Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03011

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03010 and MPMX19_03011 are separated by 100 nucleotidesMPMX19_03011 and MPMX19_03012 overlap by 61 nucleotidesMPMX19_03012 and MPMX19_03013 are separated by 107 nucleotides MPMX19_03010: MPMX19_03010 - 3,4-dihydroxy-2-butanone 4-phosphate synthase, at 273,796 to 274,458 _03010 MPMX19_03011: MPMX19_03011 - hypothetical protein, at 274,559 to 275,140 _03011 MPMX19_03012: MPMX19_03012 - hypothetical protein, at 275,080 to 275,538 _03012 MPMX19_03013: MPMX19_03013 - Aldehyde-alcohol dehydrogenase, at 275,646 to 278,312 _03013 Position (kb) 274 275 276Strain fitness (log2 ratio) -2 -1 0 1at 273.637 kb on + strandat 273.637 kb on + strandat 273.637 kb on + strandat 273.638 kb on - strandat 273.638 kb on - strandat 273.638 kb on - strandat 273.808 kb on + strandat 273.808 kb on + strandat 273.808 kb on + strandat 273.808 kb on + strandat 273.808 kb on + strandat 273.808 kb on + strandat 273.809 kb on - strandat 274.269 kb on + strand, within MPMX19_03010at 274.270 kb on - strand, within MPMX19_03010at 274.561 kb on - strandat 274.668 kb on + strand, within MPMX19_03011at 274.669 kb on - strand, within MPMX19_03011at 274.848 kb on + strand, within MPMX19_03011at 274.848 kb on + strand, within MPMX19_03011at 274.848 kb on + strand, within MPMX19_03011at 274.849 kb on - strand, within MPMX19_03011at 274.849 kb on - strand, within MPMX19_03011at 274.849 kb on - strand, within MPMX19_03011at 274.849 kb on - strand, within MPMX19_03011at 274.924 kb on - strand, within MPMX19_03011at 274.924 kb on - strand, within MPMX19_03011at 274.924 kb on - strand, within MPMX19_03011at 274.971 kb on + strand, within MPMX19_03011at 275.505 kb on + strandat 275.506 kb on - strandat 275.506 kb on - strandat 275.506 kb on - strandat 275.506 kb on - strandat 275.717 kb on - strandat 275.717 kb on - strandat 275.717 kb on - strandat 275.717 kb on - strandat 275.717 kb on - strandat 275.717 kb on - strandat 275.729 kb on - strandat 275.732 kb on - strandat 275.732 kb on - strandat 275.732 kb on - strandat 275.732 kb on - strandat 275.732 kb on - strandat 275.732 kb on - strandat 275.732 kb on - strandat 275.774 kb on - strandat 276.013 kb on + strand, within MPMX19_03013

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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273,637 + +0.4
273,637 + -0.1
273,637 + -0.6
273,638 - +0.7
273,638 - -0.4
273,638 - +0.3
273,808 + +0.1
273,808 + -1.3
273,808 + -0.7
273,808 + +0.1
273,808 + +0.6
273,808 + -1.0
273,809 - -0.4
274,269 + MPMX19_03010 0.71 -0.6
274,270 - MPMX19_03010 0.71 -0.2
274,561 - -2.0
274,668 + MPMX19_03011 0.19 +0.1
274,669 - MPMX19_03011 0.19 +0.5
274,848 + MPMX19_03011 0.50 -0.3
274,848 + MPMX19_03011 0.50 +0.4
274,848 + MPMX19_03011 0.50 +1.7
274,849 - MPMX19_03011 0.50 -1.1
274,849 - MPMX19_03011 0.50 -0.1
274,849 - MPMX19_03011 0.50 -0.1
274,849 - MPMX19_03011 0.50 -2.4
274,924 - MPMX19_03011 0.63 +0.9
274,924 - MPMX19_03011 0.63 +0.7
274,924 - MPMX19_03011 0.63 -1.4
274,971 + MPMX19_03011 0.71 +1.4
275,505 + +0.1
275,506 - +0.1
275,506 - -1.1
275,506 - +0.5
275,506 - -0.1
275,717 - -1.9
275,717 - +0.3
275,717 - -1.4
275,717 - -1.4
275,717 - -0.6
275,717 - -0.2
275,729 - -1.7
275,732 - +0.5
275,732 - -0.2
275,732 - -0.1
275,732 - -0.3
275,732 - -0.1
275,732 - -1.3
275,732 - -0.8
275,774 - +1.3
276,013 + MPMX19_03013 0.14 +0.0

Or see this region's nucleotide sequence