Experiment: NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00608 and MPMX19_00609 are separated by 526 nucleotides MPMX19_00609 and MPMX19_00610 are separated by 33 nucleotides MPMX19_00610 and MPMX19_00611 are separated by 28 nucleotides
MPMX19_00608: MPMX19_00608 - hypothetical protein, at 622,269 to 622,559
_00608
MPMX19_00609: MPMX19_00609 - Chemotaxis protein CheY, at 623,086 to 623,481
_00609
MPMX19_00610: MPMX19_00610 - hypothetical protein, at 623,515 to 624,939
_00610
MPMX19_00611: MPMX19_00611 - (3S)-malyl-CoA thioesterase, at 624,968 to 625,837
_00611
Position (kb) 623
624
625 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.628 kb on + strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.644 kb on - strand at 622.780 kb on - strand at 622.780 kb on - strand at 622.839 kb on + strand at 622.840 kb on - strand at 622.859 kb on - strand at 622.861 kb on - strand at 622.861 kb on - strand at 622.956 kb on + strand at 622.995 kb on + strand at 622.996 kb on - strand at 622.996 kb on - strand at 622.996 kb on - strand at 622.997 kb on + strand at 622.998 kb on - strand at 622.998 kb on - strand at 623.000 kb on + strand at 623.000 kb on + strand at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.427 kb on + strand, within MPMX19_00609 at 623.428 kb on - strand, within MPMX19_00609 at 623.428 kb on - strand, within MPMX19_00609 at 623.428 kb on - strand, within MPMX19_00609 at 623.428 kb on - strand, within MPMX19_00609 at 623.428 kb on - strand, within MPMX19_00609 at 623.512 kb on - strand at 623.606 kb on + strand at 623.606 kb on + strand at 623.607 kb on - strand at 623.885 kb on + strand, within MPMX19_00610 at 623.885 kb on + strand, within MPMX19_00610 at 623.885 kb on + strand, within MPMX19_00610 at 623.885 kb on + strand, within MPMX19_00610 at 623.885 kb on + strand, within MPMX19_00610 at 623.886 kb on - strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.259 kb on + strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.260 kb on - strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.261 kb on + strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.262 kb on - strand, within MPMX19_00610 at 624.275 kb on + strand, within MPMX19_00610 at 624.275 kb on + strand, within MPMX19_00610 at 624.276 kb on - strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.511 kb on + strand, within MPMX19_00610 at 624.512 kb on - strand, within MPMX19_00610 at 624.512 kb on - strand, within MPMX19_00610 at 624.512 kb on - strand, within MPMX19_00610 at 624.512 kb on - strand, within MPMX19_00610 at 624.512 kb on - strand, within MPMX19_00610 at 624.604 kb on + strand, within MPMX19_00610 at 624.604 kb on + strand, within MPMX19_00610 at 624.604 kb on + strand, within MPMX19_00610 at 624.604 kb on + strand, within MPMX19_00610 at 624.605 kb on - strand, within MPMX19_00610 at 624.605 kb on - strand, within MPMX19_00610 at 624.605 kb on - strand, within MPMX19_00610 at 624.605 kb on - strand, within MPMX19_00610 at 624.916 kb on + strand at 624.916 kb on + strand at 624.917 kb on - strand at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.284 kb on + strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.285 kb on - strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.599 kb on + strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.600 kb on - strand, within MPMX19_00611 at 625.654 kb on - strand, within MPMX19_00611 at 625.654 kb on - strand, within MPMX19_00611 at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.800 kb on + strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.801 kb on - strand at 625.879 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum remove 622,535 + -0.4 622,535 + +0.4 622,535 + -1.6 622,535 + +0.3 622,535 + -0.4 622,536 - -1.7 622,536 - +1.1 622,536 - -1.2 622,536 - -0.7 622,628 + -1.2 622,629 - -1.3 622,629 - -0.0 622,629 - -1.2 622,629 - -0.5 622,630 + -0.6 622,630 + -0.4 622,630 + -0.6 622,630 + +0.3 622,644 - -1.4 622,780 - -1.0 622,780 - +1.6 622,839 + -0.4 622,840 - +0.5 622,859 - +0.8 622,861 - -2.1 622,861 - -2.2 622,956 + -0.5 622,995 + +0.3 622,996 - +1.1 622,996 - -0.2 622,996 - -1.4 622,997 + -0.1 622,998 - -0.7 622,998 - -0.1 623,000 + -0.5 623,000 + +1.1 623,427 + MPMX19_00609 0.86 +0.5 623,427 + MPMX19_00609 0.86 -3.6 623,427 + MPMX19_00609 0.86 -2.5 623,427 + MPMX19_00609 0.86 -0.1 623,427 + MPMX19_00609 0.86 -0.5 623,427 + MPMX19_00609 0.86 -2.3 623,427 + MPMX19_00609 0.86 -0.4 623,427 + MPMX19_00609 0.86 -0.5 623,428 - MPMX19_00609 0.86 -0.5 623,428 - MPMX19_00609 0.86 +0.9 623,428 - MPMX19_00609 0.86 -1.2 623,428 - MPMX19_00609 0.86 +0.3 623,428 - MPMX19_00609 0.86 -1.1 623,512 - -0.7 623,606 + +0.8 623,606 + -1.2 623,607 - -1.5 623,885 + MPMX19_00610 0.26 +0.7 623,885 + MPMX19_00610 0.26 -1.9 623,885 + MPMX19_00610 0.26 -1.7 623,885 + MPMX19_00610 0.26 -1.5 623,885 + MPMX19_00610 0.26 -0.7 623,886 - MPMX19_00610 0.26 -1.4 624,259 + MPMX19_00610 0.52 -2.3 624,259 + MPMX19_00610 0.52 -0.9 624,259 + MPMX19_00610 0.52 -1.7 624,259 + MPMX19_00610 0.52 +0.5 624,259 + MPMX19_00610 0.52 -1.8 624,259 + MPMX19_00610 0.52 -0.3 624,259 + MPMX19_00610 0.52 +1.2 624,259 + MPMX19_00610 0.52 -1.6 624,259 + MPMX19_00610 0.52 +0.5 624,259 + MPMX19_00610 0.52 +0.4 624,259 + MPMX19_00610 0.52 +0.1 624,259 + MPMX19_00610 0.52 -0.9 624,259 + MPMX19_00610 0.52 -1.4 624,259 + MPMX19_00610 0.52 -0.7 624,259 + MPMX19_00610 0.52 -0.5 624,259 + MPMX19_00610 0.52 +0.8 624,259 + MPMX19_00610 0.52 -0.7 624,259 + MPMX19_00610 0.52 +0.7 624,259 + MPMX19_00610 0.52 +0.4 624,259 + MPMX19_00610 0.52 -1.7 624,259 + MPMX19_00610 0.52 +0.4 624,259 + MPMX19_00610 0.52 -0.0 624,259 + MPMX19_00610 0.52 -1.2 624,259 + MPMX19_00610 0.52 +0.6 624,259 + MPMX19_00610 0.52 -0.5 624,259 + MPMX19_00610 0.52 -1.8 624,259 + MPMX19_00610 0.52 -1.1 624,259 + MPMX19_00610 0.52 -1.4 624,259 + MPMX19_00610 0.52 -1.2 624,259 + MPMX19_00610 0.52 -2.2 624,259 + MPMX19_00610 0.52 +0.3 624,259 + MPMX19_00610 0.52 +0.6 624,259 + MPMX19_00610 0.52 +0.4 624,259 + MPMX19_00610 0.52 -0.2 624,259 + MPMX19_00610 0.52 -0.5 624,259 + MPMX19_00610 0.52 -1.5 624,259 + MPMX19_00610 0.52 -0.4 624,260 - MPMX19_00610 0.52 +0.1 624,260 - MPMX19_00610 0.52 +0.8 624,260 - MPMX19_00610 0.52 -0.7 624,260 - MPMX19_00610 0.52 -1.1 624,260 - MPMX19_00610 0.52 +0.5 624,260 - MPMX19_00610 0.52 +0.5 624,260 - MPMX19_00610 0.52 -0.6 624,260 - MPMX19_00610 0.52 -1.9 624,260 - MPMX19_00610 0.52 +1.3 624,260 - MPMX19_00610 0.52 -1.5 624,260 - MPMX19_00610 0.52 +0.9 624,260 - MPMX19_00610 0.52 -0.1 624,260 - MPMX19_00610 0.52 +2.1 624,260 - MPMX19_00610 0.52 -1.4 624,260 - MPMX19_00610 0.52 +0.2 624,260 - MPMX19_00610 0.52 +0.1 624,260 - MPMX19_00610 0.52 +1.1 624,260 - MPMX19_00610 0.52 -0.7 624,260 - MPMX19_00610 0.52 -0.3 624,260 - MPMX19_00610 0.52 -1.2 624,260 - MPMX19_00610 0.52 -1.8 624,260 - MPMX19_00610 0.52 -0.5 624,260 - MPMX19_00610 0.52 +0.3 624,260 - MPMX19_00610 0.52 -0.6 624,260 - MPMX19_00610 0.52 -0.3 624,260 - MPMX19_00610 0.52 +0.6 624,260 - MPMX19_00610 0.52 +0.6 624,260 - MPMX19_00610 0.52 -1.4 624,260 - MPMX19_00610 0.52 +0.2 624,260 - MPMX19_00610 0.52 +1.8 624,260 - MPMX19_00610 0.52 -1.3 624,260 - MPMX19_00610 0.52 -0.9 624,260 - MPMX19_00610 0.52 -2.5 624,260 - MPMX19_00610 0.52 -0.8 624,260 - MPMX19_00610 0.52 -0.4 624,260 - MPMX19_00610 0.52 -1.4 624,260 - MPMX19_00610 0.52 -0.9 624,261 + MPMX19_00610 0.52 -0.9 624,261 + MPMX19_00610 0.52 +0.2 624,261 + MPMX19_00610 0.52 -1.4 624,261 + MPMX19_00610 0.52 -1.2 624,261 + MPMX19_00610 0.52 +1.5 624,261 + MPMX19_00610 0.52 -1.6 624,261 + MPMX19_00610 0.52 +2.2 624,261 + MPMX19_00610 0.52 +0.8 624,261 + MPMX19_00610 0.52 -1.9 624,261 + MPMX19_00610 0.52 -0.2 624,262 - MPMX19_00610 0.52 -2.9 624,262 - MPMX19_00610 0.52 -1.4 624,262 - MPMX19_00610 0.52 -0.8 624,262 - MPMX19_00610 0.52 -1.7 624,262 - MPMX19_00610 0.52 -0.3 624,262 - MPMX19_00610 0.52 -1.2 624,262 - MPMX19_00610 0.52 -1.5 624,262 - MPMX19_00610 0.52 -0.2 624,275 + MPMX19_00610 0.53 -0.3 624,275 + MPMX19_00610 0.53 -0.5 624,276 - MPMX19_00610 0.53 +1.4 624,511 + MPMX19_00610 0.70 +1.6 624,511 + MPMX19_00610 0.70 -0.9 624,511 + MPMX19_00610 0.70 -0.8 624,511 + MPMX19_00610 0.70 +1.6 624,511 + MPMX19_00610 0.70 +0.3 624,511 + MPMX19_00610 0.70 +0.1 624,511 + MPMX19_00610 0.70 +0.1 624,511 + MPMX19_00610 0.70 -1.3 624,511 + MPMX19_00610 0.70 -1.2 624,511 + MPMX19_00610 0.70 +0.3 624,511 + MPMX19_00610 0.70 -0.4 624,512 - MPMX19_00610 0.70 -0.0 624,512 - MPMX19_00610 0.70 -1.0 624,512 - MPMX19_00610 0.70 -2.8 624,512 - MPMX19_00610 0.70 +0.3 624,512 - MPMX19_00610 0.70 -0.2 624,604 + MPMX19_00610 0.76 +0.8 624,604 + MPMX19_00610 0.76 -0.8 624,604 + MPMX19_00610 0.76 -1.2 624,604 + MPMX19_00610 0.76 -1.3 624,605 - MPMX19_00610 0.76 +0.4 624,605 - MPMX19_00610 0.76 +1.0 624,605 - MPMX19_00610 0.76 -1.1 624,605 - MPMX19_00610 0.76 -1.1 624,916 + +1.1 624,916 + -0.4 624,917 - -1.4 625,284 + MPMX19_00611 0.36 +1.0 625,284 + MPMX19_00611 0.36 -1.7 625,284 + MPMX19_00611 0.36 -0.9 625,284 + MPMX19_00611 0.36 -0.5 625,284 + MPMX19_00611 0.36 +0.1 625,284 + MPMX19_00611 0.36 +0.6 625,284 + MPMX19_00611 0.36 +0.9 625,285 - MPMX19_00611 0.36 -0.4 625,285 - MPMX19_00611 0.36 +0.7 625,285 - MPMX19_00611 0.36 +0.3 625,285 - MPMX19_00611 0.36 +0.3 625,285 - MPMX19_00611 0.36 -0.1 625,599 + MPMX19_00611 0.73 -0.0 625,599 + MPMX19_00611 0.73 +1.1 625,599 + MPMX19_00611 0.73 -0.4 625,599 + MPMX19_00611 0.73 -0.8 625,600 - MPMX19_00611 0.73 -0.9 625,600 - MPMX19_00611 0.73 +0.1 625,600 - MPMX19_00611 0.73 +0.1 625,654 - MPMX19_00611 0.79 -0.4 625,654 - MPMX19_00611 0.79 -0.1 625,800 + -0.4 625,800 + -1.4 625,800 + +0.1 625,800 + -0.7 625,800 + -0.4 625,800 + +0.4 625,800 + +0.4 625,800 + +0.4 625,800 + +0.4 625,800 + +1.9 625,800 + -1.5 625,800 + +0.6 625,800 + +0.5 625,800 + -0.5 625,800 + -0.0 625,800 + -1.5 625,800 + -0.1 625,800 + -2.1 625,800 + +0.3 625,800 + -0.6 625,800 + -0.7 625,800 + -1.2 625,800 + -2.4 625,801 - -0.5 625,801 - +0.7 625,801 - -0.7 625,801 - -1.8 625,801 - +0.6 625,801 - -1.2 625,801 - -0.5 625,801 - -2.9 625,801 - +0.1 625,801 - -1.1 625,801 - -1.2 625,801 - +1.3 625,801 - +0.3 625,801 - +0.1 625,801 - -1.3 625,801 - -0.4 625,801 - +0.3 625,801 - -0.2 625,801 - +0.1 625,801 - +0.5 625,801 - -0.7 625,801 - -0.7 625,801 - +1.4 625,801 - -1.4 625,801 - +0.2 625,801 - -1.9 625,801 - -1.4 625,879 + -1.2
Or see this region's nucleotide sequence