Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03264 and MPMX19_03265 overlap by 4 nucleotides MPMX19_03265 and MPMX19_03266 are separated by 75 nucleotides MPMX19_03266 and MPMX19_03267 are separated by 47 nucleotides
MPMX19_03264: MPMX19_03264 - hypothetical protein, at 606,053 to 608,230
_03264
MPMX19_03265: MPMX19_03265 - Spermidine/putrescine import ATP-binding protein PotA, at 608,227 to 609,399
_03265
MPMX19_03266: MPMX19_03266 - Inositol-1-monophosphatase, at 609,475 to 610,251
_03266
MPMX19_03267: MPMX19_03267 - Periplasmic AppA protein, at 610,299 to 611,651
_03267
Position (kb) 608
609
610 Strain fitness (log2 ratio) -2
-1
0
1
2 at 607.322 kb on + strand, within MPMX19_03264 at 607.322 kb on + strand, within MPMX19_03264 at 607.322 kb on + strand, within MPMX19_03264 at 607.323 kb on - strand, within MPMX19_03264 at 607.436 kb on + strand, within MPMX19_03264 at 607.437 kb on - strand, within MPMX19_03264 at 607.437 kb on - strand, within MPMX19_03264 at 607.437 kb on - strand, within MPMX19_03264 at 607.506 kb on - strand, within MPMX19_03264 at 607.506 kb on - strand, within MPMX19_03264 at 607.643 kb on + strand, within MPMX19_03264 at 607.644 kb on - strand, within MPMX19_03264 at 607.739 kb on + strand, within MPMX19_03264 at 607.739 kb on + strand, within MPMX19_03264 at 607.739 kb on + strand, within MPMX19_03264 at 607.739 kb on + strand, within MPMX19_03264 at 607.739 kb on + strand, within MPMX19_03264 at 607.739 kb on + strand, within MPMX19_03264 at 607.974 kb on - strand, within MPMX19_03264 at 607.974 kb on - strand, within MPMX19_03264 at 608.033 kb on + strand at 608.033 kb on + strand at 608.033 kb on + strand at 608.033 kb on + strand at 608.034 kb on - strand at 608.034 kb on - strand at 608.034 kb on - strand at 608.034 kb on - strand at 608.051 kb on + strand at 608.051 kb on + strand at 608.051 kb on + strand at 608.051 kb on + strand at 608.051 kb on + strand at 608.051 kb on + strand at 608.052 kb on - strand at 608.052 kb on - strand at 608.052 kb on - strand at 608.052 kb on - strand at 608.052 kb on - strand at 608.052 kb on - strand at 608.081 kb on + strand at 608.082 kb on - strand at 608.099 kb on + strand at 608.099 kb on + strand at 608.099 kb on + strand at 608.100 kb on - strand at 608.100 kb on - strand at 608.345 kb on - strand, within MPMX19_03265 at 608.557 kb on + strand, within MPMX19_03265 at 608.557 kb on + strand, within MPMX19_03265 at 608.557 kb on + strand, within MPMX19_03265 at 608.557 kb on + strand, within MPMX19_03265 at 608.557 kb on + strand, within MPMX19_03265 at 608.558 kb on - strand, within MPMX19_03265 at 608.558 kb on - strand, within MPMX19_03265 at 608.558 kb on - strand, within MPMX19_03265 at 608.558 kb on - strand, within MPMX19_03265 at 608.558 kb on - strand, within MPMX19_03265 at 608.600 kb on - strand, within MPMX19_03265 at 608.600 kb on - strand, within MPMX19_03265 at 608.660 kb on + strand, within MPMX19_03265 at 608.660 kb on + strand, within MPMX19_03265 at 608.660 kb on + strand, within MPMX19_03265 at 608.660 kb on + strand, within MPMX19_03265 at 608.660 kb on + strand, within MPMX19_03265 at 608.661 kb on - strand, within MPMX19_03265 at 608.661 kb on - strand, within MPMX19_03265 at 608.661 kb on - strand, within MPMX19_03265 at 608.872 kb on + strand, within MPMX19_03265 at 608.872 kb on + strand, within MPMX19_03265 at 608.872 kb on + strand, within MPMX19_03265 at 608.872 kb on + strand, within MPMX19_03265 at 608.872 kb on + strand, within MPMX19_03265 at 608.872 kb on + strand, within MPMX19_03265 at 608.872 kb on + strand, within MPMX19_03265 at 608.873 kb on - strand, within MPMX19_03265 at 608.873 kb on - strand, within MPMX19_03265 at 608.873 kb on - strand, within MPMX19_03265 at 608.873 kb on - strand, within MPMX19_03265 at 608.971 kb on + strand, within MPMX19_03265 at 608.972 kb on - strand, within MPMX19_03265 at 609.241 kb on + strand, within MPMX19_03265 at 609.241 kb on + strand, within MPMX19_03265 at 609.241 kb on + strand, within MPMX19_03265 at 609.241 kb on + strand, within MPMX19_03265 at 609.241 kb on + strand, within MPMX19_03265 at 609.241 kb on + strand, within MPMX19_03265 at 609.242 kb on - strand, within MPMX19_03265 at 609.242 kb on - strand, within MPMX19_03265 at 609.242 kb on - strand, within MPMX19_03265 at 609.242 kb on - strand, within MPMX19_03265 at 609.262 kb on + strand, within MPMX19_03265 at 609.262 kb on + strand, within MPMX19_03265 at 609.262 kb on + strand, within MPMX19_03265 at 609.263 kb on - strand, within MPMX19_03265 at 609.263 kb on - strand, within MPMX19_03265 at 609.263 kb on - strand, within MPMX19_03265 at 609.263 kb on - strand, within MPMX19_03265 at 609.263 kb on - strand, within MPMX19_03265 at 609.263 kb on - strand, within MPMX19_03265 at 609.263 kb on - strand, within MPMX19_03265 at 609.263 kb on - strand, within MPMX19_03265 at 609.263 kb on - strand, within MPMX19_03265 at 609.263 kb on - strand, within MPMX19_03265 at 609.263 kb on - strand, within MPMX19_03265 at 609.739 kb on + strand, within MPMX19_03266 at 609.739 kb on + strand, within MPMX19_03266 at 609.739 kb on + strand, within MPMX19_03266 at 609.739 kb on + strand, within MPMX19_03266 at 609.739 kb on + strand, within MPMX19_03266 at 609.739 kb on + strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.740 kb on - strand, within MPMX19_03266 at 609.814 kb on + strand, within MPMX19_03266 at 609.814 kb on + strand, within MPMX19_03266 at 609.814 kb on + strand, within MPMX19_03266 at 609.814 kb on + strand, within MPMX19_03266 at 609.814 kb on + strand, within MPMX19_03266 at 609.814 kb on + strand, within MPMX19_03266 at 609.814 kb on + strand, within MPMX19_03266 at 609.814 kb on + strand, within MPMX19_03266 at 609.814 kb on + strand, within MPMX19_03266 at 609.814 kb on + strand, within MPMX19_03266 at 609.814 kb on + strand, within MPMX19_03266 at 609.815 kb on - strand, within MPMX19_03266 at 609.815 kb on - strand, within MPMX19_03266 at 609.815 kb on - strand, within MPMX19_03266 at 609.815 kb on - strand, within MPMX19_03266 at 609.815 kb on - strand, within MPMX19_03266 at 609.815 kb on - strand, within MPMX19_03266 at 609.815 kb on - strand, within MPMX19_03266 at 609.815 kb on - strand, within MPMX19_03266 at 610.066 kb on + strand, within MPMX19_03266 at 610.066 kb on + strand, within MPMX19_03266 at 610.066 kb on + strand, within MPMX19_03266 at 610.067 kb on - strand, within MPMX19_03266 at 610.067 kb on - strand, within MPMX19_03266
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 607,322 + MPMX19_03264 0.58 +0.5 607,322 + MPMX19_03264 0.58 +0.5 607,322 + MPMX19_03264 0.58 -0.3 607,323 - MPMX19_03264 0.58 -1.3 607,436 + MPMX19_03264 0.63 +1.0 607,437 - MPMX19_03264 0.64 +0.4 607,437 - MPMX19_03264 0.64 +0.1 607,437 - MPMX19_03264 0.64 -0.1 607,506 - MPMX19_03264 0.67 -1.0 607,506 - MPMX19_03264 0.67 -0.9 607,643 + MPMX19_03264 0.73 -0.1 607,644 - MPMX19_03264 0.73 -2.6 607,739 + MPMX19_03264 0.77 -0.1 607,739 + MPMX19_03264 0.77 +0.9 607,739 + MPMX19_03264 0.77 -0.6 607,739 + MPMX19_03264 0.77 -2.2 607,739 + MPMX19_03264 0.77 -0.4 607,739 + MPMX19_03264 0.77 +0.0 607,974 - MPMX19_03264 0.88 +1.5 607,974 - MPMX19_03264 0.88 -1.6 608,033 + -0.5 608,033 + -1.1 608,033 + -0.5 608,033 + +0.3 608,034 - -0.9 608,034 - +0.2 608,034 - -0.4 608,034 - -0.3 608,051 + -1.3 608,051 + -0.7 608,051 + +1.0 608,051 + -0.7 608,051 + -1.6 608,051 + +2.0 608,052 - +0.2 608,052 - -1.8 608,052 - -1.1 608,052 - +0.4 608,052 - +1.3 608,052 - -0.3 608,081 + -2.1 608,082 - +1.3 608,099 + -0.4 608,099 + +0.3 608,099 + -0.2 608,100 - -0.9 608,100 - -1.1 608,345 - MPMX19_03265 0.10 -0.6 608,557 + MPMX19_03265 0.28 +1.4 608,557 + MPMX19_03265 0.28 +0.3 608,557 + MPMX19_03265 0.28 +0.5 608,557 + MPMX19_03265 0.28 +0.7 608,557 + MPMX19_03265 0.28 -2.3 608,558 - MPMX19_03265 0.28 +1.0 608,558 - MPMX19_03265 0.28 -1.8 608,558 - MPMX19_03265 0.28 +0.8 608,558 - MPMX19_03265 0.28 +0.4 608,558 - MPMX19_03265 0.28 +1.7 608,600 - MPMX19_03265 0.32 -0.1 608,600 - MPMX19_03265 0.32 -0.5 608,660 + MPMX19_03265 0.37 -1.3 608,660 + MPMX19_03265 0.37 -0.4 608,660 + MPMX19_03265 0.37 -0.6 608,660 + MPMX19_03265 0.37 -0.3 608,660 + MPMX19_03265 0.37 +1.5 608,661 - MPMX19_03265 0.37 -0.1 608,661 - MPMX19_03265 0.37 -0.6 608,661 - MPMX19_03265 0.37 +0.1 608,872 + MPMX19_03265 0.55 -0.5 608,872 + MPMX19_03265 0.55 +1.2 608,872 + MPMX19_03265 0.55 +0.9 608,872 + MPMX19_03265 0.55 +0.1 608,872 + MPMX19_03265 0.55 +1.7 608,872 + MPMX19_03265 0.55 -0.1 608,872 + MPMX19_03265 0.55 -0.8 608,873 - MPMX19_03265 0.55 -1.6 608,873 - MPMX19_03265 0.55 -1.8 608,873 - MPMX19_03265 0.55 +0.6 608,873 - MPMX19_03265 0.55 +0.4 608,971 + MPMX19_03265 0.63 +0.7 608,972 - MPMX19_03265 0.64 +0.5 609,241 + MPMX19_03265 0.86 +1.2 609,241 + MPMX19_03265 0.86 -0.6 609,241 + MPMX19_03265 0.86 +0.8 609,241 + MPMX19_03265 0.86 -0.5 609,241 + MPMX19_03265 0.86 -0.2 609,241 + MPMX19_03265 0.86 +0.5 609,242 - MPMX19_03265 0.87 +0.7 609,242 - MPMX19_03265 0.87 -1.3 609,242 - MPMX19_03265 0.87 -0.1 609,242 - MPMX19_03265 0.87 +0.9 609,262 + MPMX19_03265 0.88 -2.0 609,262 + MPMX19_03265 0.88 +0.3 609,262 + MPMX19_03265 0.88 -1.7 609,263 - MPMX19_03265 0.88 -0.2 609,263 - MPMX19_03265 0.88 -1.8 609,263 - MPMX19_03265 0.88 +1.7 609,263 - MPMX19_03265 0.88 +0.5 609,263 - MPMX19_03265 0.88 +0.6 609,263 - MPMX19_03265 0.88 -0.4 609,263 - MPMX19_03265 0.88 -1.1 609,263 - MPMX19_03265 0.88 -0.5 609,263 - MPMX19_03265 0.88 +1.9 609,263 - MPMX19_03265 0.88 +0.1 609,263 - MPMX19_03265 0.88 -1.1 609,739 + MPMX19_03266 0.34 -1.1 609,739 + MPMX19_03266 0.34 +0.5 609,739 + MPMX19_03266 0.34 -0.1 609,739 + MPMX19_03266 0.34 -0.2 609,739 + MPMX19_03266 0.34 -1.2 609,739 + MPMX19_03266 0.34 -0.3 609,740 - MPMX19_03266 0.34 -0.6 609,740 - MPMX19_03266 0.34 -1.3 609,740 - MPMX19_03266 0.34 -0.1 609,740 - MPMX19_03266 0.34 -0.8 609,740 - MPMX19_03266 0.34 -0.5 609,740 - MPMX19_03266 0.34 +0.3 609,740 - MPMX19_03266 0.34 -0.1 609,740 - MPMX19_03266 0.34 -1.2 609,740 - MPMX19_03266 0.34 +1.5 609,740 - MPMX19_03266 0.34 -1.9 609,740 - MPMX19_03266 0.34 +2.4 609,740 - MPMX19_03266 0.34 -0.0 609,740 - MPMX19_03266 0.34 +1.4 609,814 + MPMX19_03266 0.44 -0.2 609,814 + MPMX19_03266 0.44 -1.6 609,814 + MPMX19_03266 0.44 +0.2 609,814 + MPMX19_03266 0.44 -0.3 609,814 + MPMX19_03266 0.44 +0.4 609,814 + MPMX19_03266 0.44 -1.9 609,814 + MPMX19_03266 0.44 -0.4 609,814 + MPMX19_03266 0.44 +2.6 609,814 + MPMX19_03266 0.44 -0.4 609,814 + MPMX19_03266 0.44 -0.8 609,814 + MPMX19_03266 0.44 +0.0 609,815 - MPMX19_03266 0.44 +1.5 609,815 - MPMX19_03266 0.44 -0.2 609,815 - MPMX19_03266 0.44 +0.7 609,815 - MPMX19_03266 0.44 -0.7 609,815 - MPMX19_03266 0.44 -1.8 609,815 - MPMX19_03266 0.44 -0.8 609,815 - MPMX19_03266 0.44 +0.9 609,815 - MPMX19_03266 0.44 +0.1 610,066 + MPMX19_03266 0.76 -1.1 610,066 + MPMX19_03266 0.76 -0.2 610,066 + MPMX19_03266 0.76 +0.9 610,067 - MPMX19_03266 0.76 +0.9 610,067 - MPMX19_03266 0.76 +0.8
Or see this region's nucleotide sequence