Strain Fitness in Pseudomonas sp. DMC3 around GFF3061

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3061 and GFF3062 are separated by 10 nucleotides GFF3061 - Imidazolonepropionase, at 93 to 1,298 GFF3061 GFF3062 - hypothetical protein, at 1,309 to 2,112 GFF3062 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1at 0.077 kb on + strandat 0.077 kb on + strandat 0.077 kb on + strandat 0.077 kb on + strandat 0.077 kb on + strandat 0.077 kb on + strandat 0.079 kb on + strandat 0.080 kb on - strandat 0.080 kb on - strandat 0.080 kb on - strandat 0.080 kb on - strandat 0.080 kb on - strandat 0.080 kb on - strandat 0.144 kb on + strandat 0.145 kb on - strandat 0.354 kb on + strand, within GFF3061at 0.354 kb on + strand, within GFF3061at 0.355 kb on - strand, within GFF3061at 0.355 kb on - strand, within GFF3061at 0.621 kb on + strand, within GFF3061at 0.621 kb on + strand, within GFF3061at 0.623 kb on + strand, within GFF3061at 0.624 kb on - strand, within GFF3061at 0.624 kb on - strand, within GFF3061at 0.624 kb on - strand, within GFF3061at 0.624 kb on - strand, within GFF3061at 0.642 kb on + strand, within GFF3061at 0.643 kb on - strand, within GFF3061at 0.643 kb on - strand, within GFF3061at 0.643 kb on - strand, within GFF3061at 0.723 kb on + strand, within GFF3061at 0.724 kb on - strand, within GFF3061at 0.846 kb on + strand, within GFF3061at 0.871 kb on + strand, within GFF3061at 0.948 kb on + strand, within GFF3061at 0.948 kb on + strand, within GFF3061at 0.949 kb on - strand, within GFF3061at 1.082 kb on + strand, within GFF3061at 1.083 kb on - strand, within GFF3061at 1.236 kb on + strandat 1.237 kb on - strandat 1.296 kb on + strandat 1.296 kb on + strandat 1.446 kb on + strand, within GFF3062at 1.446 kb on + strand, within GFF3062at 1.505 kb on - strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.555 kb on + strand, within GFF3062at 1.556 kb on - strand, within GFF3062at 1.556 kb on - strand, within GFF3062at 1.579 kb on + strand, within GFF3062at 1.580 kb on - strand, within GFF3062at 1.580 kb on - strand, within GFF3062at 1.603 kb on - strand, within GFF3062at 1.655 kb on - strand, within GFF3062at 1.887 kb on + strand, within GFF3062at 1.887 kb on + strand, within GFF3062at 1.887 kb on + strand, within GFF3062at 1.888 kb on - strand, within GFF3062at 1.993 kb on + strand, within GFF3062at 1.993 kb on + strand, within GFF3062at 1.993 kb on + strand, within GFF3062at 1.993 kb on + strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 1.994 kb on - strand, within GFF3062at 2.286 kb on + strandat 2.287 kb on - strandat 2.287 kb on - strandat 2.287 kb on - strandat 2.287 kb on - strandat 2.287 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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77 + +0.3
77 + +0.2
77 + -0.5
77 + +0.4
77 + -0.5
77 + -0.5
79 + -1.5
80 - -0.9
80 - -0.8
80 - +1.1
80 - -0.4
80 - +0.4
80 - -1.1
144 + +0.4
145 - -0.2
354 + GFF3061 0.22 -0.4
354 + GFF3061 0.22 +0.8
355 - GFF3061 0.22 +0.8
355 - GFF3061 0.22 +0.8
621 + GFF3061 0.44 +0.2
621 + GFF3061 0.44 -0.4
623 + GFF3061 0.44 -0.4
624 - GFF3061 0.44 -1.4
624 - GFF3061 0.44 +0.4
624 - GFF3061 0.44 -0.4
624 - GFF3061 0.44 -0.1
642 + GFF3061 0.46 +0.2
643 - GFF3061 0.46 +0.1
643 - GFF3061 0.46 +0.5
643 - GFF3061 0.46 -1.5
723 + GFF3061 0.52 -0.9
724 - GFF3061 0.52 -0.2
846 + GFF3061 0.62 -0.6
871 + GFF3061 0.65 -1.2
948 + GFF3061 0.71 -0.1
948 + GFF3061 0.71 +0.0
949 - GFF3061 0.71 -0.1
1,082 + GFF3061 0.82 -2.4
1,083 - GFF3061 0.82 +0.2
1,236 + -1.8
1,237 - -0.3
1,296 + +0.5
1,296 + -0.3
1,446 + GFF3062 0.17 -0.5
1,446 + GFF3062 0.17 -0.9
1,505 - GFF3062 0.24 -0.5
1,555 + GFF3062 0.31 +0.4
1,555 + GFF3062 0.31 -0.2
1,555 + GFF3062 0.31 -0.3
1,555 + GFF3062 0.31 -0.2
1,555 + GFF3062 0.31 -0.0
1,555 + GFF3062 0.31 +0.7
1,555 + GFF3062 0.31 +0.3
1,556 - GFF3062 0.31 -0.6
1,556 - GFF3062 0.31 -0.1
1,579 + GFF3062 0.34 -0.0
1,580 - GFF3062 0.34 -0.2
1,580 - GFF3062 0.34 -0.3
1,603 - GFF3062 0.37 -0.6
1,655 - GFF3062 0.43 +0.0
1,887 + GFF3062 0.72 -0.6
1,887 + GFF3062 0.72 +0.4
1,887 + GFF3062 0.72 -0.9
1,888 - GFF3062 0.72 -0.8
1,993 + GFF3062 0.85 +0.2
1,993 + GFF3062 0.85 +0.6
1,993 + GFF3062 0.85 -0.6
1,993 + GFF3062 0.85 +0.7
1,994 - GFF3062 0.85 -0.6
1,994 - GFF3062 0.85 -1.1
1,994 - GFF3062 0.85 -0.8
1,994 - GFF3062 0.85 -1.0
1,994 - GFF3062 0.85 +1.0
1,994 - GFF3062 0.85 -1.2
2,286 + -0.2
2,287 - -0.0
2,287 - -1.0
2,287 - -0.1
2,287 - +0.3
2,287 - -1.6

Or see this region's nucleotide sequence