Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00835 and MPMX19_00836 are separated by 90 nucleotides MPMX19_00836 and MPMX19_00837 are separated by 266 nucleotides MPMX19_00837 and MPMX19_00838 are separated by 154 nucleotides
MPMX19_00835: MPMX19_00835 - D-erythronate 4-phosphate dehydrogenase, at 867,371 to 868,399
_00835
MPMX19_00836: MPMX19_00836 - hypothetical protein, at 868,490 to 869,131
_00836
MPMX19_00837: MPMX19_00837 - DNA-directed RNA polymerase subunit omega, at 869,398 to 869,832
_00837
MPMX19_00838: MPMX19_00838 - GTP pyrophosphokinase rsh, at 869,987 to 872,146
_00838
Position (kb) 869
870 Strain fitness (log2 ratio) -2
-1
0
1
2 at 868.398 kb on - strand at 868.398 kb on - strand at 868.398 kb on - strand at 868.408 kb on + strand at 868.409 kb on - strand at 868.409 kb on - strand at 868.409 kb on - strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.512 kb on + strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.513 kb on - strand at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.799 kb on + strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.800 kb on - strand, within MPMX19_00836 at 868.876 kb on - strand, within MPMX19_00836 at 868.876 kb on - strand, within MPMX19_00836 at 868.876 kb on - strand, within MPMX19_00836 at 868.876 kb on - strand, within MPMX19_00836 at 868.882 kb on + strand, within MPMX19_00836 at 868.884 kb on + strand, within MPMX19_00836 at 868.884 kb on + strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.885 kb on - strand, within MPMX19_00836 at 868.920 kb on + strand, within MPMX19_00836 at 868.920 kb on + strand, within MPMX19_00836 at 868.920 kb on + strand, within MPMX19_00836 at 868.920 kb on + strand, within MPMX19_00836 at 868.920 kb on + strand, within MPMX19_00836 at 868.921 kb on - strand, within MPMX19_00836 at 868.921 kb on - strand, within MPMX19_00836 at 868.921 kb on - strand, within MPMX19_00836 at 868.921 kb on - strand, within MPMX19_00836 at 868.947 kb on + strand, within MPMX19_00836 at 868.947 kb on + strand, within MPMX19_00836 at 868.947 kb on + strand, within MPMX19_00836 at 868.947 kb on + strand, within MPMX19_00836 at 868.947 kb on + strand, within MPMX19_00836 at 868.948 kb on - strand, within MPMX19_00836 at 868.948 kb on - strand, within MPMX19_00836 at 868.948 kb on - strand, within MPMX19_00836 at 868.948 kb on - strand, within MPMX19_00836 at 868.950 kb on + strand, within MPMX19_00836 at 868.950 kb on + strand, within MPMX19_00836 at 868.950 kb on + strand, within MPMX19_00836 at 868.950 kb on + strand, within MPMX19_00836 at 868.951 kb on - strand, within MPMX19_00836 at 868.951 kb on - strand, within MPMX19_00836 at 868.951 kb on - strand, within MPMX19_00836 at 868.951 kb on - strand, within MPMX19_00836 at 869.004 kb on + strand, within MPMX19_00836 at 869.167 kb on + strand at 869.168 kb on - strand at 869.209 kb on + strand at 869.209 kb on + strand at 869.210 kb on - strand at 869.214 kb on + strand at 869.214 kb on + strand at 869.214 kb on + strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.215 kb on - strand at 869.229 kb on + strand at 869.229 kb on + strand at 869.229 kb on + strand at 869.229 kb on + strand at 869.229 kb on + strand at 869.229 kb on + strand at 869.230 kb on - strand at 869.230 kb on - strand at 869.230 kb on - strand at 869.230 kb on - strand at 869.230 kb on - strand at 869.230 kb on - strand at 869.249 kb on + strand at 869.249 kb on + strand at 869.249 kb on + strand at 869.250 kb on - strand at 869.250 kb on - strand at 869.250 kb on - strand at 869.277 kb on + strand at 869.358 kb on + strand at 869.358 kb on + strand at 869.358 kb on + strand at 869.358 kb on + strand at 869.365 kb on + strand at 869.999 kb on + strand at 870.026 kb on + strand at 870.026 kb on + strand at 870.026 kb on + strand at 870.026 kb on + strand at 870.026 kb on + strand at 870.027 kb on - strand at 870.119 kb on + strand at 870.485 kb on + strand, within MPMX19_00838 at 870.486 kb on - strand, within MPMX19_00838 at 870.812 kb on + strand, within MPMX19_00838
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 868,398 - -0.6 868,398 - -0.0 868,398 - -0.8 868,408 + -1.5 868,409 - -0.4 868,409 - +0.2 868,409 - -0.4 868,512 + -0.9 868,512 + -1.0 868,512 + -1.9 868,512 + -1.5 868,512 + -0.7 868,512 + +0.1 868,512 + -0.5 868,512 + -0.3 868,512 + -1.0 868,512 + -0.4 868,512 + -1.8 868,512 + -0.8 868,512 + +0.5 868,512 + -1.9 868,512 + +1.0 868,512 + -1.9 868,512 + +0.3 868,512 + -0.7 868,512 + +0.9 868,512 + +0.4 868,513 - -0.7 868,513 - -0.7 868,513 - -0.7 868,513 - -1.0 868,513 - -0.5 868,513 - -0.7 868,513 - +0.8 868,513 - +2.1 868,513 - -0.6 868,513 - +0.8 868,513 - -0.2 868,513 - -0.9 868,513 - +0.4 868,513 - -0.4 868,513 - -0.7 868,513 - +0.7 868,799 + MPMX19_00836 0.48 +2.6 868,799 + MPMX19_00836 0.48 -1.1 868,799 + MPMX19_00836 0.48 -1.2 868,799 + MPMX19_00836 0.48 -0.0 868,799 + MPMX19_00836 0.48 -0.6 868,799 + MPMX19_00836 0.48 -0.3 868,799 + MPMX19_00836 0.48 -1.4 868,799 + MPMX19_00836 0.48 +0.3 868,799 + MPMX19_00836 0.48 +0.6 868,799 + MPMX19_00836 0.48 -0.9 868,799 + MPMX19_00836 0.48 -0.8 868,799 + MPMX19_00836 0.48 +0.6 868,800 - MPMX19_00836 0.48 -0.2 868,800 - MPMX19_00836 0.48 -2.0 868,800 - MPMX19_00836 0.48 -0.7 868,800 - MPMX19_00836 0.48 -0.8 868,800 - MPMX19_00836 0.48 -0.3 868,800 - MPMX19_00836 0.48 -0.5 868,800 - MPMX19_00836 0.48 +1.6 868,800 - MPMX19_00836 0.48 -0.2 868,800 - MPMX19_00836 0.48 +1.6 868,800 - MPMX19_00836 0.48 -0.7 868,800 - MPMX19_00836 0.48 -1.6 868,800 - MPMX19_00836 0.48 +0.8 868,800 - MPMX19_00836 0.48 -1.6 868,800 - MPMX19_00836 0.48 -1.0 868,800 - MPMX19_00836 0.48 +0.6 868,876 - MPMX19_00836 0.60 -0.4 868,876 - MPMX19_00836 0.60 +1.3 868,876 - MPMX19_00836 0.60 +0.2 868,876 - MPMX19_00836 0.60 -2.6 868,882 + MPMX19_00836 0.61 +1.6 868,884 + MPMX19_00836 0.61 -1.3 868,884 + MPMX19_00836 0.61 -0.7 868,885 - MPMX19_00836 0.62 -0.9 868,885 - MPMX19_00836 0.62 -0.2 868,885 - MPMX19_00836 0.62 -0.3 868,885 - MPMX19_00836 0.62 -2.2 868,885 - MPMX19_00836 0.62 -1.4 868,885 - MPMX19_00836 0.62 -0.6 868,885 - MPMX19_00836 0.62 -1.4 868,920 + MPMX19_00836 0.67 -1.7 868,920 + MPMX19_00836 0.67 +0.1 868,920 + MPMX19_00836 0.67 -0.4 868,920 + MPMX19_00836 0.67 -1.0 868,920 + MPMX19_00836 0.67 -0.1 868,921 - MPMX19_00836 0.67 -0.9 868,921 - MPMX19_00836 0.67 +0.3 868,921 - MPMX19_00836 0.67 -0.3 868,921 - MPMX19_00836 0.67 -0.6 868,947 + MPMX19_00836 0.71 -2.2 868,947 + MPMX19_00836 0.71 -0.6 868,947 + MPMX19_00836 0.71 +0.3 868,947 + MPMX19_00836 0.71 -2.0 868,947 + MPMX19_00836 0.71 -1.3 868,948 - MPMX19_00836 0.71 +0.4 868,948 - MPMX19_00836 0.71 +0.1 868,948 - MPMX19_00836 0.71 +1.0 868,948 - MPMX19_00836 0.71 -0.4 868,950 + MPMX19_00836 0.72 +0.3 868,950 + MPMX19_00836 0.72 -1.7 868,950 + MPMX19_00836 0.72 -2.0 868,950 + MPMX19_00836 0.72 +1.0 868,951 - MPMX19_00836 0.72 -1.6 868,951 - MPMX19_00836 0.72 +1.3 868,951 - MPMX19_00836 0.72 +0.7 868,951 - MPMX19_00836 0.72 -0.5 869,004 + MPMX19_00836 0.80 +0.8 869,167 + -1.8 869,168 - -0.9 869,209 + +0.2 869,209 + +0.2 869,210 - -0.3 869,214 + -1.6 869,214 + -0.7 869,214 + -2.3 869,215 - -0.9 869,215 - +0.2 869,215 - -0.3 869,215 - +1.1 869,215 - +0.3 869,215 - +0.6 869,215 - +1.3 869,229 + -0.4 869,229 + +1.6 869,229 + -2.0 869,229 + -1.2 869,229 + +0.6 869,229 + -1.2 869,230 - -0.8 869,230 - -0.0 869,230 - -0.9 869,230 - +0.6 869,230 - +1.8 869,230 - -1.5 869,249 + +0.6 869,249 + +0.6 869,249 + -1.7 869,250 - -0.4 869,250 - +0.1 869,250 - -0.8 869,277 + -0.7 869,358 + -0.6 869,358 + -0.4 869,358 + -0.1 869,358 + -0.9 869,365 + +0.3 869,999 + -2.1 870,026 + -0.6 870,026 + -2.1 870,026 + -0.2 870,026 + -1.7 870,026 + -0.6 870,027 - -1.0 870,119 + -2.4 870,485 + MPMX19_00838 0.23 -1.0 870,486 - MPMX19_00838 0.23 -2.1 870,812 + MPMX19_00838 0.38 -0.4
Or see this region's nucleotide sequence