Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01212 and MPMX19_01213 are separated by 90 nucleotides MPMX19_01213 and MPMX19_01214 are separated by 51 nucleotides MPMX19_01214 and MPMX19_01215 overlap by 29 nucleotides
MPMX19_01212: MPMX19_01212 - Delta-aminolevulinic acid dehydratase, at 1,263,113 to 1,264,117
_01212
MPMX19_01213: MPMX19_01213 - hypothetical protein, at 1,264,208 to 1,264,765
_01213
MPMX19_01214: MPMX19_01214 - hypothetical protein, at 1,264,817 to 1,265,677
_01214
MPMX19_01215: MPMX19_01215 - hypothetical protein, at 1,265,649 to 1,266,299
_01215
Position (kb)
1264
1265 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1264.173 kb on + strand at 1264.173 kb on + strand at 1264.174 kb on - strand at 1264.174 kb on - strand at 1264.174 kb on - strand at 1264.354 kb on + strand, within MPMX19_01213 at 1264.354 kb on + strand, within MPMX19_01213 at 1264.354 kb on + strand, within MPMX19_01213 at 1264.354 kb on + strand, within MPMX19_01213 at 1264.355 kb on - strand, within MPMX19_01213 at 1264.355 kb on - strand, within MPMX19_01213 at 1264.423 kb on - strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.430 kb on + strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.431 kb on - strand, within MPMX19_01213 at 1264.631 kb on + strand, within MPMX19_01213 at 1264.631 kb on + strand, within MPMX19_01213 at 1264.631 kb on + strand, within MPMX19_01213 at 1264.631 kb on + strand, within MPMX19_01213 at 1264.631 kb on + strand, within MPMX19_01213 at 1264.631 kb on + strand, within MPMX19_01213 at 1264.631 kb on + strand, within MPMX19_01213 at 1264.631 kb on + strand, within MPMX19_01213 at 1264.631 kb on + strand, within MPMX19_01213 at 1264.631 kb on + strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.632 kb on - strand, within MPMX19_01213 at 1264.754 kb on + strand at 1264.754 kb on + strand at 1264.755 kb on - strand at 1264.755 kb on - strand at 1264.755 kb on - strand at 1264.786 kb on + strand at 1264.786 kb on + strand at 1264.786 kb on + strand at 1264.786 kb on + strand at 1264.787 kb on - strand at 1264.787 kb on - strand at 1265.601 kb on - strand at 1265.601 kb on - strand at 1265.601 kb on - strand at 1265.670 kb on + strand at 1265.670 kb on + strand at 1265.671 kb on - strand at 1265.671 kb on - strand at 1265.692 kb on + strand at 1265.692 kb on + strand at 1265.692 kb on + strand at 1265.692 kb on + strand at 1265.693 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 1,264,173 + -1.1 1,264,173 + +0.8 1,264,174 - -2.4 1,264,174 - -0.8 1,264,174 - -0.6 1,264,354 + MPMX19_01213 0.26 -0.5 1,264,354 + MPMX19_01213 0.26 -1.1 1,264,354 + MPMX19_01213 0.26 +0.6 1,264,354 + MPMX19_01213 0.26 -0.6 1,264,355 - MPMX19_01213 0.26 +0.3 1,264,355 - MPMX19_01213 0.26 +0.1 1,264,423 - MPMX19_01213 0.39 +0.1 1,264,430 + MPMX19_01213 0.40 +1.2 1,264,430 + MPMX19_01213 0.40 -0.3 1,264,430 + MPMX19_01213 0.40 -1.0 1,264,430 + MPMX19_01213 0.40 -0.1 1,264,430 + MPMX19_01213 0.40 -1.4 1,264,430 + MPMX19_01213 0.40 +0.4 1,264,430 + MPMX19_01213 0.40 +0.7 1,264,430 + MPMX19_01213 0.40 -1.2 1,264,430 + MPMX19_01213 0.40 +1.5 1,264,430 + MPMX19_01213 0.40 -0.2 1,264,430 + MPMX19_01213 0.40 -0.0 1,264,430 + MPMX19_01213 0.40 +1.4 1,264,430 + MPMX19_01213 0.40 -0.6 1,264,430 + MPMX19_01213 0.40 +0.9 1,264,430 + MPMX19_01213 0.40 +0.4 1,264,430 + MPMX19_01213 0.40 +0.8 1,264,430 + MPMX19_01213 0.40 -0.2 1,264,430 + MPMX19_01213 0.40 +0.4 1,264,430 + MPMX19_01213 0.40 -1.4 1,264,431 - MPMX19_01213 0.40 -0.4 1,264,431 - MPMX19_01213 0.40 -0.2 1,264,431 - MPMX19_01213 0.40 -1.4 1,264,431 - MPMX19_01213 0.40 -0.8 1,264,431 - MPMX19_01213 0.40 -0.1 1,264,431 - MPMX19_01213 0.40 -1.1 1,264,431 - MPMX19_01213 0.40 -0.1 1,264,431 - MPMX19_01213 0.40 +0.3 1,264,431 - MPMX19_01213 0.40 -0.1 1,264,431 - MPMX19_01213 0.40 +0.3 1,264,431 - MPMX19_01213 0.40 -1.4 1,264,431 - MPMX19_01213 0.40 -1.5 1,264,431 - MPMX19_01213 0.40 +0.8 1,264,431 - MPMX19_01213 0.40 -0.6 1,264,631 + MPMX19_01213 0.76 +1.0 1,264,631 + MPMX19_01213 0.76 +0.1 1,264,631 + MPMX19_01213 0.76 +0.7 1,264,631 + MPMX19_01213 0.76 +0.7 1,264,631 + MPMX19_01213 0.76 +0.5 1,264,631 + MPMX19_01213 0.76 +0.0 1,264,631 + MPMX19_01213 0.76 -0.3 1,264,631 + MPMX19_01213 0.76 +0.3 1,264,631 + MPMX19_01213 0.76 -0.7 1,264,631 + MPMX19_01213 0.76 +0.3 1,264,632 - MPMX19_01213 0.76 -0.8 1,264,632 - MPMX19_01213 0.76 -0.4 1,264,632 - MPMX19_01213 0.76 -0.2 1,264,632 - MPMX19_01213 0.76 -1.2 1,264,632 - MPMX19_01213 0.76 -0.8 1,264,632 - MPMX19_01213 0.76 +0.3 1,264,632 - MPMX19_01213 0.76 +0.3 1,264,632 - MPMX19_01213 0.76 +0.6 1,264,632 - MPMX19_01213 0.76 +0.4 1,264,632 - MPMX19_01213 0.76 -1.2 1,264,632 - MPMX19_01213 0.76 -0.4 1,264,632 - MPMX19_01213 0.76 -1.2 1,264,754 + -1.0 1,264,754 + -0.1 1,264,755 - +0.2 1,264,755 - +0.3 1,264,755 - +0.4 1,264,786 + -2.5 1,264,786 + +0.6 1,264,786 + +1.3 1,264,786 + -0.9 1,264,787 - +1.4 1,264,787 - -0.2 1,265,601 - -2.1 1,265,601 - -0.2 1,265,601 - +2.1 1,265,670 + +0.2 1,265,670 + -0.2 1,265,671 - -0.9 1,265,671 - -1.6 1,265,692 + +0.3 1,265,692 + -0.6 1,265,692 + +1.2 1,265,692 + -0.7 1,265,693 - -0.5
Or see this region's nucleotide sequence