Strain Fitness in Pseudomonas sp. DMC3 around GFF3200

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3198 and GFF3199 overlap by 1 nucleotidesGFF3199 and GFF3200 are separated by 42 nucleotidesGFF3200 and GFF3201 are separated by 166 nucleotides GFF3198 - Phosphatidylserine decarboxylase proenzyme, at 166,034 to 166,894 GFF3198 GFF3199 - Thiosulfate sulfurtransferase, at 166,894 to 167,727 GFF3199 GFF3200 - hypothetical protein, at 167,770 to 169,308 GFF3200 GFF3201 - Motility protein A, at 169,475 to 170,326 GFF3201 Position (kb) 167 168 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1at 166.930 kb on - strandat 166.930 kb on - strandat 167.009 kb on + strand, within GFF3199at 167.009 kb on + strand, within GFF3199at 167.010 kb on - strand, within GFF3199at 167.010 kb on - strand, within GFF3199at 167.207 kb on + strand, within GFF3199at 167.271 kb on - strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.389 kb on + strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.390 kb on - strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.391 kb on + strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.392 kb on - strand, within GFF3199at 167.393 kb on + strand, within GFF3199at 167.393 kb on + strand, within GFF3199at 167.393 kb on + strand, within GFF3199at 167.393 kb on + strand, within GFF3199at 167.393 kb on + strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.394 kb on - strand, within GFF3199at 167.399 kb on + strand, within GFF3199at 167.399 kb on + strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.400 kb on - strand, within GFF3199at 167.469 kb on - strand, within GFF3199at 167.469 kb on - strand, within GFF3199at 167.469 kb on - strand, within GFF3199at 167.469 kb on - strand, within GFF3199at 167.477 kb on + strand, within GFF3199at 167.477 kb on + strand, within GFF3199at 167.478 kb on - strand, within GFF3199at 167.478 kb on - strand, within GFF3199at 167.761 kb on - strandat 167.787 kb on + strandat 167.788 kb on - strandat 167.839 kb on + strandat 167.840 kb on - strandat 167.840 kb on - strandat 167.840 kb on - strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.881 kb on + strandat 167.882 kb on - strandat 167.882 kb on - strandat 167.968 kb on + strand, within GFF3200at 167.969 kb on - strand, within GFF3200at 167.969 kb on - strand, within GFF3200at 168.444 kb on - strand, within GFF3200at 168.444 kb on - strand, within GFF3200at 168.458 kb on + strand, within GFF3200at 168.458 kb on + strand, within GFF3200at 168.458 kb on + strand, within GFF3200at 168.562 kb on + strand, within GFF3200at 168.671 kb on + strand, within GFF3200at 168.671 kb on + strand, within GFF3200at 168.824 kb on + strand, within GFF3200at 168.824 kb on + strand, within GFF3200at 169.354 kb on + strandat 169.380 kb on + strandat 169.380 kb on + strandat 169.381 kb on - strandat 169.381 kb on - strandat 169.381 kb on - strandat 169.382 kb on + strandat 169.382 kb on + strandat 169.382 kb on + strandat 169.383 kb on - strandat 169.408 kb on + strandat 169.408 kb on + strandat 169.409 kb on - strandat 169.409 kb on - strandat 169.436 kb on + strandat 169.437 kb on - strandat 169.455 kb on + strandat 169.455 kb on + strandat 169.456 kb on - strandat 169.463 kb on + strandat 169.463 kb on + strandat 169.464 kb on - strandat 169.464 kb on - strandat 169.464 kb on - strandat 169.464 kb on - strandat 169.464 kb on - strandat 169.464 kb on - strandat 169.464 kb on - strandat 169.464 kb on - strandat 169.470 kb on + strandat 169.470 kb on + strandat 169.470 kb on + strandat 169.470 kb on + strandat 169.471 kb on - strandat 169.471 kb on - strandat 169.471 kb on - strandat 169.471 kb on - strandat 169.471 kb on - strandat 169.471 kb on - strandat 169.474 kb on + strandat 169.474 kb on + strandat 169.475 kb on - strandat 169.475 kb on - strandat 169.475 kb on - strandat 169.475 kb on - strandat 169.504 kb on - strandat 169.527 kb on - strandat 169.628 kb on + strand, within GFF3201at 169.628 kb on + strand, within GFF3201at 169.628 kb on + strand, within GFF3201at 169.695 kb on - strand, within GFF3201at 169.809 kb on - strand, within GFF3201at 169.856 kb on + strand, within GFF3201at 169.856 kb on + strand, within GFF3201at 169.856 kb on + strand, within GFF3201at 169.856 kb on + strand, within GFF3201at 169.925 kb on + strand, within GFF3201at 169.925 kb on + strand, within GFF3201at 169.926 kb on - strand, within GFF3201at 170.099 kb on - strand, within GFF3201at 170.123 kb on + strand, within GFF3201at 170.186 kb on + strand, within GFF3201at 170.187 kb on - strand, within GFF3201at 170.187 kb on - strand, within GFF3201

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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166,930 - -1.5
166,930 - -1.6
167,009 + GFF3199 0.14 -0.7
167,009 + GFF3199 0.14 -1.5
167,010 - GFF3199 0.14 +0.3
167,010 - GFF3199 0.14 -1.9
167,207 + GFF3199 0.38 -0.2
167,271 - GFF3199 0.45 -0.2
167,389 + GFF3199 0.59 -0.8
167,389 + GFF3199 0.59 -0.2
167,389 + GFF3199 0.59 -0.8
167,389 + GFF3199 0.59 -1.1
167,389 + GFF3199 0.59 +0.7
167,389 + GFF3199 0.59 +0.8
167,389 + GFF3199 0.59 -2.2
167,389 + GFF3199 0.59 +0.4
167,390 - GFF3199 0.59 +0.1
167,390 - GFF3199 0.59 -0.4
167,390 - GFF3199 0.59 +0.3
167,390 - GFF3199 0.59 +0.8
167,390 - GFF3199 0.59 -0.3
167,390 - GFF3199 0.59 -0.1
167,390 - GFF3199 0.59 -0.3
167,390 - GFF3199 0.59 -0.6
167,390 - GFF3199 0.59 -0.1
167,390 - GFF3199 0.59 -0.2
167,391 + GFF3199 0.60 -0.2
167,391 + GFF3199 0.60 -0.2
167,391 + GFF3199 0.60 -1.0
167,391 + GFF3199 0.60 -1.2
167,391 + GFF3199 0.60 -0.5
167,391 + GFF3199 0.60 -1.3
167,391 + GFF3199 0.60 +0.5
167,392 - GFF3199 0.60 +1.0
167,392 - GFF3199 0.60 -0.6
167,392 - GFF3199 0.60 +0.4
167,392 - GFF3199 0.60 -0.3
167,392 - GFF3199 0.60 -0.3
167,392 - GFF3199 0.60 -0.3
167,392 - GFF3199 0.60 -0.8
167,392 - GFF3199 0.60 -0.3
167,392 - GFF3199 0.60 -0.1
167,393 + GFF3199 0.60 -1.0
167,393 + GFF3199 0.60 +0.8
167,393 + GFF3199 0.60 -0.2
167,393 + GFF3199 0.60 -1.0
167,393 + GFF3199 0.60 -0.2
167,394 - GFF3199 0.60 -0.6
167,394 - GFF3199 0.60 +0.8
167,394 - GFF3199 0.60 -2.0
167,394 - GFF3199 0.60 +0.1
167,394 - GFF3199 0.60 -0.6
167,394 - GFF3199 0.60 -0.2
167,394 - GFF3199 0.60 -0.8
167,394 - GFF3199 0.60 +0.2
167,394 - GFF3199 0.60 +0.0
167,399 + GFF3199 0.61 -0.8
167,399 + GFF3199 0.61 -1.0
167,400 - GFF3199 0.61 +0.6
167,400 - GFF3199 0.61 -0.2
167,400 - GFF3199 0.61 +0.3
167,400 - GFF3199 0.61 -0.3
167,400 - GFF3199 0.61 -0.1
167,400 - GFF3199 0.61 +0.1
167,400 - GFF3199 0.61 -0.5
167,400 - GFF3199 0.61 -1.1
167,469 - GFF3199 0.69 +0.1
167,469 - GFF3199 0.69 +0.2
167,469 - GFF3199 0.69 -0.5
167,469 - GFF3199 0.69 +0.6
167,477 + GFF3199 0.70 -0.2
167,477 + GFF3199 0.70 -0.2
167,478 - GFF3199 0.70 -0.5
167,478 - GFF3199 0.70 +0.9
167,761 - -0.5
167,787 + -0.6
167,788 - +0.8
167,839 + -0.8
167,840 - -1.1
167,840 - +0.7
167,840 - -0.0
167,881 + +0.3
167,881 + +0.6
167,881 + -1.1
167,881 + -1.0
167,881 + -0.6
167,881 + +1.6
167,881 + -1.1
167,881 + +0.1
167,882 - -0.3
167,882 - +0.2
167,968 + GFF3200 0.13 -0.2
167,969 - GFF3200 0.13 +1.0
167,969 - GFF3200 0.13 +0.1
168,444 - GFF3200 0.44 -0.4
168,444 - GFF3200 0.44 -0.1
168,458 + GFF3200 0.45 +0.7
168,458 + GFF3200 0.45 +0.2
168,458 + GFF3200 0.45 -0.5
168,562 + GFF3200 0.51 +1.0
168,671 + GFF3200 0.59 +0.6
168,671 + GFF3200 0.59 -0.8
168,824 + GFF3200 0.68 -0.3
168,824 + GFF3200 0.68 +0.0
169,354 + -0.2
169,380 + +0.1
169,380 + -0.0
169,381 - -0.0
169,381 - +0.3
169,381 - +0.7
169,382 + +0.1
169,382 + -0.1
169,382 + -0.2
169,383 - -0.1
169,408 + -0.0
169,408 + -0.2
169,409 - +0.4
169,409 - -0.2
169,436 + -1.8
169,437 - +0.4
169,455 + +1.2
169,455 + -0.3
169,456 - -2.0
169,463 + +0.8
169,463 + -0.3
169,464 - +0.3
169,464 - -0.8
169,464 - -0.6
169,464 - -0.4
169,464 - +0.0
169,464 - -0.1
169,464 - -0.4
169,464 - -1.4
169,470 + -0.9
169,470 + -0.6
169,470 + +0.5
169,470 + +0.1
169,471 - -0.3
169,471 - +0.2
169,471 - -1.8
169,471 - +0.5
169,471 - -0.7
169,471 - -0.2
169,474 + -0.1
169,474 + -0.5
169,475 - -0.2
169,475 - -0.1
169,475 - -0.1
169,475 - -0.0
169,504 - -0.1
169,527 - -1.5
169,628 + GFF3201 0.18 -0.0
169,628 + GFF3201 0.18 +0.2
169,628 + GFF3201 0.18 +0.1
169,695 - GFF3201 0.26 +0.3
169,809 - GFF3201 0.39 -1.4
169,856 + GFF3201 0.45 -0.1
169,856 + GFF3201 0.45 -1.5
169,856 + GFF3201 0.45 +1.2
169,856 + GFF3201 0.45 +0.3
169,925 + GFF3201 0.53 -0.0
169,925 + GFF3201 0.53 -0.5
169,926 - GFF3201 0.53 -0.3
170,099 - GFF3201 0.73 -1.7
170,123 + GFF3201 0.76 -0.9
170,186 + GFF3201 0.83 -0.1
170,187 - GFF3201 0.84 -3.0
170,187 - GFF3201 0.84 -0.5

Or see this region's nucleotide sequence