Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00611 and MPMX19_00612 are separated by 219 nucleotides MPMX19_00612 and MPMX19_00613 are separated by 31 nucleotides
MPMX19_00611: MPMX19_00611 - (3S)-malyl-CoA thioesterase, at 624,968 to 625,837
_00611
MPMX19_00612: MPMX19_00612 - Pyridoxal kinase PdxY, at 626,057 to 626,917
_00612
MPMX19_00613: MPMX19_00613 - Sensor histidine kinase RcsC, at 626,949 to 629,123
_00613
Position (kb) 626
627 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.654 kb on - strand, within MPMX19_00611 at 625.654 kb on - strand, within MPMX19_00611 at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.879 kb on + strand at 626.023 kb on + strand at 626.023 kb on + strand at 626.024 kb on - strand at 626.024 kb on - strand at 626.044 kb on + strand at 626.044 kb on + strand at 626.045 kb on - strand at 626.045 kb on - strand at 626.045 kb on - strand at 626.045 kb on - strand at 626.045 kb on - strand at 626.093 kb on + strand at 626.093 kb on + strand at 626.093 kb on + strand at 626.093 kb on + strand at 626.093 kb on + strand at 626.094 kb on - strand at 626.094 kb on - strand at 626.094 kb on - strand at 626.094 kb on - strand at 626.094 kb on - strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.099 kb on + strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.100 kb on - strand at 626.193 kb on - strand, within MPMX19_00612 at 626.230 kb on + strand, within MPMX19_00612 at 626.230 kb on + strand, within MPMX19_00612 at 626.230 kb on + strand, within MPMX19_00612 at 626.230 kb on + strand, within MPMX19_00612 at 626.230 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.300 kb on + strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.301 kb on - strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.302 kb on + strand, within MPMX19_00612 at 626.303 kb on - strand, within MPMX19_00612 at 626.303 kb on - strand, within MPMX19_00612 at 626.303 kb on - strand, within MPMX19_00612 at 626.303 kb on - strand, within MPMX19_00612 at 626.303 kb on - strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.378 kb on + strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.379 kb on - strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.507 kb on + strand, within MPMX19_00612 at 626.508 kb on - strand, within MPMX19_00612 at 626.508 kb on - strand, within MPMX19_00612 at 626.520 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.750 kb on + strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.751 kb on - strand, within MPMX19_00612 at 626.832 kb on + strand at 626.833 kb on - strand at 627.128 kb on - strand at 627.258 kb on + strand, within MPMX19_00613 at 627.258 kb on + strand, within MPMX19_00613 at 627.259 kb on - strand, within MPMX19_00613 at 627.259 kb on - strand, within MPMX19_00613 at 627.259 kb on - strand, within MPMX19_00613 at 627.259 kb on - strand, within MPMX19_00613 at 627.259 kb on - strand, within MPMX19_00613 at 627.421 kb on - strand, within MPMX19_00613 at 627.421 kb on - strand, within MPMX19_00613
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 625,284 + MPMX19_00611 0.36 +1.0 625,284 + MPMX19_00611 0.36 -1.7 625,284 + MPMX19_00611 0.36 -0.9 625,284 + MPMX19_00611 0.36 -0.5 625,284 + MPMX19_00611 0.36 +0.1 625,284 + MPMX19_00611 0.36 +0.6 625,284 + MPMX19_00611 0.36 +0.9 625,285 - MPMX19_00611 0.36 -0.4 625,285 - MPMX19_00611 0.36 +0.7 625,285 - MPMX19_00611 0.36 +0.3 625,285 - MPMX19_00611 0.36 +0.3 625,285 - MPMX19_00611 0.36 -0.1 625,599 + MPMX19_00611 0.73 -0.0 625,599 + MPMX19_00611 0.73 +1.1 625,599 + MPMX19_00611 0.73 -0.4 625,599 + MPMX19_00611 0.73 -0.8 625,600 - MPMX19_00611 0.73 -0.9 625,600 - MPMX19_00611 0.73 +0.1 625,600 - MPMX19_00611 0.73 +0.1 625,654 - MPMX19_00611 0.79 -0.4 625,654 - MPMX19_00611 0.79 -0.1 625,800 + -0.4 625,800 + -1.4 625,800 + +0.1 625,800 + -0.7 625,800 + -0.4 625,800 + +0.4 625,800 + +0.4 625,800 + +0.4 625,800 + +0.4 625,800 + +1.9 625,800 + -1.5 625,800 + +0.6 625,800 + +0.5 625,800 + -0.5 625,800 + -0.0 625,800 + -1.5 625,800 + -0.1 625,800 + -2.1 625,800 + +0.3 625,800 + -0.6 625,800 + -0.7 625,800 + -1.2 625,800 + -2.4 625,801 - -0.5 625,801 - +0.7 625,801 - -0.7 625,801 - -1.8 625,801 - +0.6 625,801 - -1.2 625,801 - -0.5 625,801 - -2.9 625,801 - +0.1 625,801 - -1.1 625,801 - -1.2 625,801 - +1.3 625,801 - +0.3 625,801 - +0.1 625,801 - -1.3 625,801 - -0.4 625,801 - +0.3 625,801 - -0.2 625,801 - +0.1 625,801 - +0.5 625,801 - -0.7 625,801 - -0.7 625,801 - +1.4 625,801 - -1.4 625,801 - +0.2 625,801 - -1.9 625,801 - -1.4 625,879 + -1.2 626,023 + -0.2 626,023 + -0.2 626,024 - -1.3 626,024 - +1.3 626,044 + -1.1 626,044 + -0.1 626,045 - -2.1 626,045 - -0.8 626,045 - -0.9 626,045 - -0.8 626,045 - +0.2 626,093 + -2.2 626,093 + -0.4 626,093 + -1.8 626,093 + -1.8 626,093 + -0.5 626,094 - -0.7 626,094 - -1.7 626,094 - -0.2 626,094 - -0.9 626,094 - -0.7 626,099 + +0.5 626,099 + +2.2 626,099 + +0.4 626,099 + -1.7 626,099 + -0.8 626,099 + +0.2 626,099 + +0.4 626,099 + -1.4 626,099 + -0.2 626,099 + +0.1 626,099 + -0.0 626,099 + -1.8 626,099 + -0.9 626,099 + +0.1 626,099 + -0.1 626,099 + -1.4 626,099 + -0.7 626,099 + -0.2 626,100 - -0.2 626,100 - +0.5 626,100 - -1.5 626,100 - -0.4 626,100 - -1.1 626,100 - -1.9 626,100 - +0.1 626,100 - -1.5 626,100 - -0.0 626,100 - +0.1 626,100 - -2.4 626,193 - MPMX19_00612 0.16 -1.9 626,230 + MPMX19_00612 0.20 -0.3 626,230 + MPMX19_00612 0.20 -0.9 626,230 + MPMX19_00612 0.20 -0.9 626,230 + MPMX19_00612 0.20 +0.4 626,230 + MPMX19_00612 0.20 -0.4 626,300 + MPMX19_00612 0.28 -0.8 626,300 + MPMX19_00612 0.28 -0.7 626,300 + MPMX19_00612 0.28 +0.3 626,300 + MPMX19_00612 0.28 -0.5 626,300 + MPMX19_00612 0.28 -1.1 626,300 + MPMX19_00612 0.28 -1.3 626,300 + MPMX19_00612 0.28 -0.0 626,300 + MPMX19_00612 0.28 +0.1 626,300 + MPMX19_00612 0.28 +0.4 626,300 + MPMX19_00612 0.28 -0.7 626,301 - MPMX19_00612 0.28 -0.9 626,301 - MPMX19_00612 0.28 +0.5 626,301 - MPMX19_00612 0.28 -1.5 626,301 - MPMX19_00612 0.28 +0.6 626,301 - MPMX19_00612 0.28 -0.1 626,301 - MPMX19_00612 0.28 +0.3 626,301 - MPMX19_00612 0.28 -0.3 626,301 - MPMX19_00612 0.28 -0.8 626,301 - MPMX19_00612 0.28 -2.5 626,301 - MPMX19_00612 0.28 -0.1 626,301 - MPMX19_00612 0.28 +0.2 626,301 - MPMX19_00612 0.28 -0.2 626,302 + MPMX19_00612 0.28 -0.1 626,302 + MPMX19_00612 0.28 +0.1 626,302 + MPMX19_00612 0.28 -0.0 626,302 + MPMX19_00612 0.28 -0.9 626,302 + MPMX19_00612 0.28 +0.2 626,302 + MPMX19_00612 0.28 -0.2 626,302 + MPMX19_00612 0.28 -1.7 626,303 - MPMX19_00612 0.29 -0.1 626,303 - MPMX19_00612 0.29 -0.4 626,303 - MPMX19_00612 0.29 +0.6 626,303 - MPMX19_00612 0.29 -1.7 626,303 - MPMX19_00612 0.29 +3.0 626,378 + MPMX19_00612 0.37 -0.0 626,378 + MPMX19_00612 0.37 -0.9 626,378 + MPMX19_00612 0.37 -0.1 626,378 + MPMX19_00612 0.37 -0.6 626,378 + MPMX19_00612 0.37 +0.1 626,378 + MPMX19_00612 0.37 -2.2 626,378 + MPMX19_00612 0.37 -0.2 626,378 + MPMX19_00612 0.37 -1.8 626,378 + MPMX19_00612 0.37 -1.2 626,379 - MPMX19_00612 0.37 -1.4 626,379 - MPMX19_00612 0.37 -0.7 626,379 - MPMX19_00612 0.37 -2.2 626,379 - MPMX19_00612 0.37 -0.2 626,379 - MPMX19_00612 0.37 -0.0 626,379 - MPMX19_00612 0.37 +0.6 626,379 - MPMX19_00612 0.37 -0.7 626,379 - MPMX19_00612 0.37 -1.5 626,507 + MPMX19_00612 0.52 -0.9 626,507 + MPMX19_00612 0.52 +1.1 626,507 + MPMX19_00612 0.52 -1.3 626,507 + MPMX19_00612 0.52 -0.5 626,507 + MPMX19_00612 0.52 +0.1 626,507 + MPMX19_00612 0.52 -0.2 626,507 + MPMX19_00612 0.52 -1.7 626,507 + MPMX19_00612 0.52 +0.0 626,508 - MPMX19_00612 0.52 -1.4 626,508 - MPMX19_00612 0.52 -1.8 626,520 + MPMX19_00612 0.54 -0.1 626,750 + MPMX19_00612 0.80 +0.0 626,750 + MPMX19_00612 0.80 -0.1 626,750 + MPMX19_00612 0.80 -1.5 626,750 + MPMX19_00612 0.80 -1.2 626,750 + MPMX19_00612 0.80 -0.1 626,750 + MPMX19_00612 0.80 -1.7 626,750 + MPMX19_00612 0.80 +0.1 626,750 + MPMX19_00612 0.80 -1.2 626,750 + MPMX19_00612 0.80 +0.5 626,751 - MPMX19_00612 0.81 -0.7 626,751 - MPMX19_00612 0.81 +0.3 626,751 - MPMX19_00612 0.81 -0.5 626,751 - MPMX19_00612 0.81 -0.7 626,751 - MPMX19_00612 0.81 -0.4 626,751 - MPMX19_00612 0.81 -0.5 626,832 + -0.4 626,833 - -1.2 627,128 - -0.4 627,258 + MPMX19_00613 0.14 +0.3 627,258 + MPMX19_00613 0.14 -0.1 627,259 - MPMX19_00613 0.14 -0.4 627,259 - MPMX19_00613 0.14 +0.2 627,259 - MPMX19_00613 0.14 -0.5 627,259 - MPMX19_00613 0.14 +1.5 627,259 - MPMX19_00613 0.14 -1.5 627,421 - MPMX19_00613 0.22 +1.0 627,421 - MPMX19_00613 0.22 -1.2
Or see this region's nucleotide sequence