Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3202 and GFF3203 are separated by 105 nucleotides GFF3203 and GFF3204 overlap by 1 nucleotides GFF3204 and GFF3205 are separated by 2 nucleotides
GFF3202 - Motility protein B, at 170,330 to 171,370
GFF3202
GFF3203 - hypothetical protein, at 171,476 to 171,961
GFF3203
GFF3204 - hypothetical protein, at 171,961 to 172,920
GFF3204
GFF3205 - hypothetical protein, at 172,923 to 173,024
GFF3205
Position (kb) 171
172 Strain fitness (log2 ratio) -2
-1
0
1 at 170.505 kb on - strand, within GFF3202 at 170.546 kb on + strand, within GFF3202 at 170.547 kb on - strand, within GFF3202 at 170.547 kb on - strand, within GFF3202 at 170.858 kb on + strand, within GFF3202 at 170.859 kb on - strand, within GFF3202 at 170.859 kb on - strand, within GFF3202 at 170.949 kb on - strand, within GFF3202 at 171.065 kb on + strand, within GFF3202 at 171.368 kb on + strand at 171.368 kb on + strand at 171.368 kb on + strand at 171.443 kb on + strand at 171.447 kb on - strand at 171.537 kb on + strand, within GFF3203 at 171.537 kb on + strand, within GFF3203 at 171.537 kb on + strand, within GFF3203 at 171.538 kb on - strand, within GFF3203 at 171.538 kb on - strand, within GFF3203 at 171.606 kb on + strand, within GFF3203 at 171.666 kb on + strand, within GFF3203 at 171.666 kb on + strand, within GFF3203 at 171.666 kb on + strand, within GFF3203 at 171.666 kb on + strand, within GFF3203 at 171.667 kb on - strand, within GFF3203 at 171.667 kb on - strand, within GFF3203 at 171.667 kb on - strand, within GFF3203 at 171.700 kb on + strand, within GFF3203 at 171.700 kb on + strand, within GFF3203 at 171.700 kb on + strand, within GFF3203 at 171.701 kb on - strand, within GFF3203 at 171.701 kb on - strand, within GFF3203 at 171.817 kb on + strand, within GFF3203 at 171.863 kb on + strand, within GFF3203 at 171.863 kb on + strand, within GFF3203 at 171.864 kb on - strand, within GFF3203 at 171.873 kb on + strand, within GFF3203 at 171.949 kb on + strand at 171.995 kb on + strand at 171.995 kb on + strand at 171.995 kb on + strand at 171.996 kb on - strand at 172.043 kb on + strand at 172.043 kb on + strand at 172.046 kb on + strand at 172.046 kb on + strand at 172.046 kb on + strand at 172.046 kb on + strand at 172.046 kb on + strand at 172.047 kb on - strand at 172.047 kb on - strand at 172.047 kb on - strand at 172.047 kb on - strand at 172.047 kb on - strand at 172.154 kb on + strand, within GFF3204 at 172.154 kb on + strand, within GFF3204 at 172.155 kb on - strand, within GFF3204 at 172.328 kb on + strand, within GFF3204 at 172.329 kb on - strand, within GFF3204 at 172.329 kb on - strand, within GFF3204 at 172.359 kb on + strand, within GFF3204 at 172.359 kb on + strand, within GFF3204 at 172.763 kb on + strand, within GFF3204 at 172.784 kb on - strand, within GFF3204 at 172.879 kb on - strand at 172.886 kb on + strand at 172.887 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 170,505 - GFF3202 0.17 -1.8 170,546 + GFF3202 0.21 +0.0 170,547 - GFF3202 0.21 -1.8 170,547 - GFF3202 0.21 -0.6 170,858 + GFF3202 0.51 +0.2 170,859 - GFF3202 0.51 -0.0 170,859 - GFF3202 0.51 +0.2 170,949 - GFF3202 0.59 -0.1 171,065 + GFF3202 0.71 +0.8 171,368 + -0.0 171,368 + +0.8 171,368 + +0.2 171,443 + -0.9 171,447 - -0.8 171,537 + GFF3203 0.13 -0.5 171,537 + GFF3203 0.13 +0.0 171,537 + GFF3203 0.13 -0.6 171,538 - GFF3203 0.13 -0.4 171,538 - GFF3203 0.13 -1.3 171,606 + GFF3203 0.27 -1.1 171,666 + GFF3203 0.39 +0.2 171,666 + GFF3203 0.39 +0.2 171,666 + GFF3203 0.39 -0.6 171,666 + GFF3203 0.39 +1.0 171,667 - GFF3203 0.39 +0.3 171,667 - GFF3203 0.39 -0.8 171,667 - GFF3203 0.39 +0.2 171,700 + GFF3203 0.46 -0.2 171,700 + GFF3203 0.46 +0.3 171,700 + GFF3203 0.46 -0.2 171,701 - GFF3203 0.46 -0.5 171,701 - GFF3203 0.46 +0.6 171,817 + GFF3203 0.70 -0.2 171,863 + GFF3203 0.80 -0.2 171,863 + GFF3203 0.80 +0.3 171,864 - GFF3203 0.80 -0.1 171,873 + GFF3203 0.82 -0.1 171,949 + +0.1 171,995 + -0.9 171,995 + +0.2 171,995 + -0.3 171,996 - +0.0 172,043 + +0.1 172,043 + +0.6 172,046 + +0.5 172,046 + +0.1 172,046 + -0.6 172,046 + -0.2 172,046 + +1.4 172,047 - +0.5 172,047 - -0.2 172,047 - -0.6 172,047 - -0.3 172,047 - +0.7 172,154 + GFF3204 0.20 -0.2 172,154 + GFF3204 0.20 -0.3 172,155 - GFF3204 0.20 -0.5 172,328 + GFF3204 0.38 +0.2 172,329 - GFF3204 0.38 -0.9 172,329 - GFF3204 0.38 -1.0 172,359 + GFF3204 0.41 -0.3 172,359 + GFF3204 0.41 -1.0 172,763 + GFF3204 0.84 +0.1 172,784 - GFF3204 0.86 -2.5 172,879 - +0.5 172,886 + -0.1 172,887 - -0.3
Or see this region's nucleotide sequence