Strain Fitness in Pseudomonas sp. DMC3 around GFF735

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF733 and GFF734 are separated by 209 nucleotidesGFF734 and GFF735 are separated by 89 nucleotidesGFF735 and GFF736 overlap by 32 nucleotidesGFF736 and GFF737 are separated by 90 nucleotides GFF733 - hypothetical protein, at 50,868 to 51,659 GFF733 GFF734 - Isonitrile hydratase, at 51,869 to 52,555 GFF734 GFF735 - HTH-type transcriptional regulator CdhR, at 52,645 to 53,628 GFF735 GFF736 - Epoxide hydrolase A, at 53,597 to 54,484 GFF736 GFF737 - hypothetical protein, at 54,575 to 55,207 GFF737 Position (kb) 52 53 54Strain fitness (log2 ratio) -3 -2 -1 0 1at 51.904 kb on + strandat 51.905 kb on - strandat 52.015 kb on - strand, within GFF734at 52.186 kb on - strand, within GFF734at 52.186 kb on - strand, within GFF734at 52.269 kb on + strand, within GFF734at 52.394 kb on - strand, within GFF734at 52.457 kb on + strand, within GFF734at 52.457 kb on + strand, within GFF734at 52.457 kb on + strand, within GFF734at 52.458 kb on - strand, within GFF734at 52.458 kb on - strand, within GFF734at 52.484 kb on + strand, within GFF734at 52.484 kb on + strand, within GFF734at 52.491 kb on + strandat 52.491 kb on + strandat 52.492 kb on - strandat 52.594 kb on + strandat 52.594 kb on + strandat 52.595 kb on - strandat 52.595 kb on - strandat 52.603 kb on - strandat 52.603 kb on - strandat 52.603 kb on - strandat 52.650 kb on + strandat 52.680 kb on + strandat 52.680 kb on + strandat 52.765 kb on + strand, within GFF735at 53.692 kb on - strand, within GFF736at 53.692 kb on - strand, within GFF736at 53.999 kb on - strand, within GFF736at 53.999 kb on - strand, within GFF736at 53.999 kb on - strand, within GFF736at 53.999 kb on - strand, within GFF736at 54.030 kb on + strand, within GFF736at 54.031 kb on - strand, within GFF736at 54.033 kb on + strand, within GFF736at 54.033 kb on + strand, within GFF736at 54.034 kb on - strand, within GFF736at 54.034 kb on - strand, within GFF736at 54.040 kb on - strand, within GFF736at 54.106 kb on - strand, within GFF736at 54.160 kb on + strand, within GFF736at 54.160 kb on + strand, within GFF736at 54.160 kb on + strand, within GFF736at 54.161 kb on - strand, within GFF736at 54.161 kb on - strand, within GFF736at 54.186 kb on + strand, within GFF736at 54.306 kb on + strand, within GFF736at 54.318 kb on + strand, within GFF736at 54.318 kb on + strand, within GFF736at 54.444 kb on + strandat 54.532 kb on - strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.572 kb on + strandat 54.573 kb on - strandat 54.573 kb on - strandat 54.573 kb on - strandat 54.573 kb on - strandat 54.573 kb on - strandat 54.598 kb on + strandat 54.598 kb on + strandat 54.598 kb on + strandat 54.598 kb on + strandat 54.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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51,904 + -0.2
51,905 - -0.2
52,015 - GFF734 0.21 -0.3
52,186 - GFF734 0.46 +1.3
52,186 - GFF734 0.46 -0.7
52,269 + GFF734 0.58 -0.7
52,394 - GFF734 0.76 +1.0
52,457 + GFF734 0.86 -0.1
52,457 + GFF734 0.86 +0.9
52,457 + GFF734 0.86 +0.4
52,458 - GFF734 0.86 -0.7
52,458 - GFF734 0.86 -0.0
52,484 + GFF734 0.90 +0.0
52,484 + GFF734 0.90 -0.9
52,491 + -0.7
52,491 + +0.9
52,492 - +0.9
52,594 + -0.4
52,594 + +0.2
52,595 - -0.2
52,595 - +0.2
52,603 - +1.7
52,603 - -1.2
52,603 - -1.2
52,650 + +1.0
52,680 + -0.0
52,680 + -0.6
52,765 + GFF735 0.12 -0.4
53,692 - GFF736 0.11 +0.4
53,692 - GFF736 0.11 -0.3
53,999 - GFF736 0.45 -0.5
53,999 - GFF736 0.45 -0.9
53,999 - GFF736 0.45 +1.1
53,999 - GFF736 0.45 +0.1
54,030 + GFF736 0.49 +0.3
54,031 - GFF736 0.49 -2.1
54,033 + GFF736 0.49 -0.3
54,033 + GFF736 0.49 -0.4
54,034 - GFF736 0.49 +0.4
54,034 - GFF736 0.49 +0.4
54,040 - GFF736 0.50 +0.7
54,106 - GFF736 0.57 -0.1
54,160 + GFF736 0.63 -1.1
54,160 + GFF736 0.63 +0.4
54,160 + GFF736 0.63 -0.1
54,161 - GFF736 0.64 -0.6
54,161 - GFF736 0.64 +1.3
54,186 + GFF736 0.66 -0.1
54,306 + GFF736 0.80 +1.0
54,318 + GFF736 0.81 -0.2
54,318 + GFF736 0.81 -0.8
54,444 + +0.1
54,532 - -0.1
54,572 + +0.5
54,572 + -0.6
54,572 + +0.0
54,572 + -0.2
54,572 + +0.7
54,572 + -0.5
54,572 + -0.7
54,572 + -0.7
54,572 + -2.8
54,573 - +0.9
54,573 - -0.2
54,573 - -0.0
54,573 - -1.4
54,573 - +0.0
54,598 + -0.7
54,598 + -0.5
54,598 + +0.1
54,598 + +0.3
54,599 - -1.3

Or see this region's nucleotide sequence