Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01213

Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01212 and MPMX19_01213 are separated by 90 nucleotidesMPMX19_01213 and MPMX19_01214 are separated by 51 nucleotidesMPMX19_01214 and MPMX19_01215 overlap by 29 nucleotides MPMX19_01212: MPMX19_01212 - Delta-aminolevulinic acid dehydratase, at 1,263,113 to 1,264,117 _01212 MPMX19_01213: MPMX19_01213 - hypothetical protein, at 1,264,208 to 1,264,765 _01213 MPMX19_01214: MPMX19_01214 - hypothetical protein, at 1,264,817 to 1,265,677 _01214 MPMX19_01215: MPMX19_01215 - hypothetical protein, at 1,265,649 to 1,266,299 _01215 Position (kb) 1264 1265Strain fitness (log2 ratio) -2 -1 0 1 2at 1264.173 kb on + strandat 1264.173 kb on + strandat 1264.174 kb on - strandat 1264.174 kb on - strandat 1264.174 kb on - strandat 1264.354 kb on + strand, within MPMX19_01213at 1264.354 kb on + strand, within MPMX19_01213at 1264.354 kb on + strand, within MPMX19_01213at 1264.354 kb on + strand, within MPMX19_01213at 1264.355 kb on - strand, within MPMX19_01213at 1264.355 kb on - strand, within MPMX19_01213at 1264.423 kb on - strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.430 kb on + strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.431 kb on - strand, within MPMX19_01213at 1264.631 kb on + strand, within MPMX19_01213at 1264.631 kb on + strand, within MPMX19_01213at 1264.631 kb on + strand, within MPMX19_01213at 1264.631 kb on + strand, within MPMX19_01213at 1264.631 kb on + strand, within MPMX19_01213at 1264.631 kb on + strand, within MPMX19_01213at 1264.631 kb on + strand, within MPMX19_01213at 1264.631 kb on + strand, within MPMX19_01213at 1264.631 kb on + strand, within MPMX19_01213at 1264.631 kb on + strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.632 kb on - strand, within MPMX19_01213at 1264.754 kb on + strandat 1264.754 kb on + strandat 1264.755 kb on - strandat 1264.755 kb on - strandat 1264.755 kb on - strandat 1264.786 kb on + strandat 1264.786 kb on + strandat 1264.786 kb on + strandat 1264.786 kb on + strandat 1264.787 kb on - strandat 1264.787 kb on - strandat 1265.601 kb on - strandat 1265.601 kb on - strandat 1265.601 kb on - strandat 1265.670 kb on + strandat 1265.670 kb on + strandat 1265.671 kb on - strandat 1265.671 kb on - strandat 1265.692 kb on + strandat 1265.692 kb on + strandat 1265.692 kb on + strandat 1265.692 kb on + strandat 1265.693 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
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1,264,173 + -1.1
1,264,173 + +0.8
1,264,174 - -2.4
1,264,174 - -0.8
1,264,174 - -0.6
1,264,354 + MPMX19_01213 0.26 -0.5
1,264,354 + MPMX19_01213 0.26 -1.1
1,264,354 + MPMX19_01213 0.26 +0.6
1,264,354 + MPMX19_01213 0.26 -0.6
1,264,355 - MPMX19_01213 0.26 +0.3
1,264,355 - MPMX19_01213 0.26 +0.1
1,264,423 - MPMX19_01213 0.39 +0.1
1,264,430 + MPMX19_01213 0.40 +1.2
1,264,430 + MPMX19_01213 0.40 -0.3
1,264,430 + MPMX19_01213 0.40 -1.0
1,264,430 + MPMX19_01213 0.40 -0.1
1,264,430 + MPMX19_01213 0.40 -1.4
1,264,430 + MPMX19_01213 0.40 +0.4
1,264,430 + MPMX19_01213 0.40 +0.7
1,264,430 + MPMX19_01213 0.40 -1.2
1,264,430 + MPMX19_01213 0.40 +1.5
1,264,430 + MPMX19_01213 0.40 -0.2
1,264,430 + MPMX19_01213 0.40 -0.0
1,264,430 + MPMX19_01213 0.40 +1.4
1,264,430 + MPMX19_01213 0.40 -0.6
1,264,430 + MPMX19_01213 0.40 +0.9
1,264,430 + MPMX19_01213 0.40 +0.4
1,264,430 + MPMX19_01213 0.40 +0.8
1,264,430 + MPMX19_01213 0.40 -0.2
1,264,430 + MPMX19_01213 0.40 +0.4
1,264,430 + MPMX19_01213 0.40 -1.4
1,264,431 - MPMX19_01213 0.40 -0.4
1,264,431 - MPMX19_01213 0.40 -0.2
1,264,431 - MPMX19_01213 0.40 -1.4
1,264,431 - MPMX19_01213 0.40 -0.8
1,264,431 - MPMX19_01213 0.40 -0.1
1,264,431 - MPMX19_01213 0.40 -1.1
1,264,431 - MPMX19_01213 0.40 -0.1
1,264,431 - MPMX19_01213 0.40 +0.3
1,264,431 - MPMX19_01213 0.40 -0.1
1,264,431 - MPMX19_01213 0.40 +0.3
1,264,431 - MPMX19_01213 0.40 -1.4
1,264,431 - MPMX19_01213 0.40 -1.5
1,264,431 - MPMX19_01213 0.40 +0.8
1,264,431 - MPMX19_01213 0.40 -0.6
1,264,631 + MPMX19_01213 0.76 +1.0
1,264,631 + MPMX19_01213 0.76 +0.1
1,264,631 + MPMX19_01213 0.76 +0.7
1,264,631 + MPMX19_01213 0.76 +0.7
1,264,631 + MPMX19_01213 0.76 +0.5
1,264,631 + MPMX19_01213 0.76 +0.0
1,264,631 + MPMX19_01213 0.76 -0.3
1,264,631 + MPMX19_01213 0.76 +0.3
1,264,631 + MPMX19_01213 0.76 -0.7
1,264,631 + MPMX19_01213 0.76 +0.3
1,264,632 - MPMX19_01213 0.76 -0.8
1,264,632 - MPMX19_01213 0.76 -0.4
1,264,632 - MPMX19_01213 0.76 -0.2
1,264,632 - MPMX19_01213 0.76 -1.2
1,264,632 - MPMX19_01213 0.76 -0.8
1,264,632 - MPMX19_01213 0.76 +0.3
1,264,632 - MPMX19_01213 0.76 +0.3
1,264,632 - MPMX19_01213 0.76 +0.6
1,264,632 - MPMX19_01213 0.76 +0.4
1,264,632 - MPMX19_01213 0.76 -1.2
1,264,632 - MPMX19_01213 0.76 -0.4
1,264,632 - MPMX19_01213 0.76 -1.2
1,264,754 + -1.0
1,264,754 + -0.1
1,264,755 - +0.2
1,264,755 - +0.3
1,264,755 - +0.4
1,264,786 + -2.5
1,264,786 + +0.6
1,264,786 + +1.3
1,264,786 + -0.9
1,264,787 - +1.4
1,264,787 - -0.2
1,265,601 - -2.1
1,265,601 - -0.2
1,265,601 - +2.1
1,265,670 + +0.2
1,265,670 + -0.2
1,265,671 - -0.9
1,265,671 - -1.6
1,265,692 + +0.3
1,265,692 + -0.6
1,265,692 + +1.2
1,265,692 + -0.7
1,265,693 - -0.5

Or see this region's nucleotide sequence