Strain Fitness in Pseudomonas sp. DMC3 around GFF596

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF594 and GFF595 are separated by 56 nucleotidesGFF595 and GFF596 are separated by 259 nucleotidesGFF596 and GFF597 overlap by 23 nucleotidesGFF597 and GFF598 are separated by 55 nucleotides GFF594 - hypothetical protein, at 661,560 to 662,657 GFF594 GFF595 - Threonylcarbamoyl-AMP synthase, at 662,714 to 663,271 GFF595 GFF596 - hypothetical protein, at 663,531 to 664,199 GFF596 GFF597 - hypothetical protein, at 664,177 to 664,323 GFF597 GFF598 - Quinone oxidoreductase 1, at 664,379 to 665,356 GFF598 Position (kb) 663 664 665Strain fitness (log2 ratio) -2 -1 0 1 2at 662.656 kb on - strandat 663.340 kb on - strandat 663.414 kb on - strandat 663.414 kb on - strandat 663.420 kb on - strandat 663.537 kb on - strandat 663.561 kb on + strandat 663.606 kb on + strand, within GFF596at 663.607 kb on - strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.693 kb on + strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.694 kb on - strand, within GFF596at 663.769 kb on - strand, within GFF596at 663.769 kb on - strand, within GFF596at 663.769 kb on - strand, within GFF596at 663.785 kb on + strand, within GFF596at 663.785 kb on + strand, within GFF596at 663.786 kb on - strand, within GFF596at 663.786 kb on - strand, within GFF596at 663.786 kb on - strand, within GFF596at 664.020 kb on + strand, within GFF596at 664.020 kb on + strand, within GFF596at 664.020 kb on + strand, within GFF596at 664.020 kb on + strand, within GFF596at 664.021 kb on - strand, within GFF596at 664.021 kb on - strand, within GFF596at 664.064 kb on + strand, within GFF596at 664.090 kb on - strand, within GFF596at 664.194 kb on + strandat 664.238 kb on + strand, within GFF597at 664.239 kb on - strand, within GFF597at 664.239 kb on - strand, within GFF597at 664.239 kb on - strand, within GFF597at 664.240 kb on + strand, within GFF597at 664.312 kb on + strandat 664.313 kb on - strandat 664.321 kb on + strandat 664.321 kb on + strandat 664.322 kb on - strandat 664.332 kb on + strandat 664.380 kb on + strandat 664.380 kb on + strandat 664.380 kb on + strandat 664.551 kb on + strand, within GFF598at 664.552 kb on - strand, within GFF598at 664.564 kb on + strand, within GFF598at 664.565 kb on - strand, within GFF598at 664.565 kb on - strand, within GFF598at 664.578 kb on + strand, within GFF598at 664.578 kb on + strand, within GFF598at 664.579 kb on - strand, within GFF598at 664.579 kb on - strand, within GFF598at 664.579 kb on - strand, within GFF598at 664.579 kb on - strand, within GFF598at 664.716 kb on + strand, within GFF598at 664.716 kb on + strand, within GFF598at 664.716 kb on + strand, within GFF598at 664.716 kb on + strand, within GFF598at 664.717 kb on - strand, within GFF598at 664.717 kb on - strand, within GFF598at 664.717 kb on - strand, within GFF598at 664.717 kb on - strand, within GFF598at 664.717 kb on - strand, within GFF598at 664.717 kb on - strand, within GFF598at 664.717 kb on - strand, within GFF598at 664.717 kb on - strand, within GFF598at 664.717 kb on - strand, within GFF598at 664.721 kb on + strand, within GFF598at 664.782 kb on + strand, within GFF598at 664.783 kb on - strand, within GFF598at 664.950 kb on + strand, within GFF598at 664.950 kb on + strand, within GFF598at 664.951 kb on - strand, within GFF598at 664.951 kb on - strand, within GFF598at 664.951 kb on - strand, within GFF598at 664.968 kb on + strand, within GFF598at 664.968 kb on + strand, within GFF598at 664.968 kb on + strand, within GFF598at 664.969 kb on - strand, within GFF598at 664.969 kb on - strand, within GFF598at 664.969 kb on - strand, within GFF598at 664.969 kb on - strand, within GFF598at 665.074 kb on - strand, within GFF598at 665.098 kb on - strand, within GFF598at 665.098 kb on - strand, within GFF598

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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662,656 - -0.0
663,340 - +2.3
663,414 - -1.9
663,414 - +0.0
663,420 - -0.1
663,537 - -0.6
663,561 + -1.8
663,606 + GFF596 0.11 -0.2
663,607 - GFF596 0.11 -1.2
663,693 + GFF596 0.24 -0.9
663,693 + GFF596 0.24 +1.1
663,693 + GFF596 0.24 -0.1
663,693 + GFF596 0.24 -0.8
663,693 + GFF596 0.24 +0.5
663,693 + GFF596 0.24 +0.4
663,693 + GFF596 0.24 +0.5
663,693 + GFF596 0.24 -1.4
663,693 + GFF596 0.24 -0.5
663,693 + GFF596 0.24 -0.4
663,693 + GFF596 0.24 +0.5
663,693 + GFF596 0.24 -0.1
663,693 + GFF596 0.24 +0.0
663,693 + GFF596 0.24 -1.1
663,693 + GFF596 0.24 -0.1
663,693 + GFF596 0.24 -0.5
663,694 - GFF596 0.24 -0.7
663,694 - GFF596 0.24 -0.7
663,694 - GFF596 0.24 -0.7
663,694 - GFF596 0.24 +0.3
663,694 - GFF596 0.24 -0.3
663,694 - GFF596 0.24 +0.5
663,694 - GFF596 0.24 +0.3
663,694 - GFF596 0.24 +0.4
663,694 - GFF596 0.24 +0.3
663,694 - GFF596 0.24 -0.4
663,694 - GFF596 0.24 -0.2
663,694 - GFF596 0.24 -0.5
663,694 - GFF596 0.24 -0.2
663,694 - GFF596 0.24 +0.1
663,694 - GFF596 0.24 +1.8
663,694 - GFF596 0.24 +0.3
663,769 - GFF596 0.36 +0.6
663,769 - GFF596 0.36 -0.2
663,769 - GFF596 0.36 -0.6
663,785 + GFF596 0.38 +0.3
663,785 + GFF596 0.38 -0.9
663,786 - GFF596 0.38 -0.7
663,786 - GFF596 0.38 -1.0
663,786 - GFF596 0.38 -0.6
664,020 + GFF596 0.73 +0.7
664,020 + GFF596 0.73 -0.8
664,020 + GFF596 0.73 +0.1
664,020 + GFF596 0.73 -0.1
664,021 - GFF596 0.73 +0.0
664,021 - GFF596 0.73 -0.2
664,064 + GFF596 0.80 +0.2
664,090 - GFF596 0.84 +0.3
664,194 + -0.4
664,238 + GFF597 0.41 -0.1
664,239 - GFF597 0.42 +0.5
664,239 - GFF597 0.42 -0.5
664,239 - GFF597 0.42 +0.1
664,240 + GFF597 0.43 +0.4
664,312 + +0.1
664,313 - +0.8
664,321 + -0.9
664,321 + -0.1
664,322 - -0.3
664,332 + -0.2
664,380 + -1.8
664,380 + +0.5
664,380 + -1.4
664,551 + GFF598 0.18 -1.0
664,552 - GFF598 0.18 -0.3
664,564 + GFF598 0.19 -0.4
664,565 - GFF598 0.19 +1.9
664,565 - GFF598 0.19 -0.5
664,578 + GFF598 0.20 -0.2
664,578 + GFF598 0.20 -0.2
664,579 - GFF598 0.20 +1.3
664,579 - GFF598 0.20 -1.8
664,579 - GFF598 0.20 +0.1
664,579 - GFF598 0.20 +0.7
664,716 + GFF598 0.34 +1.3
664,716 + GFF598 0.34 +0.3
664,716 + GFF598 0.34 +0.8
664,716 + GFF598 0.34 -1.7
664,717 - GFF598 0.35 -0.2
664,717 - GFF598 0.35 -0.8
664,717 - GFF598 0.35 -0.2
664,717 - GFF598 0.35 -0.3
664,717 - GFF598 0.35 -0.8
664,717 - GFF598 0.35 +0.0
664,717 - GFF598 0.35 +0.2
664,717 - GFF598 0.35 -2.0
664,717 - GFF598 0.35 +0.5
664,721 + GFF598 0.35 -1.3
664,782 + GFF598 0.41 -0.7
664,783 - GFF598 0.41 -1.2
664,950 + GFF598 0.58 +1.5
664,950 + GFF598 0.58 -0.4
664,951 - GFF598 0.58 +0.8
664,951 - GFF598 0.58 -1.7
664,951 - GFF598 0.58 -0.3
664,968 + GFF598 0.60 +0.9
664,968 + GFF598 0.60 -0.7
664,968 + GFF598 0.60 -0.5
664,969 - GFF598 0.60 +0.1
664,969 - GFF598 0.60 -1.5
664,969 - GFF598 0.60 +0.2
664,969 - GFF598 0.60 -0.6
665,074 - GFF598 0.71 -0.1
665,098 - GFF598 0.74 +0.3
665,098 - GFF598 0.74 -1.1

Or see this region's nucleotide sequence