Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00630 and MPMX19_00631 are separated by 171 nucleotides MPMX19_00631 and MPMX19_00632 are separated by 66 nucleotides MPMX19_00632 and MPMX19_00633 are separated by 196 nucleotides
MPMX19_00630: MPMX19_00630 - hypothetical protein, at 646,928 to 648,427
_00630
MPMX19_00631: MPMX19_00631 - putative MFS-type transporter, at 648,599 to 649,861
_00631
MPMX19_00632: MPMX19_00632 - Intermembrane phospholipid transport system binding protein MlaC, at 649,928 to 650,557
_00632
MPMX19_00633: MPMX19_00633 - Intermembrane phospholipid transport system lipoprotein MlaA, at 650,754 to 651,539
_00633
Position (kb) 648
649
650 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.757 kb on + strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 647.758 kb on - strand, within MPMX19_00630 at 648.453 kb on + strand at 648.453 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.596 kb on + strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.597 kb on - strand at 648.671 kb on + strand at 648.672 kb on - strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.683 kb on + strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.684 kb on - strand at 648.800 kb on + strand, within MPMX19_00631 at 648.800 kb on + strand, within MPMX19_00631 at 648.801 kb on - strand, within MPMX19_00631 at 648.801 kb on - strand, within MPMX19_00631 at 648.801 kb on - strand, within MPMX19_00631 at 648.801 kb on - strand, within MPMX19_00631 at 648.801 kb on - strand, within MPMX19_00631 at 648.813 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.058 kb on + strand, within MPMX19_00631 at 649.059 kb on - strand, within MPMX19_00631 at 649.059 kb on - strand, within MPMX19_00631 at 649.059 kb on - strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.490 kb on + strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.491 kb on - strand, within MPMX19_00631 at 649.706 kb on + strand, within MPMX19_00631 at 649.706 kb on + strand, within MPMX19_00631 at 649.706 kb on + strand, within MPMX19_00631 at 649.706 kb on + strand, within MPMX19_00631 at 649.706 kb on + strand, within MPMX19_00631 at 649.706 kb on + strand, within MPMX19_00631 at 649.707 kb on - strand, within MPMX19_00631 at 649.707 kb on - strand, within MPMX19_00631 at 649.707 kb on - strand, within MPMX19_00631 at 649.903 kb on + strand at 650.226 kb on + strand, within MPMX19_00632 at 650.226 kb on + strand, within MPMX19_00632 at 650.226 kb on + strand, within MPMX19_00632 at 650.226 kb on + strand, within MPMX19_00632 at 650.227 kb on - strand, within MPMX19_00632 at 650.227 kb on - strand, within MPMX19_00632 at 650.227 kb on - strand, within MPMX19_00632 at 650.262 kb on + strand, within MPMX19_00632 at 650.325 kb on + strand, within MPMX19_00632 at 650.325 kb on + strand, within MPMX19_00632 at 650.325 kb on + strand, within MPMX19_00632 at 650.325 kb on + strand, within MPMX19_00632 at 650.325 kb on + strand, within MPMX19_00632 at 650.325 kb on + strand, within MPMX19_00632 at 650.326 kb on - strand, within MPMX19_00632 at 650.326 kb on - strand, within MPMX19_00632 at 650.346 kb on + strand, within MPMX19_00632 at 650.347 kb on - strand, within MPMX19_00632 at 650.347 kb on - strand, within MPMX19_00632 at 650.723 kb on + strand at 650.723 kb on + strand at 650.723 kb on + strand at 650.723 kb on + strand at 650.724 kb on - strand at 650.724 kb on - strand at 650.724 kb on - strand at 650.724 kb on - strand at 650.724 kb on - strand at 650.724 kb on - strand at 650.799 kb on - strand at 650.799 kb on - strand at 650.843 kb on - strand, within MPMX19_00633
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 647,757 + MPMX19_00630 0.55 +0.1 647,757 + MPMX19_00630 0.55 +0.1 647,757 + MPMX19_00630 0.55 -0.9 647,757 + MPMX19_00630 0.55 +2.2 647,757 + MPMX19_00630 0.55 -1.4 647,757 + MPMX19_00630 0.55 -1.5 647,757 + MPMX19_00630 0.55 -1.2 647,757 + MPMX19_00630 0.55 -0.2 647,757 + MPMX19_00630 0.55 +0.1 647,757 + MPMX19_00630 0.55 +0.3 647,758 - MPMX19_00630 0.55 -0.6 647,758 - MPMX19_00630 0.55 -1.4 647,758 - MPMX19_00630 0.55 -0.4 647,758 - MPMX19_00630 0.55 -0.2 647,758 - MPMX19_00630 0.55 +0.4 647,758 - MPMX19_00630 0.55 +0.2 647,758 - MPMX19_00630 0.55 -0.5 647,758 - MPMX19_00630 0.55 -0.9 647,758 - MPMX19_00630 0.55 -0.7 647,758 - MPMX19_00630 0.55 -1.2 648,453 + -0.5 648,453 + -1.3 648,596 + -1.8 648,596 + -1.6 648,596 + -0.2 648,596 + +0.3 648,596 + -1.8 648,596 + -1.4 648,596 + +0.2 648,596 + -0.8 648,596 + -0.4 648,596 + -0.8 648,596 + -1.2 648,596 + +0.2 648,596 + +0.4 648,596 + -0.2 648,596 + +0.2 648,596 + -0.9 648,596 + +0.6 648,596 + -0.2 648,596 + -1.6 648,596 + -1.5 648,596 + +0.6 648,596 + +0.8 648,596 + -1.9 648,596 + +0.3 648,597 - -1.0 648,597 - -0.3 648,597 - -0.4 648,597 - +0.2 648,597 - +0.8 648,597 - -0.1 648,597 - -0.4 648,597 - +0.3 648,597 - -1.4 648,597 - +0.2 648,597 - -2.3 648,597 - -1.4 648,597 - -0.4 648,597 - +1.0 648,597 - -0.9 648,597 - -0.4 648,671 + -0.1 648,672 - -0.4 648,683 + -1.9 648,683 + -0.2 648,683 + +0.2 648,683 + +0.4 648,683 + -2.1 648,683 + -0.5 648,683 + -1.7 648,683 + -0.1 648,683 + +0.1 648,683 + -0.8 648,683 + -0.6 648,683 + -0.2 648,684 - +0.2 648,684 - +0.5 648,684 - +0.5 648,684 - -1.4 648,684 - -0.8 648,684 - -0.3 648,684 - +0.5 648,684 - -1.0 648,684 - +0.4 648,684 - +0.3 648,684 - -0.8 648,684 - +0.4 648,684 - +0.2 648,684 - -1.1 648,684 - -0.9 648,800 + MPMX19_00631 0.16 +0.6 648,800 + MPMX19_00631 0.16 -1.5 648,801 - MPMX19_00631 0.16 -2.1 648,801 - MPMX19_00631 0.16 +0.5 648,801 - MPMX19_00631 0.16 -1.9 648,801 - MPMX19_00631 0.16 +0.3 648,801 - MPMX19_00631 0.16 -1.7 648,813 + MPMX19_00631 0.17 +0.4 649,058 + MPMX19_00631 0.36 -1.2 649,058 + MPMX19_00631 0.36 -0.3 649,058 + MPMX19_00631 0.36 -1.6 649,058 + MPMX19_00631 0.36 -0.0 649,058 + MPMX19_00631 0.36 -1.2 649,058 + MPMX19_00631 0.36 -1.3 649,058 + MPMX19_00631 0.36 -1.4 649,058 + MPMX19_00631 0.36 +2.0 649,058 + MPMX19_00631 0.36 -1.9 649,059 - MPMX19_00631 0.36 -0.0 649,059 - MPMX19_00631 0.36 -1.5 649,059 - MPMX19_00631 0.36 -1.2 649,490 + MPMX19_00631 0.71 -0.5 649,490 + MPMX19_00631 0.71 -0.1 649,490 + MPMX19_00631 0.71 -1.6 649,490 + MPMX19_00631 0.71 +0.4 649,490 + MPMX19_00631 0.71 +1.1 649,490 + MPMX19_00631 0.71 -0.9 649,490 + MPMX19_00631 0.71 +0.2 649,490 + MPMX19_00631 0.71 -1.8 649,490 + MPMX19_00631 0.71 +1.1 649,490 + MPMX19_00631 0.71 -0.9 649,490 + MPMX19_00631 0.71 -0.2 649,490 + MPMX19_00631 0.71 -0.5 649,490 + MPMX19_00631 0.71 -0.7 649,490 + MPMX19_00631 0.71 -0.7 649,490 + MPMX19_00631 0.71 -1.7 649,490 + MPMX19_00631 0.71 -0.1 649,490 + MPMX19_00631 0.71 -3.2 649,491 - MPMX19_00631 0.71 -1.5 649,491 - MPMX19_00631 0.71 -1.3 649,491 - MPMX19_00631 0.71 -0.2 649,491 - MPMX19_00631 0.71 -0.4 649,491 - MPMX19_00631 0.71 -1.4 649,491 - MPMX19_00631 0.71 -0.8 649,491 - MPMX19_00631 0.71 -0.7 649,491 - MPMX19_00631 0.71 -0.4 649,491 - MPMX19_00631 0.71 -0.2 649,491 - MPMX19_00631 0.71 +0.9 649,491 - MPMX19_00631 0.71 -1.0 649,491 - MPMX19_00631 0.71 +0.2 649,491 - MPMX19_00631 0.71 -0.3 649,706 + MPMX19_00631 0.88 +0.5 649,706 + MPMX19_00631 0.88 -1.7 649,706 + MPMX19_00631 0.88 -0.5 649,706 + MPMX19_00631 0.88 -0.2 649,706 + MPMX19_00631 0.88 -0.6 649,706 + MPMX19_00631 0.88 -1.1 649,707 - MPMX19_00631 0.88 +0.2 649,707 - MPMX19_00631 0.88 -2.6 649,707 - MPMX19_00631 0.88 -2.8 649,903 + +1.2 650,226 + MPMX19_00632 0.47 -0.5 650,226 + MPMX19_00632 0.47 -0.4 650,226 + MPMX19_00632 0.47 -2.4 650,226 + MPMX19_00632 0.47 -1.0 650,227 - MPMX19_00632 0.47 -2.9 650,227 - MPMX19_00632 0.47 -1.7 650,227 - MPMX19_00632 0.47 -0.6 650,262 + MPMX19_00632 0.53 +0.3 650,325 + MPMX19_00632 0.63 -0.3 650,325 + MPMX19_00632 0.63 +1.0 650,325 + MPMX19_00632 0.63 -0.9 650,325 + MPMX19_00632 0.63 -0.4 650,325 + MPMX19_00632 0.63 -0.6 650,325 + MPMX19_00632 0.63 +0.3 650,326 - MPMX19_00632 0.63 +1.2 650,326 - MPMX19_00632 0.63 -2.4 650,346 + MPMX19_00632 0.66 +1.1 650,347 - MPMX19_00632 0.67 +0.4 650,347 - MPMX19_00632 0.67 +0.5 650,723 + +0.6 650,723 + -1.1 650,723 + -1.2 650,723 + -0.7 650,724 - +1.0 650,724 - -0.6 650,724 - +0.1 650,724 - +0.2 650,724 - -0.6 650,724 - +0.6 650,799 - -1.2 650,799 - -1.4 650,843 - MPMX19_00633 0.11 -0.3
Or see this region's nucleotide sequence