Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02969 and MPMX19_02970 are separated by 142 nucleotides MPMX19_02970 and MPMX19_02971 are separated by 248 nucleotides
MPMX19_02969: MPMX19_02969 - HTH-type transcriptional repressor PurR, at 230,599 to 231,687
_02969
MPMX19_02970: MPMX19_02970 - Sialic acid-binding periplasmic protein SiaP, at 231,830 to 232,870
_02970
MPMX19_02971: MPMX19_02971 - Sialic acid TRAP transporter permease protein SiaT, at 233,119 to 235,014
_02971
Position (kb) 231
232
233 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 230.888 kb on + strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.889 kb on - strand, within MPMX19_02969 at 230.939 kb on + strand, within MPMX19_02969 at 230.940 kb on - strand, within MPMX19_02969 at 230.940 kb on - strand, within MPMX19_02969 at 231.050 kb on + strand, within MPMX19_02969 at 231.050 kb on + strand, within MPMX19_02969 at 231.116 kb on + strand, within MPMX19_02969 at 231.117 kb on - strand, within MPMX19_02969 at 231.117 kb on - strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.158 kb on + strand, within MPMX19_02969 at 231.159 kb on - strand, within MPMX19_02969 at 231.159 kb on - strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.485 kb on + strand, within MPMX19_02969 at 231.486 kb on - strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.506 kb on + strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.507 kb on - strand, within MPMX19_02969 at 231.811 kb on - strand at 231.963 kb on - strand, within MPMX19_02970 at 232.030 kb on + strand, within MPMX19_02970 at 232.211 kb on + strand, within MPMX19_02970 at 232.212 kb on - strand, within MPMX19_02970 at 232.286 kb on + strand, within MPMX19_02970 at 232.286 kb on + strand, within MPMX19_02970 at 232.287 kb on - strand, within MPMX19_02970 at 232.287 kb on - strand, within MPMX19_02970 at 232.287 kb on - strand, within MPMX19_02970 at 232.463 kb on + strand, within MPMX19_02970 at 232.463 kb on + strand, within MPMX19_02970 at 232.463 kb on + strand, within MPMX19_02970 at 232.464 kb on - strand, within MPMX19_02970 at 232.464 kb on - strand, within MPMX19_02970 at 232.464 kb on - strand, within MPMX19_02970 at 232.535 kb on + strand, within MPMX19_02970 at 232.797 kb on - strand at 232.969 kb on + strand at 232.969 kb on + strand at 232.969 kb on + strand at 232.969 kb on + strand at 232.969 kb on + strand at 232.970 kb on - strand at 232.970 kb on - strand at 232.970 kb on - strand at 233.078 kb on + strand at 233.078 kb on + strand at 233.078 kb on + strand at 233.078 kb on + strand at 233.078 kb on + strand at 233.079 kb on - strand at 233.079 kb on - strand at 233.297 kb on - strand at 233.400 kb on + strand, within MPMX19_02971 at 233.400 kb on + strand, within MPMX19_02971 at 233.401 kb on - strand, within MPMX19_02971 at 233.401 kb on - strand, within MPMX19_02971 at 233.401 kb on - strand, within MPMX19_02971 at 233.503 kb on + strand, within MPMX19_02971 at 233.504 kb on - strand, within MPMX19_02971 at 233.518 kb on + strand, within MPMX19_02971 at 233.518 kb on + strand, within MPMX19_02971 at 233.518 kb on + strand, within MPMX19_02971 at 233.519 kb on - strand, within MPMX19_02971 at 233.833 kb on + strand, within MPMX19_02971 at 233.833 kb on + strand, within MPMX19_02971 at 233.833 kb on + strand, within MPMX19_02971 at 233.833 kb on + strand, within MPMX19_02971 at 233.834 kb on - strand, within MPMX19_02971 at 233.834 kb on - strand, within MPMX19_02971
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 230,888 + MPMX19_02969 0.27 -1.6 230,889 - MPMX19_02969 0.27 -2.0 230,889 - MPMX19_02969 0.27 -0.9 230,889 - MPMX19_02969 0.27 +0.4 230,889 - MPMX19_02969 0.27 +0.1 230,889 - MPMX19_02969 0.27 -2.9 230,939 + MPMX19_02969 0.31 -0.4 230,940 - MPMX19_02969 0.31 -0.6 230,940 - MPMX19_02969 0.31 +0.3 231,050 + MPMX19_02969 0.41 -0.6 231,050 + MPMX19_02969 0.41 -0.0 231,116 + MPMX19_02969 0.47 +0.4 231,117 - MPMX19_02969 0.48 -1.1 231,117 - MPMX19_02969 0.48 -2.3 231,158 + MPMX19_02969 0.51 -2.2 231,158 + MPMX19_02969 0.51 -0.1 231,158 + MPMX19_02969 0.51 -0.3 231,158 + MPMX19_02969 0.51 -1.4 231,158 + MPMX19_02969 0.51 -0.3 231,159 - MPMX19_02969 0.51 -1.4 231,159 - MPMX19_02969 0.51 -0.0 231,485 + MPMX19_02969 0.81 +0.6 231,485 + MPMX19_02969 0.81 -0.0 231,485 + MPMX19_02969 0.81 +0.1 231,485 + MPMX19_02969 0.81 +0.3 231,485 + MPMX19_02969 0.81 +1.0 231,485 + MPMX19_02969 0.81 +0.5 231,486 - MPMX19_02969 0.81 -0.3 231,506 + MPMX19_02969 0.83 -0.0 231,506 + MPMX19_02969 0.83 -1.1 231,506 + MPMX19_02969 0.83 +0.8 231,506 + MPMX19_02969 0.83 -1.0 231,506 + MPMX19_02969 0.83 -0.2 231,506 + MPMX19_02969 0.83 +0.6 231,506 + MPMX19_02969 0.83 +0.1 231,507 - MPMX19_02969 0.83 -0.5 231,507 - MPMX19_02969 0.83 +1.0 231,507 - MPMX19_02969 0.83 -1.6 231,507 - MPMX19_02969 0.83 -0.7 231,507 - MPMX19_02969 0.83 -0.3 231,507 - MPMX19_02969 0.83 -0.4 231,811 - +0.7 231,963 - MPMX19_02970 0.13 +0.6 232,030 + MPMX19_02970 0.19 +0.5 232,211 + MPMX19_02970 0.37 -0.5 232,212 - MPMX19_02970 0.37 +0.0 232,286 + MPMX19_02970 0.44 +1.1 232,286 + MPMX19_02970 0.44 +0.1 232,287 - MPMX19_02970 0.44 -0.3 232,287 - MPMX19_02970 0.44 -0.4 232,287 - MPMX19_02970 0.44 -1.1 232,463 + MPMX19_02970 0.61 +0.8 232,463 + MPMX19_02970 0.61 +0.7 232,463 + MPMX19_02970 0.61 +0.9 232,464 - MPMX19_02970 0.61 -1.1 232,464 - MPMX19_02970 0.61 +0.1 232,464 - MPMX19_02970 0.61 +1.1 232,535 + MPMX19_02970 0.68 -0.4 232,797 - -2.2 232,969 + -0.9 232,969 + +0.3 232,969 + -0.1 232,969 + +0.5 232,969 + -1.3 232,970 - +0.8 232,970 - -1.0 232,970 - -0.3 233,078 + -0.3 233,078 + -0.3 233,078 + -0.6 233,078 + -0.6 233,078 + -0.2 233,079 - -0.7 233,079 - -1.7 233,297 - -0.3 233,400 + MPMX19_02971 0.15 +0.4 233,400 + MPMX19_02971 0.15 -0.5 233,401 - MPMX19_02971 0.15 -0.6 233,401 - MPMX19_02971 0.15 -1.5 233,401 - MPMX19_02971 0.15 -1.5 233,503 + MPMX19_02971 0.20 -0.5 233,504 - MPMX19_02971 0.20 -0.9 233,518 + MPMX19_02971 0.21 +1.4 233,518 + MPMX19_02971 0.21 +0.7 233,518 + MPMX19_02971 0.21 -1.1 233,519 - MPMX19_02971 0.21 -0.1 233,833 + MPMX19_02971 0.38 +0.1 233,833 + MPMX19_02971 0.38 -0.9 233,833 + MPMX19_02971 0.38 -0.4 233,833 + MPMX19_02971 0.38 -1.1 233,834 - MPMX19_02971 0.38 -0.1 233,834 - MPMX19_02971 0.38 -0.2
Or see this region's nucleotide sequence