Strain Fitness in Pseudomonas sp. DMC3 around GFF589

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF587 and GFF588 are separated by 57 nucleotidesGFF588 and GFF589 are separated by 132 nucleotidesGFF589 and GFF590 are separated by 21 nucleotides GFF587 - Lipid A biosynthesis palmitoleoyltransferase, at 654,670 to 655,557 GFF587 GFF588 - hypothetical protein, at 655,615 to 655,929 GFF588 GFF589 - Trk system potassium uptake protein TrkA, at 656,062 to 657,438 GFF589 GFF590 - Ribosomal RNA small subunit methyltransferase B, at 657,460 to 658,770 GFF590 Position (kb) 656 657 658Strain fitness (log2 ratio) -2 -1 0 1at 655.420 kb on + strand, within GFF587at 655.420 kb on + strand, within GFF587at 655.420 kb on + strand, within GFF587at 655.420 kb on + strand, within GFF587at 655.421 kb on - strand, within GFF587at 655.421 kb on - strand, within GFF587at 655.463 kb on + strand, within GFF587at 655.464 kb on - strand, within GFF587at 655.474 kb on + strandat 655.474 kb on + strandat 655.474 kb on + strandat 655.475 kb on - strandat 655.475 kb on - strandat 655.475 kb on - strandat 655.487 kb on - strandat 655.498 kb on + strandat 655.498 kb on + strandat 655.498 kb on + strandat 655.498 kb on + strandat 655.498 kb on + strandat 655.498 kb on + strandat 655.498 kb on + strandat 655.498 kb on + strandat 655.498 kb on + strandat 655.498 kb on + strandat 655.499 kb on - strandat 655.499 kb on - strandat 655.499 kb on - strandat 655.499 kb on - strandat 655.499 kb on - strandat 655.499 kb on - strandat 655.499 kb on - strandat 655.499 kb on - strandat 655.499 kb on - strandat 655.499 kb on - strandat 655.499 kb on - strandat 655.784 kb on + strand, within GFF588at 655.785 kb on - strand, within GFF588at 655.785 kb on - strand, within GFF588at 655.853 kb on + strand, within GFF588at 655.854 kb on - strand, within GFF588at 655.854 kb on - strand, within GFF588at 656.109 kb on + strandat 656.109 kb on + strandat 656.109 kb on + strandat 656.405 kb on + strand, within GFF589at 656.435 kb on + strand, within GFF589at 656.435 kb on + strand, within GFF589at 656.436 kb on - strand, within GFF589at 656.541 kb on + strand, within GFF589at 656.605 kb on + strand, within GFF589at 656.744 kb on + strand, within GFF589at 656.744 kb on + strand, within GFF589at 656.744 kb on + strand, within GFF589at 656.745 kb on - strand, within GFF589at 656.745 kb on - strand, within GFF589at 656.957 kb on + strand, within GFF589at 656.957 kb on + strand, within GFF589at 656.957 kb on + strand, within GFF589at 656.958 kb on - strand, within GFF589at 657.044 kb on + strand, within GFF589at 657.044 kb on + strand, within GFF589at 657.044 kb on + strand, within GFF589at 657.045 kb on - strand, within GFF589at 657.045 kb on - strand, within GFF589at 657.045 kb on - strand, within GFF589at 657.045 kb on - strand, within GFF589at 657.045 kb on - strand, within GFF589at 657.128 kb on + strand, within GFF589at 657.128 kb on + strand, within GFF589at 657.128 kb on + strand, within GFF589at 657.129 kb on - strand, within GFF589at 657.129 kb on - strand, within GFF589at 657.497 kb on + strandat 657.497 kb on + strandat 657.500 kb on + strandat 657.500 kb on + strandat 657.501 kb on - strandat 658.169 kb on + strand, within GFF590at 658.217 kb on + strand, within GFF590at 658.217 kb on + strand, within GFF590at 658.217 kb on + strand, within GFF590at 658.217 kb on + strand, within GFF590at 658.217 kb on + strand, within GFF590at 658.217 kb on + strand, within GFF590at 658.218 kb on - strand, within GFF590

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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655,420 + GFF587 0.84 -1.2
655,420 + GFF587 0.84 -0.5
655,420 + GFF587 0.84 -0.2
655,420 + GFF587 0.84 +0.1
655,421 - GFF587 0.85 +1.4
655,421 - GFF587 0.85 -1.7
655,463 + GFF587 0.89 +1.3
655,464 - GFF587 0.89 -2.2
655,474 + -1.4
655,474 + -0.7
655,474 + -0.7
655,475 - +0.9
655,475 - -1.5
655,475 - +0.3
655,487 - -0.8
655,498 + -1.0
655,498 + -0.2
655,498 + +0.7
655,498 + +0.4
655,498 + -1.1
655,498 + -0.8
655,498 + +0.8
655,498 + -0.4
655,498 + +0.2
655,498 + +0.3
655,499 - -0.2
655,499 - -1.2
655,499 - -0.4
655,499 - -1.0
655,499 - -0.4
655,499 - +0.8
655,499 - -0.9
655,499 - +1.2
655,499 - -0.8
655,499 - -1.0
655,499 - +0.1
655,784 + GFF588 0.54 +0.1
655,785 - GFF588 0.54 -2.3
655,785 - GFF588 0.54 -0.4
655,853 + GFF588 0.76 -0.5
655,854 - GFF588 0.76 +0.7
655,854 - GFF588 0.76 -1.5
656,109 + -2.3
656,109 + -1.8
656,109 + +0.4
656,405 + GFF589 0.25 -1.2
656,435 + GFF589 0.27 +0.8
656,435 + GFF589 0.27 +0.7
656,436 - GFF589 0.27 +1.3
656,541 + GFF589 0.35 +0.3
656,605 + GFF589 0.39 +0.9
656,744 + GFF589 0.50 +0.5
656,744 + GFF589 0.50 -0.6
656,744 + GFF589 0.50 -0.2
656,745 - GFF589 0.50 +0.2
656,745 - GFF589 0.50 -0.6
656,957 + GFF589 0.65 +0.7
656,957 + GFF589 0.65 -0.7
656,957 + GFF589 0.65 -0.3
656,958 - GFF589 0.65 -0.8
657,044 + GFF589 0.71 -1.9
657,044 + GFF589 0.71 -0.1
657,044 + GFF589 0.71 +0.3
657,045 - GFF589 0.71 -0.4
657,045 - GFF589 0.71 +0.1
657,045 - GFF589 0.71 +0.3
657,045 - GFF589 0.71 +0.2
657,045 - GFF589 0.71 +0.3
657,128 + GFF589 0.77 -0.7
657,128 + GFF589 0.77 +0.3
657,128 + GFF589 0.77 +1.1
657,129 - GFF589 0.77 +0.3
657,129 - GFF589 0.77 -0.1
657,497 + +0.5
657,497 + -0.9
657,500 + +0.0
657,500 + +0.3
657,501 - -0.7
658,169 + GFF590 0.54 -0.1
658,217 + GFF590 0.58 -0.1
658,217 + GFF590 0.58 -0.1
658,217 + GFF590 0.58 -0.3
658,217 + GFF590 0.58 -0.1
658,217 + GFF590 0.58 +0.3
658,217 + GFF590 0.58 +0.2
658,218 - GFF590 0.58 -0.1

Or see this region's nucleotide sequence