 0.88 +0.7 655,000 - MPMX19_03307 0.88 -1.1 655,000 - MPMX19_03307 0.88 -0.8 655,000 - MPMX19_03307 0.88 +0.1 655,242 + +1.3 655,243 - -1.1 655,410 + MPMX19_03308 0.22 -0.1 655,410 + MPMX19_03308 0.22 -1.5 655,410 + MPMX19_03308 0.22 -1.1 655,410 + MPMX19_03308 0.22 +0.6 655,411 - MPMX19_03308 0.22 -0.1 655,411 - MPMX19_03308 0.22 +0.5 655,411 - MPMX19_03308 0.22 +1.7 655,411 - MPMX19_03308 0.22 -0.1 655,411 - MPMX19_03308 0.22 +0.5 655,411 - MPMX19_03308 0.22 +0.7 655,666 + MPMX19_03308 0.54 +0.3 655,667 - MPMX19_03308 0.54 +0.3 656,314 + MPMX19_03309 0.26 +1.1 656,314 + MPMX19_03309 0.26 +0.8 656,314 + MPMX19_03309 0.26 -0.3 656,315 - MPMX19_03309 0.26 +1.3 656,437 + MPMX19_03309 0.38 -1.1 656,437 + MPMX19_03309 0.38 -0.9 656,437 + MPMX19_03309 0.38 +0.0 656,438 - MPMX19_03309 0.38 -0.5 656,456 + MPMX19_03309 0.40 -0.4 656,456 + MPMX19_03309 0.40 -0.7 656,456 + MPMX19_03309 0.40 +0.5 656,456 + MPMX19_03309 0.40 -2.0 656,456 + MPMX19_03309 0.40 +0.3 656,456 + MPMX19_03309 0.40 -0.7 656,456 + MPMX19_03309 0.40 +0.1 656,456 + MPMX19_03309 0.40 +0.8 656,456 + MPMX19_03309 0.40 -1.5 656,456 + MPMX19_03309 0.40 -0.3 656,457 - MPMX19_03309 0.40 -0.5 656,457 - MPMX19_03309 0.40 -1.5 656,457 - MPMX19_03309 0.40 -1.0 656,457 - MPMX19_03309 0.40 -0.9 656,457 - MPMX19_03309 0.40 -1.0 656,457 - MPMX19_03309 0.40 +0.7 656,644 + MPMX19_03309 0.58 -0.7 656,644 + MPMX19_03309 0.58 -0.9 656,644 + MPMX19_03309 0.58 +0.7 656,644 + MPMX19_03309 0.58 -1.7 656,644 + MPMX19_03309 0.58 -0.0 656,644 + MPMX19_03309 0.58 -2.1 656,645 - MPMX19_03309 0.58 -0.7 656,645 - MPMX19_03309 0.58 +1.0 656,645 - MPMX19_03309 0.58 -1.7 656,645 - MPMX19_03309 0.58 -1.8 656,645 - MPMX19_03309 0.58 +1.2 656,645 - MPMX19_03309 0.58 +2.1 656,719 + MPMX19_03309 0.65 +0.3 656,719 + MPMX19_03309 0.65 -1.1 656,719 + MPMX19_03309 0.65 +2.3 656,719 + MPMX19_03309 0.65 +0.7 656,720 - MPMX19_03309 0.65 -0.2 656,720 - MPMX19_03309 0.65 +0.3 656,720 - MPMX19_03309 0.65 -0.8 656,725 + MPMX19_03309 0.66 +0.3 656,725 + MPMX19_03309 0.66 -0.2 656,725 + MPMX19_03309 0.66 -0.4 656,725 + MPMX19_03309 0.66 -0.6 656,725 + MPMX19_03309 0.66 -1.2 656,725 + MPMX19_03309 0.66 +0.3 656,725 + MPMX19_03309 0.66 -1.9 656,725 + MPMX19_03309 0.66 -0.1 656,725 + MPMX19_03309 0.66 -2.1 656,726 - MPMX19_03309 0.66 -0.5 656,726 - MPMX19_03309 0.66 -0.3 656,899 + MPMX19_03309 0.83 -1.2 656,900 - MPMX19_03309 0.83 +0.3 656,900 - MPMX19_03309 0.83 +0.7 656,902 + MPMX19_03309 0.83 +0.6 656,902 + MPMX19_03309 0.83 -1.1 656,903 - MPMX19_03309 0.83 -0.4 656,920 + MPMX19_03309 0.85 -1.2
Or see this region's nucleotide sequence