Experiment: D,L-Lactate and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1305 and GFF1306 are separated by 289 nucleotides GFF1306 and GFF1307 are separated by 39 nucleotides
GFF1305 - hypothetical protein, at 61,306 to 62,262
GFF1305
GFF1306 - putative low molecular weight protein-tyrosine-phosphatase AmsI, at 62,552 to 62,992
GFF1306
GFF1307 - Tyrosine-protein kinase wzc, at 63,032 to 65,254
GFF1307
Position (kb) 62
63 Strain fitness (log2 ratio) -2
-1
0
1 at 61.625 kb on + strand, within GFF1305 at 61.625 kb on + strand, within GFF1305 at 61.626 kb on - strand, within GFF1305 at 61.666 kb on - strand, within GFF1305 at 61.666 kb on - strand, within GFF1305 at 61.821 kb on - strand, within GFF1305 at 61.821 kb on - strand, within GFF1305 at 61.911 kb on + strand, within GFF1305 at 62.036 kb on + strand, within GFF1305 at 62.036 kb on + strand, within GFF1305 at 62.036 kb on + strand, within GFF1305 at 62.036 kb on + strand, within GFF1305 at 62.036 kb on + strand, within GFF1305 at 62.037 kb on - strand, within GFF1305 at 62.037 kb on - strand, within GFF1305 at 62.241 kb on + strand at 62.290 kb on + strand at 62.291 kb on - strand at 62.297 kb on - strand at 62.297 kb on - strand at 62.297 kb on - strand at 62.337 kb on + strand at 62.442 kb on - strand at 62.455 kb on + strand at 62.535 kb on - strand at 62.587 kb on + strand at 62.587 kb on + strand at 62.587 kb on + strand at 62.588 kb on - strand at 62.588 kb on - strand at 62.589 kb on + strand at 62.589 kb on + strand at 62.589 kb on + strand at 62.589 kb on + strand at 62.590 kb on - strand at 62.590 kb on - strand at 62.648 kb on - strand, within GFF1306 at 62.895 kb on + strand, within GFF1306 at 63.012 kb on + strand at 63.031 kb on + strand at 63.032 kb on - strand at 63.040 kb on - strand at 63.079 kb on + strand at 63.079 kb on + strand at 63.079 kb on + strand at 63.194 kb on + strand at 63.195 kb on - strand at 63.195 kb on - strand at 63.467 kb on + strand, within GFF1307 at 63.468 kb on - strand, within GFF1307 at 63.639 kb on + strand, within GFF1307 at 63.639 kb on + strand, within GFF1307 at 63.640 kb on - strand, within GFF1307 at 63.640 kb on - strand, within GFF1307 at 63.640 kb on - strand, within GFF1307 at 63.691 kb on - strand, within GFF1307 at 63.716 kb on - strand, within GFF1307 at 63.716 kb on - strand, within GFF1307 at 63.842 kb on + strand, within GFF1307 at 63.843 kb on - strand, within GFF1307
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate and casaminos (C) remove 61,625 + GFF1305 0.33 -0.2 61,625 + GFF1305 0.33 -0.2 61,626 - GFF1305 0.33 -0.3 61,666 - GFF1305 0.38 +1.4 61,666 - GFF1305 0.38 -0.2 61,821 - GFF1305 0.54 -0.4 61,821 - GFF1305 0.54 -0.4 61,911 + GFF1305 0.63 -0.3 62,036 + GFF1305 0.76 -1.2 62,036 + GFF1305 0.76 -0.3 62,036 + GFF1305 0.76 -0.2 62,036 + GFF1305 0.76 -1.3 62,036 + GFF1305 0.76 +0.6 62,037 - GFF1305 0.76 -0.5 62,037 - GFF1305 0.76 +0.6 62,241 + +0.6 62,290 + -0.4 62,291 - -0.2 62,297 - -0.7 62,297 - -0.9 62,297 - -0.1 62,337 + +0.1 62,442 - +1.3 62,455 + +0.5 62,535 - +0.5 62,587 + +0.2 62,587 + +0.5 62,587 + +0.6 62,588 - -0.2 62,588 - -0.1 62,589 + -0.5 62,589 + +0.6 62,589 + -1.1 62,589 + +0.2 62,590 - -0.5 62,590 - -0.5 62,648 - GFF1306 0.22 +0.8 62,895 + GFF1306 0.78 -1.5 63,012 + -0.5 63,031 + +0.6 63,032 - +0.1 63,040 - +0.6 63,079 + -0.3 63,079 + -0.4 63,079 + -0.8 63,194 + +0.7 63,195 - +0.1 63,195 - +0.8 63,467 + GFF1307 0.20 -0.5 63,468 - GFF1307 0.20 -0.4 63,639 + GFF1307 0.27 -1.5 63,639 + GFF1307 0.27 -0.0 63,640 - GFF1307 0.27 -0.4 63,640 - GFF1307 0.27 -0.9 63,640 - GFF1307 0.27 -1.3 63,691 - GFF1307 0.30 -0.1 63,716 - GFF1307 0.31 -1.0 63,716 - GFF1307 0.31 -1.9 63,842 + GFF1307 0.36 -0.9 63,843 - GFF1307 0.36 -0.2
Or see this region's nucleotide sequence