Strain Fitness in Pseudomonas sp. DMC3 around GFF23

Experiment: D,L-Lactate and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF21 and GFF22 overlap by 4 nucleotidesGFF22 and GFF23 are separated by 114 nucleotidesGFF23 and GFF24 are separated by 282 nucleotides GFF21 - Phosphoglycolate phosphatase, at 20,332 to 21,150 GFF21 GFF22 - Ribulose-phosphate 3-epimerase, at 21,147 to 21,821 GFF22 GFF23 - Long-chain-alcohol dehydrogenase 1, at 21,936 to 23,084 GFF23 GFF24 - Inner membrane ABC transporter permease protein YdcV, at 23,367 to 24,191 GFF24 Position (kb) 21 22 23 24Strain fitness (log2 ratio) -2 -1 0 1at 21.841 kb on - strandat 21.841 kb on - strandat 21.862 kb on + strandat 21.862 kb on + strandat 21.862 kb on + strandat 21.862 kb on + strandat 21.862 kb on + strandat 21.862 kb on + strandat 21.862 kb on + strandat 21.862 kb on + strandat 21.863 kb on - strandat 21.863 kb on - strandat 21.863 kb on - strandat 21.863 kb on - strandat 21.863 kb on - strandat 21.863 kb on - strandat 21.863 kb on - strandat 21.863 kb on - strandat 21.863 kb on - strandat 21.863 kb on - strandat 21.863 kb on - strandat 21.863 kb on - strandat 21.864 kb on + strandat 21.865 kb on - strandat 22.002 kb on + strandat 22.231 kb on + strand, within GFF23at 22.231 kb on + strand, within GFF23at 22.232 kb on - strand, within GFF23at 22.232 kb on - strand, within GFF23at 22.232 kb on - strand, within GFF23at 22.232 kb on - strand, within GFF23at 22.232 kb on - strand, within GFF23at 22.232 kb on - strand, within GFF23at 22.232 kb on - strand, within GFF23at 22.399 kb on + strand, within GFF23at 22.483 kb on + strand, within GFF23at 22.483 kb on + strand, within GFF23at 22.484 kb on - strand, within GFF23at 22.484 kb on - strand, within GFF23at 22.591 kb on + strand, within GFF23at 22.591 kb on + strand, within GFF23at 22.592 kb on - strand, within GFF23at 23.098 kb on + strandat 23.098 kb on + strandat 23.098 kb on + strandat 23.098 kb on + strandat 23.098 kb on + strandat 23.099 kb on - strandat 23.100 kb on + strandat 23.100 kb on + strandat 23.100 kb on + strandat 23.100 kb on + strandat 23.100 kb on + strandat 23.100 kb on + strandat 23.100 kb on + strandat 23.100 kb on + strandat 23.100 kb on + strandat 23.101 kb on - strandat 23.101 kb on - strandat 23.101 kb on - strandat 23.101 kb on - strandat 23.101 kb on - strandat 23.125 kb on + strandat 23.126 kb on - strandat 23.151 kb on - strandat 23.177 kb on + strandat 23.240 kb on + strandat 23.241 kb on - strandat 23.241 kb on - strandat 23.266 kb on + strandat 23.267 kb on - strandat 23.381 kb on + strandat 23.381 kb on + strandat 23.382 kb on - strandat 23.696 kb on + strand, within GFF24at 23.696 kb on + strand, within GFF24at 23.696 kb on + strand, within GFF24at 23.697 kb on - strand, within GFF24at 23.749 kb on - strand, within GFF24at 23.783 kb on + strand, within GFF24at 23.812 kb on + strand, within GFF24at 23.812 kb on + strand, within GFF24

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
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21,841 - -1.2
21,841 - +0.4
21,862 + +0.0
21,862 + +0.0
21,862 + +0.9
21,862 + -0.7
21,862 + -0.0
21,862 + +0.1
21,862 + +0.5
21,862 + +0.5
21,863 - +0.8
21,863 - -0.0
21,863 - -0.1
21,863 - +0.3
21,863 - +0.1
21,863 - -0.4
21,863 - -0.5
21,863 - -0.2
21,863 - +0.3
21,863 - -1.3
21,863 - -1.9
21,863 - +0.4
21,864 + -0.0
21,865 - +0.6
22,002 + +0.2
22,231 + GFF23 0.26 +0.1
22,231 + GFF23 0.26 +0.0
22,232 - GFF23 0.26 +0.6
22,232 - GFF23 0.26 -1.0
22,232 - GFF23 0.26 -0.6
22,232 - GFF23 0.26 +1.4
22,232 - GFF23 0.26 -1.0
22,232 - GFF23 0.26 +0.7
22,232 - GFF23 0.26 +0.8
22,399 + GFF23 0.40 -0.4
22,483 + GFF23 0.48 -0.1
22,483 + GFF23 0.48 +0.0
22,484 - GFF23 0.48 -0.1
22,484 - GFF23 0.48 -0.7
22,591 + GFF23 0.57 -0.9
22,591 + GFF23 0.57 -1.2
22,592 - GFF23 0.57 -0.2
23,098 + -0.1
23,098 + +1.6
23,098 + +0.5
23,098 + +0.2
23,098 + +0.2
23,099 - +0.1
23,100 + +0.8
23,100 + -0.5
23,100 + -0.0
23,100 + -0.1
23,100 + -0.4
23,100 + +0.1
23,100 + -0.5
23,100 + -0.6
23,100 + +0.0
23,101 - +0.5
23,101 - +0.2
23,101 - +1.2
23,101 - +0.3
23,101 - +1.0
23,125 + -1.0
23,126 - -0.5
23,151 - +0.6
23,177 + +0.7
23,240 + +0.1
23,241 - +0.0
23,241 - +0.4
23,266 + -0.6
23,267 - -1.0
23,381 + -0.6
23,381 + +0.0
23,382 - -0.1
23,696 + GFF24 0.40 +0.3
23,696 + GFF24 0.40 +0.0
23,696 + GFF24 0.40 -0.9
23,697 - GFF24 0.40 +0.4
23,749 - GFF24 0.46 +0.4
23,783 + GFF24 0.50 -0.0
23,812 + GFF24 0.54 +0.4
23,812 + GFF24 0.54 -2.2

Or see this region's nucleotide sequence