Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02317 and MPMX19_02318 are separated by 42 nucleotides MPMX19_02318 and MPMX19_02319 are separated by 134 nucleotides
MPMX19_02317: MPMX19_02317 - hypothetical protein, at 2,437,939 to 2,438,658
_02317
MPMX19_02318: MPMX19_02318 - Inosine-5'-monophosphate dehydrogenase, at 2,438,701 to 2,439,111
_02318
MPMX19_02319: MPMX19_02319 - hypothetical protein, at 2,439,246 to 2,440,463
_02319
Position (kb)
2438
2439
2440 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2437.736 kb on + strand at 2437.736 kb on + strand at 2437.736 kb on + strand at 2437.736 kb on + strand at 2437.736 kb on + strand at 2437.736 kb on + strand at 2437.737 kb on - strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.936 kb on + strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2437.937 kb on - strand at 2438.575 kb on + strand, within MPMX19_02317 at 2438.575 kb on + strand, within MPMX19_02317 at 2438.575 kb on + strand, within MPMX19_02317 at 2438.575 kb on + strand, within MPMX19_02317 at 2438.575 kb on + strand, within MPMX19_02317 at 2438.575 kb on + strand, within MPMX19_02317 at 2438.575 kb on + strand, within MPMX19_02317 at 2438.575 kb on + strand, within MPMX19_02317 at 2438.575 kb on + strand, within MPMX19_02317 at 2438.575 kb on + strand, within MPMX19_02317 at 2438.576 kb on - strand, within MPMX19_02317 at 2438.576 kb on - strand, within MPMX19_02317 at 2438.576 kb on - strand, within MPMX19_02317 at 2438.576 kb on - strand, within MPMX19_02317 at 2438.581 kb on + strand, within MPMX19_02317 at 2438.581 kb on + strand, within MPMX19_02317 at 2438.581 kb on + strand, within MPMX19_02317 at 2438.581 kb on + strand, within MPMX19_02317 at 2438.581 kb on + strand, within MPMX19_02317 at 2438.581 kb on + strand, within MPMX19_02317 at 2438.581 kb on + strand, within MPMX19_02317 at 2438.581 kb on + strand, within MPMX19_02317 at 2438.581 kb on + strand, within MPMX19_02317 at 2438.581 kb on + strand, within MPMX19_02317 at 2438.582 kb on + strand, within MPMX19_02317 at 2438.582 kb on - strand, within MPMX19_02317 at 2438.582 kb on - strand, within MPMX19_02317 at 2438.582 kb on - strand, within MPMX19_02317 at 2438.582 kb on - strand, within MPMX19_02317 at 2438.582 kb on - strand, within MPMX19_02317 at 2438.582 kb on - strand, within MPMX19_02317 at 2438.582 kb on - strand, within MPMX19_02317 at 2438.582 kb on - strand, within MPMX19_02317 at 2438.582 kb on - strand, within MPMX19_02317 at 2438.582 kb on - strand, within MPMX19_02317 at 2438.735 kb on + strand at 2438.735 kb on + strand at 2438.735 kb on + strand at 2438.735 kb on + strand at 2438.735 kb on + strand at 2438.735 kb on + strand at 2438.735 kb on + strand at 2438.736 kb on - strand at 2438.736 kb on - strand at 2438.736 kb on - strand at 2438.736 kb on - strand at 2438.736 kb on - strand at 2438.736 kb on - strand at 2438.736 kb on - strand at 2438.736 kb on - strand at 2438.810 kb on + strand, within MPMX19_02318 at 2439.048 kb on + strand, within MPMX19_02318 at 2439.048 kb on + strand, within MPMX19_02318 at 2439.048 kb on + strand, within MPMX19_02318 at 2439.048 kb on + strand, within MPMX19_02318 at 2439.048 kb on + strand, within MPMX19_02318 at 2439.048 kb on + strand, within MPMX19_02318 at 2439.048 kb on + strand, within MPMX19_02318 at 2439.048 kb on + strand, within MPMX19_02318 at 2439.048 kb on + strand, within MPMX19_02318 at 2439.048 kb on + strand, within MPMX19_02318 at 2439.049 kb on - strand, within MPMX19_02318 at 2439.049 kb on - strand, within MPMX19_02318 at 2439.049 kb on - strand, within MPMX19_02318 at 2439.049 kb on - strand, within MPMX19_02318 at 2439.049 kb on - strand, within MPMX19_02318 at 2439.049 kb on - strand, within MPMX19_02318 at 2439.049 kb on - strand, within MPMX19_02318 at 2439.226 kb on + strand at 2439.226 kb on + strand at 2439.226 kb on + strand at 2439.226 kb on + strand at 2439.227 kb on - strand at 2439.227 kb on - strand at 2439.230 kb on + strand at 2439.230 kb on + strand at 2439.230 kb on + strand at 2439.230 kb on + strand at 2439.230 kb on + strand at 2439.230 kb on + strand at 2439.230 kb on + strand at 2439.230 kb on + strand at 2439.231 kb on - strand at 2439.231 kb on - strand at 2439.231 kb on - strand at 2439.231 kb on - strand at 2439.231 kb on - strand at 2439.231 kb on - strand at 2439.436 kb on + strand, within MPMX19_02319 at 2439.436 kb on + strand, within MPMX19_02319 at 2439.436 kb on + strand, within MPMX19_02319 at 2439.436 kb on + strand, within MPMX19_02319 at 2439.437 kb on - strand, within MPMX19_02319 at 2439.437 kb on - strand, within MPMX19_02319 at 2439.437 kb on - strand, within MPMX19_02319 at 2439.437 kb on - strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.781 kb on + strand, within MPMX19_02319 at 2439.782 kb on - strand, within MPMX19_02319 at 2439.782 kb on - strand, within MPMX19_02319 at 2439.782 kb on - strand, within MPMX19_02319 at 2439.782 kb on - strand, within MPMX19_02319 at 2439.782 kb on - strand, within MPMX19_02319 at 2439.802 kb on + strand, within MPMX19_02319 at 2439.802 kb on + strand, within MPMX19_02319 at 2439.802 kb on + strand, within MPMX19_02319 at 2439.803 kb on - strand, within MPMX19_02319 at 2439.803 kb on - strand, within MPMX19_02319 at 2439.803 kb on - strand, within MPMX19_02319 at 2439.803 kb on - strand, within MPMX19_02319 at 2439.887 kb on + strand, within MPMX19_02319 at 2439.887 kb on + strand, within MPMX19_02319 at 2439.888 kb on - strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on + strand, within MPMX19_02319 at 2440.048 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319 at 2440.049 kb on - strand, within MPMX19_02319
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 2,437,736 + -1.5 2,437,736 + +0.8 2,437,736 + -0.3 2,437,736 + +0.1 2,437,736 + +0.8 2,437,736 + -0.8 2,437,737 - -1.0 2,437,936 + -2.7 2,437,936 + +0.8 2,437,936 + -1.5 2,437,936 + +1.1 2,437,936 + -1.3 2,437,936 + -0.4 2,437,936 + -2.2 2,437,936 + +1.0 2,437,936 + -0.1 2,437,936 + +1.1 2,437,936 + +0.5 2,437,936 + -0.5 2,437,936 + -0.1 2,437,936 + -1.6 2,437,936 + -0.4 2,437,936 + -1.5 2,437,936 + +1.0 2,437,936 + +2.8 2,437,936 + -1.4 2,437,936 + -1.4 2,437,937 - -0.1 2,437,937 - -0.1 2,437,937 - -0.2 2,437,937 - -1.0 2,437,937 - +0.8 2,437,937 - -0.8 2,437,937 - -0.8 2,437,937 - -0.3 2,437,937 - -0.4 2,437,937 - -1.6 2,437,937 - -0.4 2,437,937 - -0.8 2,437,937 - -0.8 2,437,937 - +0.0 2,437,937 - +0.1 2,437,937 - +0.1 2,437,937 - -0.5 2,437,937 - +0.8 2,437,937 - -0.1 2,437,937 - +0.1 2,437,937 - -1.4 2,437,937 - +0.7 2,437,937 - -0.4 2,437,937 - -2.4 2,437,937 - -0.4 2,437,937 - +0.2 2,438,575 + MPMX19_02317 0.88 -0.6 2,438,575 + MPMX19_02317 0.88 +0.8 2,438,575 + MPMX19_02317 0.88 +0.6 2,438,575 + MPMX19_02317 0.88 -0.6 2,438,575 + MPMX19_02317 0.88 -1.0 2,438,575 + MPMX19_02317 0.88 -0.8 2,438,575 + MPMX19_02317 0.88 -2.3 2,438,575 + MPMX19_02317 0.88 +0.3 2,438,575 + MPMX19_02317 0.88 +0.2 2,438,575 + MPMX19_02317 0.88 +0.9 2,438,576 - MPMX19_02317 0.88 -0.9 2,438,576 - MPMX19_02317 0.88 -2.5 2,438,576 - MPMX19_02317 0.88 +1.4 2,438,576 - MPMX19_02317 0.88 -0.0 2,438,581 + MPMX19_02317 0.89 +1.0 2,438,581 + MPMX19_02317 0.89 -0.7 2,438,581 + MPMX19_02317 0.89 +0.4 2,438,581 + MPMX19_02317 0.89 -0.1 2,438,581 + MPMX19_02317 0.89 -0.4 2,438,581 + MPMX19_02317 0.89 +0.2 2,438,581 + MPMX19_02317 0.89 -1.2 2,438,581 + MPMX19_02317 0.89 -1.6 2,438,581 + MPMX19_02317 0.89 -0.4 2,438,581 + MPMX19_02317 0.89 -2.0 2,438,582 + MPMX19_02317 0.89 +1.2 2,438,582 - MPMX19_02317 0.89 -0.1 2,438,582 - MPMX19_02317 0.89 -0.9 2,438,582 - MPMX19_02317 0.89 +1.2 2,438,582 - MPMX19_02317 0.89 -0.6 2,438,582 - MPMX19_02317 0.89 +0.8 2,438,582 - MPMX19_02317 0.89 +0.2 2,438,582 - MPMX19_02317 0.89 +0.8 2,438,582 - MPMX19_02317 0.89 -0.8 2,438,582 - MPMX19_02317 0.89 -1.3 2,438,582 - MPMX19_02317 0.89 +0.1 2,438,735 + -0.8 2,438,735 + -1.7 2,438,735 + +1.8 2,438,735 + +0.1 2,438,735 + +0.2 2,438,735 + -1.2 2,438,735 + -0.6 2,438,736 - -0.9 2,438,736 - -1.8 2,438,736 - -0.4 2,438,736 - -0.9 2,438,736 - +0.4 2,438,736 - -0.0 2,438,736 - +0.6 2,438,736 - -1.2 2,438,810 + MPMX19_02318 0.27 -1.2 2,439,048 + MPMX19_02318 0.84 +1.3 2,439,048 + MPMX19_02318 0.84 -0.2 2,439,048 + MPMX19_02318 0.84 +0.3 2,439,048 + MPMX19_02318 0.84 +1.4 2,439,048 + MPMX19_02318 0.84 -0.4 2,439,048 + MPMX19_02318 0.84 +0.3 2,439,048 + MPMX19_02318 0.84 -1.0 2,439,048 + MPMX19_02318 0.84 +1.2 2,439,048 + MPMX19_02318 0.84 -0.1 2,439,048 + MPMX19_02318 0.84 -0.9 2,439,049 - MPMX19_02318 0.85 -1.3 2,439,049 - MPMX19_02318 0.85 +0.4 2,439,049 - MPMX19_02318 0.85 -0.8 2,439,049 - MPMX19_02318 0.85 -1.0 2,439,049 - MPMX19_02318 0.85 +1.2 2,439,049 - MPMX19_02318 0.85 +1.0 2,439,049 - MPMX19_02318 0.85 -1.7 2,439,226 + -1.1 2,439,226 + -2.2 2,439,226 + +0.7 2,439,226 + -1.2 2,439,227 - +0.4 2,439,227 - +0.3 2,439,230 + +1.4 2,439,230 + -1.6 2,439,230 + +1.4 2,439,230 + +0.3 2,439,230 + +1.0 2,439,230 + +0.7 2,439,230 + +1.2 2,439,230 + -1.0 2,439,231 - -0.8 2,439,231 - +0.7 2,439,231 - -0.4 2,439,231 - -0.6 2,439,231 - -0.4 2,439,231 - -0.5 2,439,436 + MPMX19_02319 0.16 -0.3 2,439,436 + MPMX19_02319 0.16 +0.8 2,439,436 + MPMX19_02319 0.16 -1.6 2,439,436 + MPMX19_02319 0.16 -1.6 2,439,437 - MPMX19_02319 0.16 -0.8 2,439,437 - MPMX19_02319 0.16 +0.1 2,439,437 - MPMX19_02319 0.16 -1.0 2,439,437 - MPMX19_02319 0.16 +0.6 2,439,781 + MPMX19_02319 0.44 +0.1 2,439,781 + MPMX19_02319 0.44 +0.9 2,439,781 + MPMX19_02319 0.44 -1.2 2,439,781 + MPMX19_02319 0.44 +0.1 2,439,781 + MPMX19_02319 0.44 +0.0 2,439,781 + MPMX19_02319 0.44 +1.4 2,439,781 + MPMX19_02319 0.44 -1.2 2,439,781 + MPMX19_02319 0.44 -0.8 2,439,781 + MPMX19_02319 0.44 +0.7 2,439,782 - MPMX19_02319 0.44 -1.0 2,439,782 - MPMX19_02319 0.44 +0.2 2,439,782 - MPMX19_02319 0.44 -0.9 2,439,782 - MPMX19_02319 0.44 -1.2 2,439,782 - MPMX19_02319 0.44 +0.4 2,439,802 + MPMX19_02319 0.46 +0.2 2,439,802 + MPMX19_02319 0.46 -0.4 2,439,802 + MPMX19_02319 0.46 +1.2 2,439,803 - MPMX19_02319 0.46 +1.5 2,439,803 - MPMX19_02319 0.46 -1.8 2,439,803 - MPMX19_02319 0.46 -2.2 2,439,803 - MPMX19_02319 0.46 -1.8 2,439,887 + MPMX19_02319 0.53 -1.3 2,439,887 + MPMX19_02319 0.53 -0.5 2,439,888 - MPMX19_02319 0.53 -0.6 2,440,048 + MPMX19_02319 0.66 -2.5 2,440,048 + MPMX19_02319 0.66 -0.8 2,440,048 + MPMX19_02319 0.66 -0.2 2,440,048 + MPMX19_02319 0.66 +0.8 2,440,048 + MPMX19_02319 0.66 -0.5 2,440,048 + MPMX19_02319 0.66 +1.2 2,440,048 + MPMX19_02319 0.66 -1.0 2,440,048 + MPMX19_02319 0.66 -0.3 2,440,048 + MPMX19_02319 0.66 -1.8 2,440,048 + MPMX19_02319 0.66 -0.3 2,440,048 + MPMX19_02319 0.66 +0.6 2,440,048 + MPMX19_02319 0.66 -0.3 2,440,048 + MPMX19_02319 0.66 -1.8 2,440,048 + MPMX19_02319 0.66 +1.1 2,440,048 - MPMX19_02319 0.66 -0.8 2,440,049 - MPMX19_02319 0.66 -0.5 2,440,049 - MPMX19_02319 0.66 +0.6 2,440,049 - MPMX19_02319 0.66 -0.5 2,440,049 - MPMX19_02319 0.66 -0.2 2,440,049 - MPMX19_02319 0.66 +1.1 2,440,049 - MPMX19_02319 0.66 +0.2 2,440,049 - MPMX19_02319 0.66 -1.2 2,440,049 - MPMX19_02319 0.66 -0.3
Or see this region's nucleotide sequence