Strain Fitness in Pseudomonas sp. DMC3 around GFF1737

Experiment: D,L-Lactate and casaminos (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1736 and GFF1737 overlap by 4 nucleotidesGFF1737 and GFF1738 overlap by 1 nucleotides GFF1736 - Na(+)/H(+) antiporter subunit D, at 524,222 to 525,901 GFF1736 GFF1737 - Na(+)/H(+) antiporter subunit C1, at 525,898 to 526,242 GFF1737 GFF1738 - NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic, at 526,242 to 529,160 GFF1738 Position (kb) 525 526 527Strain fitness (log2 ratio) -2 -1 0 1at 524.999 kb on - strand, within GFF1736at 525.039 kb on + strand, within GFF1736at 525.120 kb on + strand, within GFF1736at 525.120 kb on + strand, within GFF1736at 525.120 kb on + strand, within GFF1736at 525.120 kb on + strand, within GFF1736at 525.120 kb on + strand, within GFF1736at 525.120 kb on + strand, within GFF1736at 525.121 kb on - strand, within GFF1736at 525.121 kb on - strand, within GFF1736at 525.121 kb on - strand, within GFF1736at 525.180 kb on + strand, within GFF1736at 525.180 kb on + strand, within GFF1736at 525.181 kb on - strand, within GFF1736at 525.181 kb on - strand, within GFF1736at 525.242 kb on + strand, within GFF1736at 525.242 kb on + strand, within GFF1736at 525.243 kb on - strand, within GFF1736at 525.342 kb on + strand, within GFF1736at 525.342 kb on + strand, within GFF1736at 525.342 kb on + strand, within GFF1736at 525.343 kb on - strand, within GFF1736at 525.343 kb on - strand, within GFF1736at 525.399 kb on + strand, within GFF1736at 525.399 kb on + strand, within GFF1736at 525.399 kb on + strand, within GFF1736at 525.446 kb on + strand, within GFF1736at 525.446 kb on + strand, within GFF1736at 525.446 kb on + strand, within GFF1736at 525.447 kb on - strand, within GFF1736at 525.453 kb on + strand, within GFF1736at 525.453 kb on + strand, within GFF1736at 525.454 kb on - strand, within GFF1736at 525.522 kb on + strand, within GFF1736at 525.522 kb on + strand, within GFF1736at 525.523 kb on - strand, within GFF1736at 525.702 kb on + strand, within GFF1736at 525.703 kb on - strand, within GFF1736at 525.961 kb on + strand, within GFF1737at 525.962 kb on - strand, within GFF1737at 526.040 kb on + strand, within GFF1737at 526.041 kb on - strand, within GFF1737at 526.041 kb on - strand, within GFF1737at 526.041 kb on - strand, within GFF1737at 526.041 kb on - strand, within GFF1737at 526.041 kb on - strand, within GFF1737at 526.133 kb on + strand, within GFF1737at 526.133 kb on + strand, within GFF1737at 526.134 kb on - strand, within GFF1737at 526.357 kb on + strandat 526.357 kb on + strandat 526.357 kb on + strandat 526.357 kb on + strandat 526.392 kb on - strandat 526.392 kb on - strandat 526.567 kb on + strand, within GFF1738at 526.567 kb on + strand, within GFF1738at 526.567 kb on + strand, within GFF1738at 526.567 kb on + strand, within GFF1738at 526.567 kb on + strand, within GFF1738at 526.567 kb on + strand, within GFF1738at 526.567 kb on + strand, within GFF1738at 526.567 kb on + strand, within GFF1738at 526.568 kb on - strand, within GFF1738at 526.568 kb on - strand, within GFF1738at 526.568 kb on - strand, within GFF1738at 526.568 kb on - strand, within GFF1738at 526.568 kb on - strand, within GFF1738at 526.568 kb on - strand, within GFF1738at 526.568 kb on - strand, within GFF1738at 526.568 kb on - strand, within GFF1738at 526.568 kb on - strand, within GFF1738at 526.578 kb on - strand, within GFF1738at 526.842 kb on + strand, within GFF1738at 526.963 kb on + strand, within GFF1738at 526.963 kb on + strand, within GFF1738at 526.963 kb on + strand, within GFF1738at 526.964 kb on - strand, within GFF1738at 526.964 kb on - strand, within GFF1738at 526.964 kb on - strand, within GFF1738at 527.073 kb on - strand, within GFF1738at 527.118 kb on - strand, within GFF1738

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C)
remove
524,999 - GFF1736 0.46 -0.7
525,039 + GFF1736 0.49 -0.3
525,120 + GFF1736 0.53 -0.5
525,120 + GFF1736 0.53 +0.1
525,120 + GFF1736 0.53 +0.1
525,120 + GFF1736 0.53 -0.5
525,120 + GFF1736 0.53 -1.5
525,120 + GFF1736 0.53 +0.5
525,121 - GFF1736 0.54 -0.3
525,121 - GFF1736 0.54 +0.4
525,121 - GFF1736 0.54 +0.5
525,180 + GFF1736 0.57 -1.5
525,180 + GFF1736 0.57 +0.2
525,181 - GFF1736 0.57 -0.7
525,181 - GFF1736 0.57 +0.3
525,242 + GFF1736 0.61 +1.3
525,242 + GFF1736 0.61 +0.0
525,243 - GFF1736 0.61 +0.7
525,342 + GFF1736 0.67 -0.1
525,342 + GFF1736 0.67 -0.9
525,342 + GFF1736 0.67 -0.9
525,343 - GFF1736 0.67 -2.0
525,343 - GFF1736 0.67 -0.0
525,399 + GFF1736 0.70 -0.1
525,399 + GFF1736 0.70 -1.6
525,399 + GFF1736 0.70 -0.3
525,446 + GFF1736 0.73 +0.5
525,446 + GFF1736 0.73 -0.5
525,446 + GFF1736 0.73 +0.4
525,447 - GFF1736 0.73 -0.3
525,453 + GFF1736 0.73 -0.5
525,453 + GFF1736 0.73 +0.6
525,454 - GFF1736 0.73 -0.8
525,522 + GFF1736 0.77 -0.5
525,522 + GFF1736 0.77 +0.3
525,523 - GFF1736 0.77 -0.4
525,702 + GFF1736 0.88 -1.6
525,703 - GFF1736 0.88 +0.3
525,961 + GFF1737 0.18 +0.2
525,962 - GFF1737 0.19 -0.3
526,040 + GFF1737 0.41 -1.4
526,041 - GFF1737 0.41 +0.6
526,041 - GFF1737 0.41 -1.7
526,041 - GFF1737 0.41 -0.7
526,041 - GFF1737 0.41 +0.4
526,041 - GFF1737 0.41 -1.2
526,133 + GFF1737 0.68 +1.0
526,133 + GFF1737 0.68 -0.5
526,134 - GFF1737 0.68 +0.4
526,357 + +0.2
526,357 + +0.2
526,357 + -0.7
526,357 + +0.5
526,392 - +1.3
526,392 - +0.5
526,567 + GFF1738 0.11 -0.9
526,567 + GFF1738 0.11 +0.4
526,567 + GFF1738 0.11 -0.4
526,567 + GFF1738 0.11 -0.9
526,567 + GFF1738 0.11 +0.0
526,567 + GFF1738 0.11 -1.0
526,567 + GFF1738 0.11 -0.9
526,567 + GFF1738 0.11 -0.3
526,568 - GFF1738 0.11 +0.4
526,568 - GFF1738 0.11 +1.7
526,568 - GFF1738 0.11 -0.3
526,568 - GFF1738 0.11 +0.6
526,568 - GFF1738 0.11 -0.1
526,568 - GFF1738 0.11 -0.9
526,568 - GFF1738 0.11 -0.1
526,568 - GFF1738 0.11 +0.2
526,568 - GFF1738 0.11 -0.5
526,578 - GFF1738 0.12 -0.5
526,842 + GFF1738 0.21 -0.2
526,963 + GFF1738 0.25 +0.1
526,963 + GFF1738 0.25 +0.1
526,963 + GFF1738 0.25 +0.7
526,964 - GFF1738 0.25 -0.4
526,964 - GFF1738 0.25 +0.5
526,964 - GFF1738 0.25 -0.3
527,073 - GFF1738 0.28 +0.3
527,118 - GFF1738 0.30 -0.0

Or see this region's nucleotide sequence