Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02783 and MPMX19_02784 are separated by 12 nucleotides MPMX19_02784 and MPMX19_02785 overlap by 4 nucleotides MPMX19_02785 and MPMX19_02786 are separated by 28 nucleotides
MPMX19_02783: MPMX19_02783 - HTH-type transcriptional regulator DmlR, at 16,453 to 17,391
_02783
MPMX19_02784: MPMX19_02784 - phosphoglycerate mutase GpmB, at 17,404 to 18,117
_02784
MPMX19_02785: MPMX19_02785 - hypothetical protein, at 18,114 to 18,497
_02785
MPMX19_02786: MPMX19_02786 - hypothetical protein, at 18,526 to 19,581
_02786
Position (kb) 17
18
19 Strain fitness (log2 ratio) -2
-1
0
1
2 at 16.418 kb on - strand at 16.678 kb on + strand, within MPMX19_02783 at 16.678 kb on + strand, within MPMX19_02783 at 16.678 kb on + strand, within MPMX19_02783 at 16.678 kb on + strand, within MPMX19_02783 at 16.678 kb on + strand, within MPMX19_02783 at 16.678 kb on + strand, within MPMX19_02783 at 16.679 kb on - strand, within MPMX19_02783 at 16.679 kb on - strand, within MPMX19_02783 at 16.972 kb on + strand, within MPMX19_02783 at 16.972 kb on + strand, within MPMX19_02783 at 16.972 kb on + strand, within MPMX19_02783 at 16.972 kb on + strand, within MPMX19_02783 at 16.972 kb on + strand, within MPMX19_02783 at 16.973 kb on - strand, within MPMX19_02783 at 16.973 kb on - strand, within MPMX19_02783 at 16.973 kb on - strand, within MPMX19_02783 at 16.973 kb on - strand, within MPMX19_02783 at 16.973 kb on - strand, within MPMX19_02783 at 17.035 kb on + strand, within MPMX19_02783 at 17.035 kb on + strand, within MPMX19_02783 at 17.035 kb on + strand, within MPMX19_02783 at 17.035 kb on + strand, within MPMX19_02783 at 17.035 kb on + strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.041 kb on + strand, within MPMX19_02783 at 17.042 kb on - strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.274 kb on - strand, within MPMX19_02783 at 17.274 kb on - strand, within MPMX19_02783 at 17.312 kb on + strand at 17.312 kb on + strand at 17.385 kb on + strand at 17.389 kb on + strand at 17.389 kb on + strand at 17.390 kb on - strand at 17.390 kb on - strand at 17.390 kb on - strand at 17.390 kb on - strand at 17.561 kb on + strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.068 kb on + strand at 18.069 kb on - strand at 18.069 kb on - strand at 18.696 kb on - strand, within MPMX19_02786 at 18.749 kb on + strand, within MPMX19_02786 at 18.749 kb on + strand, within MPMX19_02786 at 18.750 kb on - strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.921 kb on - strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.987 kb on - strand, within MPMX19_02786 at 19.014 kb on - strand, within MPMX19_02786
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 16,418 - +1.3 16,678 + MPMX19_02783 0.24 -0.3 16,678 + MPMX19_02783 0.24 -1.2 16,678 + MPMX19_02783 0.24 -0.3 16,678 + MPMX19_02783 0.24 -0.1 16,678 + MPMX19_02783 0.24 +0.2 16,678 + MPMX19_02783 0.24 -1.2 16,679 - MPMX19_02783 0.24 -0.7 16,679 - MPMX19_02783 0.24 +1.7 16,972 + MPMX19_02783 0.55 -0.5 16,972 + MPMX19_02783 0.55 +1.5 16,972 + MPMX19_02783 0.55 -0.0 16,972 + MPMX19_02783 0.55 -0.8 16,972 + MPMX19_02783 0.55 +0.6 16,973 - MPMX19_02783 0.55 +1.4 16,973 - MPMX19_02783 0.55 -0.3 16,973 - MPMX19_02783 0.55 -0.4 16,973 - MPMX19_02783 0.55 +0.2 16,973 - MPMX19_02783 0.55 -0.4 17,035 + MPMX19_02783 0.62 -0.1 17,035 + MPMX19_02783 0.62 +0.7 17,035 + MPMX19_02783 0.62 +0.2 17,035 + MPMX19_02783 0.62 +0.3 17,035 + MPMX19_02783 0.62 -2.0 17,036 - MPMX19_02783 0.62 -1.5 17,036 - MPMX19_02783 0.62 +0.6 17,036 - MPMX19_02783 0.62 +2.0 17,036 - MPMX19_02783 0.62 -2.3 17,036 - MPMX19_02783 0.62 +1.2 17,036 - MPMX19_02783 0.62 -0.4 17,041 + MPMX19_02783 0.63 -1.1 17,042 - MPMX19_02783 0.63 -0.4 17,266 + MPMX19_02783 0.87 +0.0 17,266 + MPMX19_02783 0.87 -0.8 17,266 + MPMX19_02783 0.87 -1.2 17,266 + MPMX19_02783 0.87 +0.9 17,266 + MPMX19_02783 0.87 -1.0 17,267 - MPMX19_02783 0.87 -0.9 17,267 - MPMX19_02783 0.87 +0.1 17,267 - MPMX19_02783 0.87 -0.5 17,267 - MPMX19_02783 0.87 -0.8 17,267 - MPMX19_02783 0.87 +0.0 17,267 - MPMX19_02783 0.87 -1.6 17,267 - MPMX19_02783 0.87 +0.5 17,274 - MPMX19_02783 0.87 -1.0 17,274 - MPMX19_02783 0.87 +0.2 17,312 + +1.1 17,312 + +0.7 17,385 + -0.3 17,389 + -0.8 17,389 + +0.7 17,390 - +0.4 17,390 - -1.4 17,390 - -1.1 17,390 - -0.0 17,561 + MPMX19_02784 0.22 -0.4 17,775 - MPMX19_02784 0.52 +1.1 17,775 - MPMX19_02784 0.52 -0.6 17,775 - MPMX19_02784 0.52 -0.8 17,775 - MPMX19_02784 0.52 +0.7 17,775 - MPMX19_02784 0.52 +1.3 17,775 - MPMX19_02784 0.52 -1.2 17,780 + MPMX19_02784 0.53 -2.3 17,780 + MPMX19_02784 0.53 +0.2 17,780 + MPMX19_02784 0.53 +1.2 17,780 + MPMX19_02784 0.53 -0.8 17,780 + MPMX19_02784 0.53 +0.2 17,780 + MPMX19_02784 0.53 +0.2 17,780 + MPMX19_02784 0.53 -1.3 17,780 + MPMX19_02784 0.53 -0.7 17,780 + MPMX19_02784 0.53 -0.5 17,780 + MPMX19_02784 0.53 -0.3 17,780 + MPMX19_02784 0.53 +1.1 17,780 + MPMX19_02784 0.53 -0.7 17,780 + MPMX19_02784 0.53 +0.2 17,781 - MPMX19_02784 0.53 -0.5 17,781 - MPMX19_02784 0.53 -0.6 17,781 - MPMX19_02784 0.53 -0.1 17,781 - MPMX19_02784 0.53 +1.7 17,781 - MPMX19_02784 0.53 +1.5 17,781 - MPMX19_02784 0.53 -1.3 17,781 - MPMX19_02784 0.53 -0.7 17,781 - MPMX19_02784 0.53 +2.3 17,781 - MPMX19_02784 0.53 +1.6 18,038 + MPMX19_02784 0.89 +0.2 18,038 + MPMX19_02784 0.89 -0.3 18,038 + MPMX19_02784 0.89 -0.1 18,038 + MPMX19_02784 0.89 +1.4 18,038 + MPMX19_02784 0.89 +0.9 18,038 + MPMX19_02784 0.89 -0.6 18,038 + MPMX19_02784 0.89 +0.0 18,039 - MPMX19_02784 0.89 +0.5 18,039 - MPMX19_02784 0.89 +0.2 18,039 - MPMX19_02784 0.89 -2.3 18,039 - MPMX19_02784 0.89 +1.5 18,039 - MPMX19_02784 0.89 +0.5 18,039 - MPMX19_02784 0.89 +0.2 18,039 - MPMX19_02784 0.89 +0.3 18,068 + +1.4 18,069 - +0.3 18,069 - -0.0 18,696 - MPMX19_02786 0.16 -0.7 18,749 + MPMX19_02786 0.21 -0.1 18,749 + MPMX19_02786 0.21 +1.2 18,750 - MPMX19_02786 0.21 -1.4 18,903 + MPMX19_02786 0.36 -0.3 18,903 + MPMX19_02786 0.36 -1.5 18,903 + MPMX19_02786 0.36 +0.2 18,903 + MPMX19_02786 0.36 +1.3 18,903 + MPMX19_02786 0.36 -1.1 18,903 + MPMX19_02786 0.36 +0.3 18,903 + MPMX19_02786 0.36 -1.6 18,903 + MPMX19_02786 0.36 -0.3 18,903 + MPMX19_02786 0.36 +0.3 18,904 - MPMX19_02786 0.36 -0.7 18,904 - MPMX19_02786 0.36 +0.0 18,904 - MPMX19_02786 0.36 +1.2 18,904 - MPMX19_02786 0.36 -0.6 18,904 - MPMX19_02786 0.36 -1.8 18,904 - MPMX19_02786 0.36 +1.7 18,904 - MPMX19_02786 0.36 +0.2 18,905 + MPMX19_02786 0.36 +0.5 18,905 + MPMX19_02786 0.36 -0.5 18,905 + MPMX19_02786 0.36 -1.0 18,905 + MPMX19_02786 0.36 +0.7 18,905 + MPMX19_02786 0.36 +0.7 18,905 + MPMX19_02786 0.36 -1.1 18,905 + MPMX19_02786 0.36 +0.4 18,905 + MPMX19_02786 0.36 -0.3 18,905 + MPMX19_02786 0.36 -1.1 18,905 + MPMX19_02786 0.36 +0.1 18,905 + MPMX19_02786 0.36 +0.2 18,905 + MPMX19_02786 0.36 +0.4 18,905 + MPMX19_02786 0.36 -0.9 18,905 + MPMX19_02786 0.36 -0.1 18,905 + MPMX19_02786 0.36 +0.0 18,905 + MPMX19_02786 0.36 -0.6 18,905 + MPMX19_02786 0.36 -1.3 18,905 + MPMX19_02786 0.36 +1.2 18,905 + MPMX19_02786 0.36 -0.1 18,905 + MPMX19_02786 0.36 -0.1 18,905 + MPMX19_02786 0.36 -1.0 18,905 + MPMX19_02786 0.36 +0.4 18,906 - MPMX19_02786 0.36 -2.3 18,906 - MPMX19_02786 0.36 -0.3 18,906 - MPMX19_02786 0.36 +0.2 18,906 - MPMX19_02786 0.36 +0.4 18,906 - MPMX19_02786 0.36 -0.4 18,906 - MPMX19_02786 0.36 -1.4 18,906 - MPMX19_02786 0.36 -0.6 18,906 - MPMX19_02786 0.36 -2.1 18,906 - MPMX19_02786 0.36 -0.3 18,906 - MPMX19_02786 0.36 +1.1 18,906 - MPMX19_02786 0.36 +0.5 18,906 - MPMX19_02786 0.36 +0.7 18,906 - MPMX19_02786 0.36 -0.3 18,906 - MPMX19_02786 0.36 -0.3 18,906 - MPMX19_02786 0.36 -0.6 18,906 - MPMX19_02786 0.36 -0.5 18,906 - MPMX19_02786 0.36 -1.4 18,906 - MPMX19_02786 0.36 -0.7 18,906 - MPMX19_02786 0.36 +0.2 18,906 - MPMX19_02786 0.36 -0.2 18,906 - MPMX19_02786 0.36 -1.0 18,906 - MPMX19_02786 0.36 -0.6 18,906 - MPMX19_02786 0.36 -2.5 18,906 - MPMX19_02786 0.36 -0.8 18,906 - MPMX19_02786 0.36 -0.4 18,906 - MPMX19_02786 0.36 -0.4 18,906 - MPMX19_02786 0.36 -0.1 18,906 - MPMX19_02786 0.36 +0.9 18,921 - MPMX19_02786 0.37 -0.1 18,986 + MPMX19_02786 0.44 +0.7 18,986 + MPMX19_02786 0.44 -0.9 18,986 + MPMX19_02786 0.44 -0.1 18,986 + MPMX19_02786 0.44 -2.0 18,987 - MPMX19_02786 0.44 -0.7 19,014 - MPMX19_02786 0.46 -0.3
Or see this region's nucleotide sequence